Wall clock time and date at job start Tue Mar 31 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00068 * 2 1 4 4 H 1.48494 * 109.46900 * 270.00485 * 3 2 1 5 5 H 1.48504 * 109.46831 * 29.99912 * 3 2 1 6 6 H 1.48497 * 109.47241 * 149.99892 * 3 2 1 7 7 C 1.37877 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99570 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47116 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00104 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99717 * 180.02562 * 11 10 9 14 14 C 1.45199 * 116.99614 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46928 * 179.97438 * 14 13 11 16 16 C 1.32739 * 124.70220 * 89.99868 * 15 14 13 17 17 C 1.44466 * 113.09044 * 179.97438 * 16 15 14 18 18 C 1.47023 * 123.47519 * 179.97438 * 17 16 15 19 19 O 1.21565 * 120.00416 * 0.02562 * 18 17 16 20 20 O 1.34800 * 120.00205 * 180.02562 * 18 17 16 21 21 C 1.36109 * 113.04931 * 0.02562 * 17 16 15 22 22 S 1.70448 * 110.80534 * 359.76024 * 21 17 16 23 23 H 0.96999 * 120.00252 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47089 * 59.99899 * 9 7 2 25 25 H 1.09003 * 109.47404 * 299.99828 * 9 7 2 26 26 H 1.09000 * 109.47151 * 59.99992 * 10 9 7 27 27 H 1.09003 * 109.47028 * 299.99448 * 10 9 7 28 28 H 1.09002 * 109.47177 * 299.99820 * 14 13 11 29 29 H 1.09001 * 109.47399 * 59.99991 * 14 13 11 30 30 H 1.08003 * 123.45189 * 359.97438 * 16 15 14 31 31 H 0.96702 * 117.00441 * 179.97438 * 20 18 17 32 32 H 1.07994 * 124.59397 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0025 12 8 0.2835 -4.9672 -0.0015 13 8 2.1629 -6.1297 -0.0031 14 6 1.3721 -7.3474 -0.0031 15 6 2.2901 -8.5425 -0.0045 16 6 2.7513 -9.1424 1.0861 17 6 3.6126 -10.2648 0.7940 18 6 4.2481 -11.0908 1.8311 19 8 4.0589 -10.8431 3.0061 20 8 5.0406 -12.1229 1.4791 21 6 3.7761 -10.4781 -0.5403 22 16 2.8925 -9.3379 -1.4483 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8726 -3.6047 0.8877 27 1 2.8712 -3.6040 -0.8923 28 1 0.7436 -7.3725 0.8872 29 1 0.7428 -7.3720 -0.8928 30 1 2.5077 -8.8239 2.0889 31 1 5.4366 -12.6368 2.1961 32 1 4.3800 -11.2658 -0.9659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:26 Heat of formation + Delta-G solvation = -157.984697 kcal Electronic energy + Delta-G solvation = -18516.729803 eV Core-core repulsion = 15147.861220 eV Total energy + Delta-G solvation = -3368.868582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51778 -40.03789 -37.76316 -36.36464 -36.12316 -33.60935 -31.90361 -31.03803 -27.11521 -25.90469 -25.55878 -22.42019 -21.68757 -19.89975 -19.85962 -18.39743 -17.77585 -17.41773 -16.87473 -16.28860 -16.18475 -15.95592 -15.31869 -14.48572 -14.42678 -14.00820 -13.42217 -13.33736 -13.14998 -12.88608 -12.26913 -12.23239 -12.19514 -11.88882 -11.55522 -11.22607 -10.97233 -10.83774 -10.65618 -10.49461 -10.07033 -10.03728 -9.67618 -9.31480 -9.17995 -8.90861 -8.39138 -6.02947 -4.07910 0.21220 1.02923 1.33299 1.47498 2.64883 2.72256 2.75211 3.20859 3.31020 3.37544 3.40715 4.28253 4.43660 4.65079 4.81221 4.87141 5.10438 5.18771 5.32616 5.42441 5.57238 5.67204 5.87381 6.09171 6.09496 6.16511 6.56929 6.86307 7.54204 7.64526 7.70965 7.96157 8.20250 8.36317 8.99127 9.56321 11.08064 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.031994 B = 0.002701 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.942772 B =10363.584563 C =10645.668455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.458 3.542 12 O -0.503 6.503 13 O -0.361 6.361 14 C 0.135 3.865 15 C -0.209 4.209 16 C -0.059 4.059 17 C -0.157 4.157 18 C 0.548 3.452 19 O -0.511 6.511 20 O -0.515 6.515 21 C -0.181 4.181 22 S 0.236 5.764 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.415 0.585 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.592 -24.728 -1.980 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.140 4.140 11 C 0.302 3.698 12 O -0.390 6.390 13 O -0.280 6.280 14 C 0.060 3.940 15 C -0.325 4.325 16 C -0.087 4.087 17 C -0.173 4.173 18 C 0.390 3.610 19 O -0.400 6.400 20 O -0.327 6.327 21 C -0.319 4.319 22 S 0.504 5.496 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.177 0.823 31 H 0.274 0.726 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.609 -24.086 -3.538 25.506 hybrid contribution 0.866 0.104 2.040 2.219 sum 8.475 -23.982 -1.498 25.479 Atomic orbital electron populations 1.69989 1.06100 1.26795 1.49903 1.25021 0.94860 0.99352 0.95096 0.86537 0.79780 0.83207 0.78133 1.20597 1.21176 1.19774 1.21149 0.93084 0.90615 1.51847 0.92289 1.19029 0.93222 0.89253 0.98934 1.21797 1.00712 0.87378 1.04133 1.24851 0.88001 0.85436 0.71549 1.90647 1.15814 1.87544 1.44954 1.86651 1.41914 1.14428 1.85000 1.21068 0.90159 0.78781 1.04041 1.24021 1.08567 1.03347 0.96613 1.21051 0.94702 0.92751 1.00240 1.19225 1.06210 1.00521 0.91362 1.20079 0.75626 0.78004 0.87310 1.90936 1.59919 1.69313 1.19839 1.84551 1.60482 1.42716 1.44938 1.26012 1.03713 1.04646 0.97553 1.83282 1.39119 1.19835 1.07345 0.92824 0.95562 0.95532 0.88820 0.88854 0.89079 0.89943 0.82269 0.72590 0.80101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.85 4.26 -27.88 -0.12 0.74 16 10 C -0.10 -2.06 5.75 -27.88 -0.16 -2.22 16 11 C 0.46 8.75 7.96 36.01 0.29 9.04 16 12 O -0.50 -11.08 15.73 -18.75 -0.29 -11.37 16 13 O -0.36 -5.76 10.20 -39.26 -0.40 -6.16 16 14 C 0.14 1.73 5.92 36.01 0.21 1.95 16 15 C -0.21 -2.27 6.08 -36.19 -0.22 -2.49 16 16 C -0.06 -0.65 9.95 -39.01 -0.39 -1.04 16 17 C -0.16 -1.57 5.98 -104.65 -0.63 -2.20 16 18 C 0.55 5.58 8.30 34.29 0.28 5.87 16 19 O -0.51 -6.79 17.58 -19.32 -0.34 -7.13 16 20 O -0.51 -3.46 13.08 -40.76 -0.53 -3.99 16 21 C -0.18 -1.42 10.56 29.97 0.32 -1.10 16 22 S 0.24 1.95 23.00 -107.50 -2.47 -0.52 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 27 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 28 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16 29 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 30 H 0.16 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.42 0.96 9.11 45.56 0.42 1.38 16 32 H 0.18 0.97 8.02 -52.49 -0.42 0.55 16 LS Contribution 313.05 15.07 4.72 4.72 Total: -1.00 -34.66 313.05 -6.93 -41.59 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -2.50 Total: -2.45 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.82 Total: -4.87 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.57 Total: -28.66 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.47 Total: -0.52 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.66 -6.93 -41.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.397 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds