Wall clock time and date at job start Tue Mar 31 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 119.99958 * 2 1 4 4 C 1.50696 * 109.47481 * 270.00250 * 3 2 1 5 5 H 1.08005 * 119.99988 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00146 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99934 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00042 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46836 * 90.00484 * 8 6 4 10 10 H 1.48502 * 109.47106 * 210.00341 * 8 6 4 11 11 H 1.48498 * 109.46831 * 330.00364 * 8 6 4 12 12 C 1.34777 * 120.00079 * 180.02562 * 2 1 3 13 13 O 1.21590 * 120.00001 * 179.97438 * 12 2 1 14 14 N 1.34772 * 119.99918 * 359.97438 * 12 2 1 15 15 C 1.39507 * 119.99812 * 185.32362 * 14 12 2 16 16 C 1.38123 * 123.51451 * 353.46295 * 15 14 12 17 17 C 1.33571 * 115.09535 * 180.25460 * 16 15 14 18 18 S 1.70563 * 111.21129 * 359.75868 * 17 16 15 19 19 C 1.37542 * 123.50834 * 173.26893 * 15 14 12 20 20 C 1.41437 * 125.48823 * 0.03815 * 19 15 14 21 21 O 1.21713 * 119.99506 * 359.72280 * 20 19 15 22 22 O 1.34979 * 120.00079 * 179.71257 * 20 19 15 23 23 H 1.09002 * 109.46575 * 269.99372 * 1 2 3 24 24 H 1.09001 * 109.47326 * 29.99271 * 1 2 3 25 25 H 1.09002 * 109.47072 * 149.99686 * 1 2 3 26 26 H 1.09000 * 109.47064 * 30.00417 * 3 2 1 27 27 H 1.09002 * 109.47267 * 150.00028 * 3 2 1 28 28 H 0.97006 * 119.99920 * 179.97438 * 7 6 4 29 29 H 0.97005 * 120.00089 * 5.32833 * 14 12 2 30 30 H 1.07999 * 122.44952 * 359.97438 * 16 15 14 31 31 H 1.08006 * 124.39658 * 179.78246 * 17 16 15 32 32 H 0.96697 * 113.99652 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0973 1.0963 -2.2417 6 6 3.1259 2.8781 -1.6726 7 7 3.5533 3.6182 -0.6730 8 14 3.4366 3.4178 -3.4338 9 1 2.3063 4.2606 -3.8999 10 1 4.6967 4.2011 -3.4965 11 1 3.5539 2.2209 -4.3049 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0005 15 6 2.1581 -3.5399 0.1110 16 6 3.5362 -3.6317 0.0943 17 6 4.0229 -4.8704 0.2078 18 16 2.7674 -6.0160 0.3515 19 6 1.5404 -4.7606 0.2530 20 6 0.1430 -4.9725 0.3053 21 8 -0.6192 -4.0268 0.2270 22 8 -0.3453 -6.2235 0.4418 23 1 -0.3632 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6084 2.0284 0.5139 27 1 3.1499 1.1384 0.5138 28 1 4.0301 4.4441 -0.8502 29 1 0.4981 -2.3362 -0.0782 30 1 4.1734 -2.7658 -0.0079 31 1 5.0749 -5.1149 0.2089 32 1 -1.3109 -6.2681 0.4681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610114371.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:31 Heat of formation + Delta-G solvation = -69.135696 kcal Electronic energy + Delta-G solvation = -19978.349183 eV Core-core repulsion = 16645.626134 eV Total energy + Delta-G solvation = -3332.723049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.83643 -39.81859 -37.65121 -36.06285 -34.97235 -33.82870 -32.47183 -30.10152 -27.84916 -26.18526 -24.89757 -22.96624 -22.58069 -20.31454 -19.27328 -18.61473 -17.72503 -17.47444 -16.59610 -15.88587 -15.70719 -15.34103 -15.09505 -14.89648 -14.41066 -13.58836 -13.44410 -13.38415 -13.17769 -12.57303 -12.43679 -12.21199 -11.94079 -11.69312 -11.24928 -11.08989 -10.91646 -10.73114 -10.62235 -10.49197 -10.16824 -9.69977 -9.25905 -8.87569 -8.47444 -8.01563 -7.60515 -6.08417 -4.13499 0.33428 1.48802 1.87892 2.28115 2.90617 3.09032 3.21031 3.28521 3.35203 3.40326 3.77935 4.30349 4.44915 4.88958 5.10274 5.25966 5.46717 5.52529 5.66582 5.84532 6.01393 6.14368 6.20903 6.34851 6.70770 6.81787 7.26962 7.40913 7.55798 7.74341 7.88275 8.16596 8.39882 8.85010 9.03612 9.51765 10.99512 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.004358 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.469750 B = 6424.108343 C = 6990.325402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.603 5.603 3 C 0.258 3.742 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.695 3.305 13 O -0.560 6.560 14 N -0.658 5.658 15 C 0.294 3.706 16 C -0.179 4.179 17 C -0.193 4.193 18 S 0.215 5.785 19 C -0.368 4.368 20 C 0.567 3.433 21 O -0.534 6.534 22 O -0.507 6.507 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.421 0.579 30 H 0.196 0.804 31 H 0.175 0.825 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.584 -18.746 3.118 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.337 5.337 3 C 0.139 3.861 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.397 3.603 13 O -0.437 6.437 14 N -0.307 5.307 15 C 0.175 3.825 16 C -0.212 4.212 17 C -0.331 4.331 18 S 0.479 5.521 19 C -0.490 4.490 20 C 0.415 3.585 21 O -0.428 6.428 22 O -0.317 6.317 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.264 0.736 30 H 0.213 0.787 31 H 0.192 0.808 32 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -4.478 -19.681 3.299 20.452 hybrid contribution -0.892 1.928 -1.189 2.435 sum -5.371 -17.753 2.110 18.667 Atomic orbital electron populations 1.21692 0.81059 1.02785 1.00974 1.47577 1.06139 1.06119 1.73846 1.19346 0.92465 0.76578 0.97751 1.21434 1.36780 1.06414 0.92221 0.92396 1.24918 0.95237 0.96287 0.97516 1.69928 1.38262 1.14322 1.30760 0.86476 0.77703 0.78595 0.84529 1.20612 1.21033 1.19904 1.15982 0.85475 0.80115 0.78759 1.90688 1.11277 1.84979 1.56804 1.43248 1.12269 1.03023 1.72174 1.17143 0.91486 0.83992 0.89885 1.21026 0.93862 1.00557 1.05723 1.25457 1.05390 0.97640 1.04635 1.82911 0.92142 1.06866 1.70138 1.21591 0.95437 0.97484 1.34514 1.17825 0.87538 0.80738 0.72382 1.90819 1.59459 1.42709 1.49764 1.85040 1.29952 1.30651 1.86054 0.93168 0.89864 0.92770 0.94404 0.93416 0.92629 0.73574 0.78740 0.80790 0.73383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.25 59.85 0.61 1.94 16 2 N -0.60 -13.05 2.86 -188.74 -0.54 -13.59 16 3 C 0.26 6.65 5.16 -5.19 -0.03 6.63 16 4 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 12 C 0.70 15.04 8.23 -86.92 -0.72 14.33 16 13 O -0.56 -13.61 12.69 5.29 0.07 -13.55 16 14 N -0.66 -11.94 5.21 -14.83 -0.08 -12.01 16 15 C 0.29 4.88 6.63 -84.66 -0.56 4.32 16 16 C -0.18 -2.83 9.09 -41.26 -0.38 -3.21 16 17 C -0.19 -2.29 10.89 29.10 0.32 -1.97 16 18 S 0.22 2.34 22.82 -107.50 -2.45 -0.11 16 19 C -0.37 -5.24 6.28 -38.62 -0.24 -5.48 16 20 C 0.57 7.59 8.07 31.95 0.26 7.85 16 21 O -0.53 -8.15 15.21 -19.43 -0.30 -8.45 16 22 O -0.51 -4.93 13.30 -41.26 -0.55 -5.47 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 25 H 0.05 0.81 6.29 -51.93 -0.33 0.48 16 26 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 27 H 0.05 1.37 7.42 -51.93 -0.39 0.98 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.42 7.12 3.95 -40.82 -0.16 6.96 16 30 H 0.20 3.61 5.21 -52.55 -0.27 3.34 16 31 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.41 2.08 8.98 45.56 0.41 2.49 16 LS Contribution 296.02 15.07 4.46 4.46 Total: -1.00 -33.22 296.02 -6.79 -40.01 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -1.97 Total: 6.58 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -1.15 Total: 10.90 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.12 Total: -51.03 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.78 Total: -27.47 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.45 Total: -0.11 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.22 -6.79 -40.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610114371.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.122 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds