Wall clock time and date at job start Tue Mar 31 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48500 * 109.46755 * 269.99620 * 3 2 1 5 5 H 1.48496 * 109.47178 * 29.99570 * 3 2 1 6 6 H 1.48498 * 109.47247 * 149.99566 * 3 2 1 7 7 C 1.38815 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00097 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99838 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46748 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21583 * 120.00270 * 359.72083 * 14 13 12 16 16 C 1.47577 * 119.99657 * 179.72390 * 14 13 12 17 17 C 1.39735 * 120.14132 * 359.72117 * 16 14 13 18 18 C 1.37731 * 119.90119 * 179.74286 * 17 16 14 19 19 C 1.38762 * 120.19506 * 0.53604 * 18 17 16 20 20 F 1.35097 * 119.85950 * 179.76408 * 19 18 17 21 21 C 1.38494 * 120.28296 * 359.73707 * 19 18 17 22 22 C 1.38199 * 120.09370 * 359.97438 * 21 19 18 23 23 F 1.35103 * 120.09784 * 179.97438 * 22 21 19 24 24 H 0.97003 * 120.00466 * 0.02562 * 1 2 3 25 25 H 0.96992 * 120.00189 * 0.02562 * 9 7 2 26 26 H 1.08995 * 109.46761 * 60.00109 * 10 9 7 27 27 H 1.09007 * 109.46829 * 300.00128 * 10 9 7 28 28 H 1.08995 * 109.47672 * 60.00334 * 11 10 9 29 29 H 1.09006 * 109.46819 * 299.99764 * 11 10 9 30 30 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 31 31 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 32 32 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 33 33 H 1.08003 * 120.04759 * 0.02562 * 17 16 14 34 34 H 1.07998 * 119.90258 * 180.27136 * 18 17 16 35 35 H 1.07994 * 119.95509 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8768 -7.2583 0.0005 14 6 1.3262 -8.5289 0.0067 15 8 2.5215 -8.7511 0.0072 16 6 0.3671 -9.6506 0.0129 17 6 -1.0073 -9.3986 0.0182 18 6 -1.8979 -10.4492 0.0186 19 6 -1.4344 -11.7571 0.0249 20 9 -2.3141 -12.7824 0.0301 21 6 -0.0739 -12.0159 0.0254 22 6 0.8303 -10.9707 0.0191 23 9 2.1575 -11.2231 0.0201 24 1 -0.4851 0.8400 -0.0004 25 1 0.3556 -2.3881 -0.0002 26 1 2.6847 -3.7145 0.8905 27 1 2.6848 -3.7145 -0.8895 28 1 0.4375 -4.7619 -0.8903 29 1 0.4368 -4.7621 0.8897 30 1 2.4549 -6.2024 0.8910 31 1 2.4561 -6.2025 -0.8890 32 1 -0.0768 -7.0810 0.0005 33 1 -1.3706 -8.3816 0.0174 34 1 -2.9602 -10.2545 0.0182 35 1 0.2810 -13.0358 0.0308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175064514.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:15 Heat of formation + Delta-G solvation = -116.161549 kcal Electronic energy + Delta-G solvation = -20711.362353 eV Core-core repulsion = 16958.592818 eV Total energy + Delta-G solvation = -3752.769536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.14864 -50.10065 -41.17766 -39.25591 -37.51475 -35.98337 -33.89671 -32.49260 -31.77030 -30.87861 -27.12771 -25.24392 -24.45936 -23.73624 -22.59491 -21.71223 -19.58968 -19.18195 -18.66744 -18.30787 -17.24982 -17.10558 -16.77590 -16.71997 -16.52991 -16.40814 -15.92903 -15.55245 -15.54248 -15.27972 -15.07999 -14.54838 -14.16637 -13.92292 -13.54367 -13.30747 -13.03995 -12.81434 -12.66091 -12.53332 -12.40952 -12.07222 -12.04216 -11.79642 -11.17311 -10.93906 -10.35323 -10.20390 -9.87057 -9.00980 -7.96304 -5.25035 -0.62518 -0.11491 1.48661 1.49904 1.55159 1.58481 1.95697 2.42261 2.56611 2.67106 3.18564 3.37806 3.42006 3.50839 3.76155 3.77066 3.98748 4.09774 4.28898 4.42444 4.57431 4.59528 4.72266 4.73472 4.78218 4.87490 4.89501 4.91275 5.24683 5.32949 5.35653 5.49793 5.55306 6.26874 6.40969 7.07411 7.33571 8.08322 8.32285 9.27177 Molecular weight = 284.11amu Principal moments of inertia in cm(-1) A = 0.037102 B = 0.002440 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.498694 B =11473.964822 C =12202.693801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.746 5.746 10 C 0.151 3.849 11 C -0.118 4.118 12 C 0.133 3.867 13 N -0.705 5.705 14 C 0.553 3.447 15 O -0.574 6.574 16 C -0.197 4.197 17 C -0.015 4.015 18 C -0.156 4.156 19 C 0.156 3.844 20 F -0.126 7.126 21 C -0.200 4.200 22 C 0.165 3.835 23 F -0.128 7.128 24 H 0.253 0.747 25 H 0.377 0.623 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.417 0.583 33 H 0.180 0.820 34 H 0.183 0.817 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 -25.767 0.075 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.381 4.381 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.156 4.156 12 C 0.008 3.992 13 N -0.358 5.358 14 C 0.341 3.659 15 O -0.455 6.455 16 C -0.201 4.201 17 C -0.033 4.033 18 C -0.174 4.174 19 C 0.136 3.864 20 F -0.105 7.105 21 C -0.220 4.220 22 C 0.144 3.856 23 F -0.106 7.106 24 H 0.061 0.939 25 H 0.209 0.791 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.256 0.744 33 H 0.197 0.803 34 H 0.201 0.799 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.006 -25.842 0.083 26.531 hybrid contribution 0.054 0.785 -0.014 0.787 sum -5.953 -25.057 0.069 25.755 Atomic orbital electron populations 1.69791 1.06492 1.26199 1.59349 1.25560 0.96471 1.01070 1.03555 0.85147 0.77709 0.79463 0.77487 1.21333 1.21980 1.19600 1.19636 0.91538 0.85456 1.41465 0.90819 1.42530 1.05774 1.01110 1.89545 1.20684 0.94152 0.84802 0.97976 1.21707 0.98489 0.91782 1.03646 1.21154 0.91649 0.84156 1.02211 1.45736 1.11521 1.04462 1.74065 1.18280 0.87720 0.83541 0.76367 1.90840 1.17947 1.85292 1.51389 1.20106 0.95724 0.91599 1.12680 1.21411 0.88724 1.01840 0.91349 1.21513 1.03470 0.89280 1.03186 1.17650 0.85803 0.85206 0.97742 1.91573 1.67733 1.58047 1.93101 1.21122 0.91661 1.00868 1.08343 1.17578 0.77798 0.92529 0.97709 1.91583 1.31465 1.94753 1.92837 0.93868 0.79118 0.96060 0.96066 0.90321 0.90327 0.91773 0.91753 0.74437 0.80278 0.79937 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.16 13.06 21.65 0.28 -57.88 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 3 Si 0.97 45.72 29.55 68.60 2.03 47.74 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.75 -37.09 5.60 -343.44 -1.92 -39.02 16 10 C 0.15 5.75 6.26 86.38 0.54 6.29 16 11 C -0.12 -3.22 5.44 30.59 0.17 -3.06 16 12 C 0.13 3.29 5.67 86.38 0.49 3.78 16 13 N -0.71 -14.15 5.51 -466.22 -2.57 -16.72 16 14 C 0.55 13.74 7.76 86.71 0.67 14.41 16 15 O -0.57 -19.78 15.34 -3.98 -0.06 -19.84 16 16 C -0.20 -3.62 5.88 -20.05 -0.12 -3.74 16 17 C -0.01 -0.14 9.53 22.51 0.21 0.07 16 18 C -0.16 -1.22 10.01 22.28 0.22 -0.99 16 19 C 0.16 1.79 7.30 22.46 0.16 1.95 16 20 F -0.13 -1.55 17.26 44.97 0.78 -0.77 16 21 C -0.20 -2.83 9.99 22.32 0.22 -2.61 16 22 C 0.16 3.30 7.28 22.66 0.17 3.46 16 23 F -0.13 -3.40 15.55 44.97 0.70 -2.70 16 24 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 25 H 0.38 19.44 7.67 -92.71 -0.71 18.73 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.42 5.26 6.50 -92.71 -0.60 4.66 16 33 H 0.18 0.58 6.40 -2.91 -0.02 0.56 16 34 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 35 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -73.57 315.49 3.11 -70.45 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -0.17 Total: 15.94 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 4.05 Total: 2.80 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -4.21 Total: -113.62 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.06 Total: -19.84 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 1.48 Total: -3.47 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -73.57 3.11 -70.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175064514.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.710 kcal (2) G-P(sol) polarization free energy of solvation -73.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds