Wall clock time and date at job start Tue Mar 31 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46863 * 2 1 4 4 H 1.09000 * 109.47361 * 303.40783 * 3 2 1 5 5 C 1.50699 * 109.46977 * 183.40922 * 3 2 1 6 6 H 1.07999 * 120.00740 * 239.99861 * 5 3 2 7 7 C 1.37885 * 119.99835 * 59.99964 * 5 3 2 8 8 N 1.31514 * 119.99893 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47004 * 60.00054 * 9 7 5 11 11 H 1.48496 * 109.47176 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46999 * 300.00265 * 9 7 5 13 13 N 1.46495 * 109.47135 * 63.41071 * 3 2 1 14 14 S 1.65605 * 120.00055 * 216.02812 * 13 3 2 15 15 O 1.42094 * 106.40463 * 178.96637 * 14 13 3 16 16 O 1.42103 * 106.40261 * 311.88853 * 14 13 3 17 17 C 1.76200 * 107.21629 * 65.42333 * 14 13 3 18 18 C 1.38231 * 119.61382 * 93.13439 * 17 14 13 19 19 C 1.38638 * 119.15662 * 179.97438 * 18 17 14 20 20 C 1.50694 * 120.78406 * 179.97438 * 19 18 17 21 21 C 1.38667 * 118.41946 * 0.02562 * 19 18 17 22 22 C 1.38177 * 119.16954 * 359.97438 * 21 19 18 23 23 N 1.31857 * 119.62218 * 272.86094 * 17 14 13 24 24 H 1.09009 * 109.47251 * 174.83385 * 1 2 3 25 25 H 1.09003 * 109.47593 * 54.83174 * 1 2 3 26 26 H 1.08999 * 109.47071 * 294.82998 * 1 2 3 27 27 H 1.08999 * 109.47048 * 120.00160 * 2 1 3 28 28 H 1.08996 * 109.46792 * 240.00124 * 2 1 3 29 29 H 0.96998 * 119.99738 * 180.02562 * 8 7 5 30 30 H 0.96997 * 120.00427 * 36.03540 * 13 3 2 31 31 H 1.07993 * 120.42183 * 0.02562 * 18 17 14 32 32 H 1.09004 * 109.46909 * 90.00623 * 20 19 18 33 33 H 1.09008 * 109.47041 * 209.99576 * 20 19 18 34 34 H 1.08996 * 109.47802 * 329.99849 * 20 19 18 35 35 H 1.08002 * 120.41326 * 179.97438 * 21 19 18 36 36 H 1.07995 * 119.62155 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6276 1.9737 -0.8578 5 6 3.5445 1.4434 -0.0845 6 1 4.1295 1.8952 0.7030 7 6 4.1745 0.8673 -1.1673 8 7 3.4623 0.3176 -2.1265 9 14 6.0396 0.8690 -1.2724 10 1 6.6019 0.1457 -0.1036 11 1 6.4655 0.1928 -2.5240 12 1 6.5341 2.2692 -1.2727 13 7 1.6198 2.1089 1.2351 14 16 1.1988 3.7104 1.2099 15 8 0.8222 4.0472 2.5380 16 8 2.2280 4.3848 0.4991 17 6 -0.2579 3.8512 0.2287 18 6 -1.4983 3.8087 0.8374 19 6 -2.6382 3.9209 0.0563 20 6 -4.0087 3.8787 0.6814 21 6 -2.4871 4.0719 -1.3138 22 6 -1.2147 4.1058 -1.8514 23 7 -0.1522 4.0015 -1.0770 24 1 -0.3634 -1.0236 -0.0925 25 1 -0.3634 0.5919 -0.8401 26 1 -0.3633 0.4315 0.9327 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.9056 -0.0880 -2.8881 30 1 1.5884 1.6123 2.0677 31 1 -1.5783 3.6903 1.9078 32 1 -4.3179 4.8895 0.9477 33 1 -4.7194 3.4568 -0.0294 34 1 -3.9804 3.2593 1.5778 35 1 -3.3532 4.1619 -1.9528 36 1 -1.0886 4.2236 -2.9175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198025136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:05 Heat of formation + Delta-G solvation = -48.417125 kcal Electronic energy + Delta-G solvation = -21038.387558 eV Core-core repulsion = 17842.396028 eV Total energy + Delta-G solvation = -3195.991530 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.11448 -36.65185 -35.89710 -35.15796 -34.02280 -32.11047 -31.43754 -30.62407 -27.99390 -26.57525 -23.90489 -23.00953 -22.57852 -20.16938 -18.91397 -17.40047 -16.98189 -16.63636 -16.29972 -15.87720 -15.20519 -14.61297 -14.47826 -14.31580 -13.67366 -13.17920 -12.99969 -12.97821 -12.90076 -12.76276 -12.13111 -11.85693 -11.65531 -11.48708 -11.28984 -11.16130 -10.89344 -10.83940 -10.71322 -10.20077 -9.84337 -9.79309 -9.73322 -9.57275 -9.39901 -9.35640 -8.34814 -8.20344 -5.98973 -4.04451 0.65467 1.05245 1.20049 3.38890 3.41945 3.45409 3.49035 3.85262 4.26263 4.34292 4.50501 4.58206 4.84231 4.90541 4.99601 5.29748 5.30731 5.35984 5.42949 5.58644 5.67498 5.86977 6.08352 6.09063 6.12142 6.31747 6.50716 6.55610 6.77993 6.96171 7.13372 7.61455 7.69116 7.82503 7.95888 8.14406 8.31122 8.97143 9.60640 11.06023 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.006100 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.891708 B = 4589.385760 C = 4894.026853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.277 3.723 4 H 0.054 0.946 5 C -0.518 4.518 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.274 1.274 13 N -1.094 6.094 14 S 2.693 3.307 15 O -0.981 6.981 16 O -0.925 6.925 17 C -0.429 4.429 18 C -0.092 4.092 19 C -0.065 4.065 20 C -0.115 4.115 21 C -0.131 4.131 22 C 0.084 3.916 23 N -0.381 5.381 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.106 0.894 29 H 0.263 0.737 30 H 0.406 0.594 31 H 0.149 0.851 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.138 0.862 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.563 3.671 3.144 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.173 3.827 4 H 0.072 0.928 5 C -0.557 4.557 6 H 0.082 0.918 7 C -0.138 4.138 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.856 5.856 14 S 2.776 3.224 15 O -0.971 6.971 16 O -0.914 6.914 17 C -0.646 4.646 18 C -0.113 4.113 19 C -0.073 4.073 20 C -0.172 4.172 21 C -0.151 4.151 22 C -0.077 4.077 23 N -0.091 5.091 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.124 0.876 29 H 0.072 0.928 30 H 0.239 0.761 31 H 0.167 0.833 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.156 0.844 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.297 4.411 2.804 14.288 hybrid contribution -0.616 -0.567 0.006 0.837 sum -13.913 3.844 2.810 14.705 Atomic orbital electron populations 1.21828 0.99311 0.99487 0.99754 1.21896 0.91636 0.99670 1.03428 1.18676 0.94682 0.89811 0.79486 0.92850 1.21453 0.91013 1.36810 1.06439 0.91845 1.24878 0.98531 0.95051 0.95323 1.69831 1.35215 1.38384 1.09832 0.86569 0.85356 0.78467 0.77127 1.20312 1.21351 1.19951 1.55536 1.81255 1.29976 1.18813 1.02262 0.73539 0.73983 0.72614 1.93535 1.84634 1.83574 1.35328 1.93619 1.51778 1.72259 1.73759 1.34157 1.18439 1.08835 1.03187 1.21879 0.91978 0.95839 1.01577 1.20394 0.96157 0.96832 0.93951 1.20830 0.92058 1.03003 1.01275 1.22278 0.99369 0.98207 0.95212 1.23127 0.88046 0.95828 1.00679 1.67922 1.33244 1.04829 1.03126 0.94469 0.94085 0.94579 0.93944 0.87566 0.92764 0.76082 0.83283 0.90434 0.90888 0.90708 0.84398 0.81828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.72 37.16 0.36 -2.35 16 2 C -0.13 -2.80 5.37 -26.73 -0.14 -2.94 16 3 C 0.28 6.67 2.17 -69.09 -0.15 6.52 16 4 H 0.05 1.40 7.69 -51.93 -0.40 1.00 16 5 C -0.52 -14.15 8.84 -34.44 -0.30 -14.46 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -24.88 11.30 55.43 0.63 -24.25 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 N -1.09 -22.25 4.93 -5.89 -0.03 -22.28 16 14 S 2.69 54.63 5.72 -107.50 -0.61 54.01 16 15 O -0.98 -19.46 17.18 -57.17 -0.98 -20.45 16 16 O -0.92 -22.68 17.63 -57.17 -1.01 -23.69 16 17 C -0.43 -7.80 6.73 -17.54 -0.12 -7.92 16 18 C -0.09 -1.35 9.27 -39.44 -0.37 -1.72 16 19 C -0.06 -0.78 5.92 -104.32 -0.62 -1.40 16 20 C -0.12 -0.93 10.06 36.00 0.36 -0.57 16 21 C -0.13 -1.53 9.82 -39.45 -0.39 -1.92 16 22 C 0.08 1.22 11.18 -17.55 -0.20 1.03 16 23 N -0.38 -7.23 9.96 -12.45 -0.12 -7.35 16 24 H 0.04 0.62 8.14 -51.92 -0.42 0.19 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.59 7.86 -51.93 -0.41 0.18 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.11 2.65 5.99 -51.93 -0.31 2.34 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.41 7.09 8.85 -34.47 -0.30 6.79 16 31 H 0.15 1.92 7.54 -52.49 -0.40 1.53 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.48 8.10 -51.92 -0.42 0.06 16 34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.16 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 320.88 15.07 4.84 4.84 Total: -1.00 -33.44 320.88 -8.71 -42.16 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.74 Total: 4.46 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -1.65 Total: -24.06 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.47 Total: -53.89 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -1.99 Total: -44.14 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 54.63 SS G_CDS: -0.61 Total: 54.01 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.44 -8.71 -42.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198025136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.260 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds