Wall clock time and date at job start Tue Mar 31 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99962 * 2 1 4 4 H 1.48496 * 109.46944 * 270.00260 * 3 2 1 5 5 H 1.48501 * 109.46884 * 29.99999 * 3 2 1 6 6 H 1.48496 * 109.46963 * 150.00181 * 3 2 1 7 7 C 1.37879 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99842 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00328 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.27387 * 60.63298 * 9 7 2 11 11 C 1.54593 * 110.39572 * 182.77873 * 9 7 2 12 12 C 1.54943 * 102.91873 * 140.91547 * 11 9 7 13 13 N 1.48529 * 103.23110 * 322.58517 * 12 11 9 14 14 C 1.37792 * 111.00023 * 159.72011 * 13 12 11 15 15 N 1.30265 * 124.74391 * 242.30343 * 14 13 12 16 16 C 1.30816 * 117.28074 * 179.83324 * 15 14 13 17 17 C 1.36838 * 114.01170 * 0.45293 * 16 15 14 18 18 C 1.41736 * 126.11611 * 179.76836 * 17 16 15 19 19 O 1.21677 * 120.00089 * 179.97438 * 18 17 16 20 20 O 1.34952 * 120.00035 * 359.97438 * 18 17 16 21 21 S 1.70922 * 124.74125 * 62.60766 * 14 13 12 22 22 C 1.47906 * 105.81645 * 39.20833 * 13 12 11 23 23 H 0.97002 * 120.00143 * 0.02562 * 1 2 3 24 24 H 0.96697 * 113.99726 * 299.36966 * 10 9 7 25 25 H 1.08999 * 110.72465 * 259.27602 * 11 9 7 26 26 H 1.09004 * 110.72424 * 22.38286 * 11 9 7 27 27 H 1.08995 * 110.66363 * 81.02624 * 12 11 9 28 28 H 1.09004 * 110.66081 * 203.98526 * 12 11 9 29 29 H 1.08000 * 122.99647 * 180.21020 * 16 15 14 30 30 H 0.96694 * 114.00081 * 180.02562 * 20 18 17 31 31 H 1.08998 * 109.91583 * 215.31824 * 22 13 12 32 32 H 1.09004 * 109.91554 * 94.02407 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4346 -2.5985 -1.1703 11 6 2.2351 -3.6894 0.0681 12 6 1.5126 -4.6812 1.0141 13 7 0.8788 -3.7910 2.0202 14 6 -0.1551 -4.4332 2.6662 15 7 -1.4019 -4.0580 2.6272 16 6 -2.2661 -4.7789 3.2940 17 6 -1.7123 -5.8405 3.9564 18 6 -2.4081 -6.7811 4.7566 19 8 -1.8014 -7.6868 5.2971 20 8 -3.7433 -6.6720 4.9190 21 16 0.0203 -5.8293 3.6366 22 6 0.3856 -2.6178 1.2665 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2318 -1.9018 -1.2449 25 1 2.3770 -4.1309 -0.9183 26 1 3.1902 -3.3761 0.4899 27 1 0.7564 -5.2485 0.4717 28 1 2.2291 -5.3524 1.4877 29 1 -3.3220 -4.5539 3.3226 30 1 -4.1285 -7.3581 5.4811 31 1 0.4889 -1.7174 1.8720 32 1 -0.6586 -2.7656 0.9911 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:16 Heat of formation + Delta-G solvation = -78.828619 kcal Electronic energy + Delta-G solvation = -20060.395768 eV Core-core repulsion = 16727.252402 eV Total energy + Delta-G solvation = -3333.143366 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.48333 -39.85489 -38.11212 -36.09540 -35.00440 -32.25131 -31.37152 -29.44298 -27.95127 -25.69848 -24.48861 -22.82084 -21.67656 -20.29234 -19.35039 -18.24137 -17.77642 -17.20179 -16.72714 -15.88053 -15.64627 -15.16673 -14.81424 -14.36258 -14.09727 -13.85210 -13.59005 -13.18521 -12.56161 -12.33506 -11.78010 -11.67176 -11.56387 -11.48148 -11.08529 -10.96948 -10.90671 -10.72164 -10.51740 -10.30403 -9.78810 -9.43498 -9.35104 -9.25601 -8.69577 -8.37722 -7.92905 -6.30138 -4.38566 0.18786 1.03882 1.68659 2.30634 3.08700 3.19484 3.27208 3.29987 3.37190 3.94740 4.24918 4.66319 4.96206 5.06271 5.23501 5.43907 5.48380 5.66740 5.87038 5.94428 6.00454 6.26508 6.42413 6.60111 6.62592 6.79568 7.13965 7.28290 7.42606 7.68973 7.73283 7.84051 8.00492 8.64113 9.26587 9.36355 10.77182 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.031557 B = 0.004402 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.075775 B = 6359.187671 C = 6711.485612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.244 3.756 10 O -0.588 6.588 11 C -0.107 4.107 12 C 0.041 3.959 13 N -0.436 5.436 14 C 0.259 3.741 15 N -0.527 5.527 16 C 0.182 3.818 17 C -0.371 4.371 18 C 0.571 3.429 19 O -0.530 6.530 20 O -0.502 6.502 21 S 0.229 5.771 22 C 0.042 3.958 23 H 0.270 0.730 24 H 0.383 0.617 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.188 0.812 30 H 0.410 0.590 31 H 0.096 0.904 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 -10.126 6.147 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.134 4.134 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.204 3.796 10 O -0.397 6.397 11 C -0.145 4.145 12 C -0.085 4.085 13 N -0.155 5.155 14 C -0.106 4.106 15 N -0.247 5.247 16 C 0.017 3.983 17 C -0.494 4.494 18 C 0.417 3.583 19 O -0.422 6.422 20 O -0.313 6.313 21 S 0.485 5.515 22 C -0.086 4.086 23 H 0.080 0.920 24 H 0.234 0.766 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.205 0.795 30 H 0.267 0.733 31 H 0.115 0.885 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.803 -10.424 6.267 12.295 hybrid contribution -1.725 1.214 0.235 2.123 sum -3.529 -9.209 6.501 11.812 Atomic orbital electron populations 1.69665 1.05928 1.27854 1.49991 1.25046 0.95037 0.99670 0.93606 0.86425 0.79845 0.82505 0.78280 1.20432 1.21054 1.19704 1.21606 0.93669 0.90189 1.51788 0.91639 1.19393 0.86402 0.92414 0.81425 1.86138 1.52230 1.55890 1.45469 1.22547 0.98966 0.95081 0.97928 1.23535 0.98055 0.95210 0.91705 1.61560 1.19461 1.07884 1.26628 1.26019 0.91476 0.94553 0.98547 1.66787 0.99814 1.33033 1.25053 1.22572 1.00634 0.87215 0.87915 1.23486 0.98149 1.08535 1.19256 1.17760 0.80467 0.82319 0.77797 1.90955 1.68595 1.34458 1.48212 1.85023 1.22316 1.55933 1.67997 1.83855 1.01611 1.23920 1.42088 1.23999 0.99530 0.88722 0.96313 0.92029 0.76574 0.90534 0.89869 0.92287 0.89787 0.79517 0.73317 0.88525 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.15 10.77 55.43 0.60 -22.55 16 2 C 0.07 1.76 5.00 -17.82 -0.09 1.67 16 3 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.53 -13.62 8.09 -34.44 -0.28 -13.90 16 8 H 0.07 1.65 7.57 -52.48 -0.40 1.25 16 9 C 0.24 5.71 0.99 -90.42 -0.09 5.62 16 10 O -0.59 -14.52 12.92 -35.23 -0.46 -14.98 16 11 C -0.11 -2.07 6.34 -24.87 -0.16 -2.23 16 12 C 0.04 0.70 6.27 -1.90 -0.01 0.68 16 13 N -0.44 -8.39 5.34 -171.53 -0.92 -9.31 16 14 C 0.26 4.62 6.51 -88.00 -0.57 4.04 16 15 N -0.53 -9.59 8.81 -14.75 -0.13 -9.72 16 16 C 0.18 2.71 11.11 -18.49 -0.21 2.51 16 17 C -0.37 -5.44 6.32 -38.75 -0.24 -5.68 16 18 C 0.57 7.72 8.08 32.07 0.26 7.98 16 19 O -0.53 -8.39 17.60 -19.40 -0.34 -8.73 16 20 O -0.50 -4.95 13.25 -41.18 -0.55 -5.50 16 21 S 0.23 3.40 22.70 -107.50 -2.44 0.96 16 22 C 0.04 0.95 5.04 -2.75 -0.01 0.93 16 23 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 24 H 0.38 9.71 7.31 45.56 0.33 10.04 16 25 H 0.08 1.41 8.08 -51.93 -0.42 0.99 16 26 H 0.08 1.55 7.70 -51.93 -0.40 1.15 16 27 H 0.06 1.00 7.99 -51.93 -0.42 0.58 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.19 2.24 8.04 -52.49 -0.42 1.82 16 30 H 0.41 2.09 8.98 45.56 0.41 2.50 16 31 H 0.10 2.46 7.12 -51.93 -0.37 2.09 16 32 H 0.07 1.77 6.57 -51.93 -0.34 1.43 16 LS Contribution 291.82 15.07 4.40 4.40 Total: -1.00 -29.29 291.82 -7.84 -37.13 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -1.58 Total: 11.62 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.40 Total: 1.63 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.45 Total: -41.58 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -1.34 Total: -29.21 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -2.44 Total: 0.96 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.29 -7.84 -37.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.696 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds