Wall clock time and date at job start Tue Mar 31 2020 05:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99879 * 2 1 4 4 H 1.48501 * 109.47163 * 240.00759 * 3 2 1 5 5 H 1.48503 * 109.47141 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47460 * 120.00227 * 3 2 1 7 7 C 1.37873 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00189 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46789 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46998 * 179.97438 * 10 9 7 12 12 O 1.45194 * 109.47046 * 180.02562 * 11 10 9 13 13 C 1.34813 * 116.99775 * 180.02562 * 12 11 10 14 14 O 1.21569 * 120.00152 * 359.97438 * 13 12 11 15 15 C 1.46967 * 120.00029 * 179.97438 * 13 12 11 16 16 C 1.34658 * 123.89205 * 6.05954 * 15 13 12 17 17 S 1.70287 * 111.18356 * 180.26983 * 16 15 13 18 18 C 1.70287 * 93.20428 * 359.73482 * 17 16 15 19 19 C 1.34654 * 111.18310 * 359.97438 * 18 17 16 20 20 C 1.46973 * 123.89316 * 179.97438 * 19 18 17 21 21 O 1.21566 * 119.99989 * 173.96153 * 20 19 18 22 22 O 1.34810 * 119.99506 * 353.96704 * 20 19 18 23 23 H 0.96993 * 120.00307 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47584 * 59.99628 * 9 7 2 25 25 H 1.08999 * 109.46825 * 299.99606 * 9 7 2 26 26 H 1.08993 * 109.47176 * 59.99924 * 10 9 7 27 27 H 1.08999 * 109.47162 * 299.99456 * 10 9 7 28 28 H 1.08999 * 109.46936 * 59.99346 * 11 10 9 29 29 H 1.08999 * 109.46864 * 299.99815 * 11 10 9 30 30 H 1.07999 * 124.41088 * 359.97438 * 16 15 13 31 31 H 1.07992 * 124.40393 * 180.02562 * 18 17 16 32 32 H 0.96700 * 116.99716 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4805 -4.9871 -0.0033 12 8 2.4240 -6.0906 -0.0037 13 6 1.9088 -7.3364 -0.0047 14 8 0.7036 -7.4958 -0.0048 15 6 2.8041 -8.5019 -0.0057 16 6 4.1430 -8.4204 0.1123 17 16 4.8601 -9.9642 0.0640 18 6 3.3640 -10.7587 -0.1094 19 6 2.3451 -9.8786 -0.1298 20 6 0.9332 -10.2624 -0.2689 21 8 0.0618 -9.4206 -0.1689 22 8 0.6046 -11.5479 -0.5072 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6242 -2.5574 0.8880 26 1 2.8721 -3.6050 0.8872 27 1 2.8720 -3.6035 -0.8927 28 1 0.8534 -5.0443 -0.8930 29 1 0.8542 -5.0454 0.8869 30 1 4.6911 -7.4960 0.2186 31 1 3.2475 -11.8292 -0.1913 32 1 -0.3370 -11.7521 -0.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:57 Heat of formation + Delta-G solvation = -145.797589 kcal Electronic energy + Delta-G solvation = -19080.371190 eV Core-core repulsion = 15712.031080 eV Total energy + Delta-G solvation = -3368.340110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.62783 -39.67441 -37.52416 -36.21665 -35.83265 -33.93892 -31.75231 -30.79460 -27.22124 -26.16148 -24.22236 -23.07004 -21.60582 -20.32423 -19.13206 -18.37059 -18.03210 -17.39053 -16.67951 -16.25693 -16.16407 -15.62728 -15.34391 -14.46283 -14.08022 -13.64271 -13.43518 -13.39516 -13.27196 -12.87570 -12.15968 -12.09833 -11.98370 -11.74058 -11.56822 -10.92685 -10.85405 -10.60479 -10.58736 -10.27882 -9.72268 -9.67156 -9.56286 -9.42791 -9.15118 -9.01865 -8.36484 -6.01238 -4.04504 0.25696 0.91769 0.95102 1.35879 2.61596 2.82359 2.91331 3.22745 3.33569 3.37874 3.40328 4.33414 4.45124 4.88056 4.91110 5.06072 5.18122 5.34427 5.45772 5.64986 5.68600 5.72039 6.07919 6.33166 6.57489 6.58057 6.91604 7.02266 7.62954 7.74650 7.80916 7.97025 8.13573 8.38249 9.01604 9.59528 11.10208 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.003044 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.119405 B = 9196.095144 C =10097.219451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.071 3.929 12 O -0.359 6.359 13 C 0.497 3.503 14 O -0.451 6.451 15 C -0.093 4.093 16 C -0.209 4.209 17 S 0.293 5.707 18 C -0.214 4.214 19 C -0.099 4.099 20 C 0.516 3.484 21 O -0.444 6.444 22 O -0.522 6.522 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.191 0.809 31 H 0.186 0.814 32 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.916 -25.972 -0.265 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.145 4.145 11 C -0.001 4.001 12 O -0.276 6.276 13 C 0.336 3.664 14 O -0.336 6.336 15 C -0.107 4.107 16 C -0.346 4.346 17 S 0.561 5.439 18 C -0.352 4.352 19 C -0.113 4.113 20 C 0.355 3.645 21 O -0.328 6.328 22 O -0.336 6.336 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.208 0.792 31 H 0.203 0.797 32 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 11.020 -26.002 -0.112 28.241 hybrid contribution -1.916 1.358 -0.152 2.353 sum 9.104 -24.644 -0.264 26.273 Atomic orbital electron populations 1.69956 1.06087 1.26868 1.50437 1.25032 0.94876 0.99343 0.95218 0.86604 0.79526 0.82914 0.78638 1.20192 1.21268 1.20186 1.21137 0.93065 0.90712 1.51129 0.92493 1.19051 0.93856 0.90691 0.97736 1.21759 0.99926 0.91002 1.01851 1.23488 0.91168 0.83236 1.02256 1.86519 1.42467 1.14614 1.84027 1.20269 0.87254 0.83296 0.75587 1.91110 1.14712 1.85821 1.41973 1.18945 0.92424 0.90831 1.08458 1.25679 0.97995 1.05747 1.05166 1.82035 1.05120 0.93027 1.63710 1.25587 0.97989 1.05697 1.05878 1.18740 0.91581 0.91229 1.09726 1.20049 0.89122 0.80205 0.75158 1.91242 1.49873 1.49276 1.42390 1.84511 1.34864 1.29423 1.84768 0.92830 0.96210 0.96193 0.92196 0.92192 0.91495 0.91482 0.79215 0.79688 0.72708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 11 C 0.07 1.40 5.48 37.16 0.20 1.60 16 12 O -0.36 -6.37 9.90 -40.80 -0.40 -6.77 16 13 C 0.50 8.68 7.91 34.27 0.27 8.95 16 14 O -0.45 -9.33 12.40 -27.83 -0.34 -9.68 16 15 C -0.09 -1.24 5.99 -104.68 -0.63 -1.87 16 16 C -0.21 -1.97 10.48 29.47 0.31 -1.66 16 17 S 0.29 1.70 22.77 -107.50 -2.45 -0.75 16 18 C -0.21 -1.63 10.48 29.46 0.31 -1.32 16 19 C -0.10 -1.16 5.99 -104.68 -0.63 -1.79 16 20 C 0.52 6.75 8.28 34.27 0.28 7.04 16 21 O -0.44 -7.82 13.39 -27.82 -0.37 -8.20 16 22 O -0.52 -4.58 13.11 -40.79 -0.53 -5.12 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.19 1.57 8.02 -52.49 -0.42 1.15 16 31 H 0.19 0.94 8.02 -52.49 -0.42 0.52 16 32 H 0.41 1.94 9.11 45.56 0.42 2.36 16 LS Contribution 305.44 15.07 4.60 4.60 Total: -1.00 -36.23 305.44 -6.86 -43.10 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -2.50 Total: -2.79 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -0.57 Total: -4.66 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.66 Total: -29.76 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.45 Total: -0.75 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.23 -6.86 -43.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.699 kcal (2) G-P(sol) polarization free energy of solvation -36.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds