Wall clock time and date at job start Tue Mar 31 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48502 * 109.46808 * 239.99796 * 3 2 1 5 5 H 1.48503 * 109.46779 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46975 * 120.00005 * 3 2 1 7 7 C 1.37878 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00193 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99636 * 0.02562 * 7 2 1 10 10 O 1.42895 * 110.63235 * 298.34260 * 9 7 2 11 11 C 1.55142 * 110.70234 * 175.05043 * 9 7 2 12 12 C 1.54915 * 101.65389 * 205.96620 * 11 9 7 13 13 N 1.47844 * 104.79356 * 37.07076 * 12 11 9 14 14 C 1.37804 * 110.99748 * 213.64059 * 13 12 11 15 15 N 1.30261 * 124.74327 * 120.80329 * 14 13 12 16 16 C 1.30819 * 117.27851 * 180.02562 * 15 14 13 17 17 C 1.36836 * 114.01085 * 359.97438 * 16 15 14 18 18 C 1.41745 * 126.11235 * 180.02562 * 17 16 15 19 19 O 1.21683 * 119.99589 * 179.97438 * 18 17 16 20 20 O 1.34943 * 120.00018 * 359.97438 * 18 17 16 21 21 S 1.70918 * 124.73845 * 300.84143 * 14 13 12 22 22 C 1.47445 * 108.57005 * 335.90178 * 13 12 11 23 23 H 0.97000 * 119.99974 * 0.02562 * 1 2 3 24 24 H 0.96706 * 113.99574 * 61.65773 * 10 9 7 25 25 H 1.09008 * 110.99142 * 324.05420 * 11 9 7 26 26 H 1.08997 * 110.99454 * 87.83478 * 11 9 7 27 27 H 1.08994 * 110.36867 * 278.24026 * 12 11 9 28 28 H 1.08997 * 110.37120 * 155.89739 * 12 11 9 29 29 H 1.08002 * 122.99843 * 179.97438 * 16 15 14 30 30 H 0.96706 * 114.00029 * 179.97438 * 20 18 17 31 31 H 1.09000 * 109.88592 * 120.39487 * 22 13 12 32 32 H 1.08992 * 109.89047 * 241.42627 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4489 -2.6174 1.1772 11 6 2.2288 -3.6971 -0.1240 12 6 1.3226 -4.7750 -0.7696 13 7 0.4641 -4.0296 -1.7147 14 6 -0.7892 -4.5968 -1.7960 15 7 -1.9023 -3.9810 -1.5158 16 6 -3.0124 -4.6613 -1.6433 17 6 -2.8301 -5.9507 -2.0633 18 6 -3.8506 -6.9090 -2.2858 19 8 -3.5613 -8.0297 -2.6615 20 8 -5.1428 -6.5786 -2.0809 21 16 -1.1002 -6.2070 -2.2776 22 6 0.3812 -2.6270 -1.2678 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2289 -1.9328 1.2617 25 1 3.0673 -3.4507 -0.7756 26 1 2.5803 -4.0179 0.8566 27 1 0.7142 -5.2642 -0.0091 28 1 1.9267 -5.5086 -1.3033 29 1 -3.9860 -4.2425 -1.4355 30 1 -5.7654 -7.2967 -2.2591 31 1 0.7622 -1.9666 -2.0468 32 1 -0.6532 -2.3714 -1.0383 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182246.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:14 Heat of formation + Delta-G solvation = -78.337384 kcal Electronic energy + Delta-G solvation = -20191.570346 eV Core-core repulsion = 16858.448281 eV Total energy + Delta-G solvation = -3333.122065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44146 -39.84019 -38.06801 -36.04594 -34.88807 -32.25776 -31.32951 -29.41501 -28.04584 -25.67738 -24.49950 -22.75518 -21.50602 -20.28569 -19.37544 -18.23200 -17.73124 -17.20182 -16.64551 -15.83312 -15.61760 -15.08279 -14.92881 -14.34892 -14.08927 -13.74739 -13.54716 -13.05153 -12.74075 -12.29779 -11.69023 -11.67152 -11.56543 -11.38301 -11.09251 -10.94333 -10.87493 -10.77902 -10.54516 -10.25939 -9.81688 -9.35580 -9.30241 -9.18460 -8.70753 -8.42312 -7.78574 -6.30021 -4.39454 0.25825 1.09372 1.73819 2.37099 3.15333 3.20027 3.25840 3.27913 3.42566 3.98847 4.23817 4.70658 4.96156 5.12394 5.24607 5.48709 5.54183 5.69831 5.85899 5.99492 6.01985 6.31116 6.42424 6.59317 6.73059 6.89321 7.09243 7.27152 7.48075 7.70139 7.78393 7.90496 7.99533 8.63102 9.26038 9.35092 10.76951 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.032604 B = 0.004583 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.591664 B = 6108.361631 C = 6618.278119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.242 3.758 10 O -0.587 6.587 11 C -0.112 4.112 12 C 0.046 3.954 13 N -0.448 5.448 14 C 0.267 3.733 15 N -0.524 5.524 16 C 0.185 3.815 17 C -0.373 4.373 18 C 0.571 3.429 19 O -0.532 6.532 20 O -0.502 6.502 21 S 0.220 5.780 22 C 0.030 3.970 23 H 0.270 0.730 24 H 0.383 0.617 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.188 0.812 30 H 0.409 0.591 31 H 0.086 0.914 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 -9.660 -3.415 11.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.201 3.799 10 O -0.396 6.396 11 C -0.150 4.150 12 C -0.080 4.080 13 N -0.167 5.167 14 C -0.098 4.098 15 N -0.243 5.243 16 C 0.020 3.980 17 C -0.497 4.497 18 C 0.417 3.583 19 O -0.424 6.424 20 O -0.313 6.313 21 S 0.477 5.523 22 C -0.097 4.097 23 H 0.080 0.920 24 H 0.234 0.766 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.204 0.796 30 H 0.266 0.734 31 H 0.104 0.896 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.279 -10.326 -3.987 11.545 hybrid contribution -1.572 1.527 0.378 2.223 sum -4.851 -8.800 -3.610 10.677 Atomic orbital electron populations 1.69700 1.05903 1.27952 1.49454 1.25052 0.95035 0.99637 0.93432 0.86487 0.79563 0.82188 0.78818 1.20032 1.21100 1.20038 1.21446 0.93614 0.90137 1.52517 0.91678 1.19654 0.86549 0.92146 0.81533 1.86097 1.51800 1.56689 1.45008 1.22721 0.97647 0.94455 1.00222 1.23329 0.95067 0.97028 0.92586 1.60410 1.03696 1.07856 1.44710 1.25910 0.94685 0.94704 0.94484 1.66742 0.97365 1.37362 1.22877 1.22575 0.97804 0.87965 0.89696 1.23432 0.97045 1.00471 1.28703 1.17766 0.81684 0.85353 0.73494 1.90950 1.83681 1.22460 1.45320 1.85027 1.17356 1.46518 1.82360 1.83813 0.97038 1.09751 1.61741 1.24084 1.05009 0.80850 0.99778 0.91980 0.76615 0.89853 0.90483 0.92128 0.89934 0.79550 0.73376 0.89593 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.02 10.96 55.43 0.61 -22.41 16 2 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 3 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -13.67 8.12 -34.44 -0.28 -13.95 16 8 H 0.07 1.63 7.78 -52.49 -0.41 1.22 16 9 C 0.24 5.64 0.85 -89.94 -0.08 5.57 16 10 O -0.59 -14.56 13.08 -35.23 -0.46 -15.02 16 11 C -0.11 -2.17 6.22 -24.59 -0.15 -2.32 16 12 C 0.05 0.79 6.35 -2.29 -0.01 0.77 16 13 N -0.45 -8.58 5.23 -172.29 -0.90 -9.48 16 14 C 0.27 4.85 6.45 -87.99 -0.57 4.29 16 15 N -0.52 -9.81 8.59 -14.75 -0.13 -9.94 16 16 C 0.18 2.87 11.11 -18.49 -0.21 2.66 16 17 C -0.37 -5.65 6.32 -38.75 -0.24 -5.89 16 18 C 0.57 7.98 8.08 32.07 0.26 8.24 16 19 O -0.53 -8.63 17.60 -19.41 -0.34 -8.97 16 20 O -0.50 -5.18 13.25 -41.16 -0.55 -5.72 16 21 S 0.22 3.36 22.59 -107.50 -2.43 0.93 16 22 C 0.03 0.67 5.17 -2.83 -0.01 0.65 16 23 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 24 H 0.38 9.82 7.44 45.56 0.34 10.16 16 25 H 0.08 1.52 8.04 -51.92 -0.42 1.10 16 26 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.06 1.05 7.79 -51.93 -0.40 0.65 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.19 2.36 8.04 -52.49 -0.42 1.94 16 30 H 0.41 2.25 8.98 45.56 0.41 2.66 16 31 H 0.09 2.08 7.81 -51.93 -0.41 1.67 16 32 H 0.11 2.56 5.99 -51.93 -0.31 2.25 16 LS Contribution 292.56 15.07 4.41 4.41 Total: -1.00 -29.17 292.56 -7.80 -36.97 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -1.60 Total: 12.59 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.39 Total: 1.74 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.42 Total: -41.83 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -1.35 Total: -29.71 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.43 Total: 0.93 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.17 -7.80 -36.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182246.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.364 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds