Wall clock time and date at job start Tue Mar 31 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46863 * 2 1 4 4 H 1.09000 * 109.47361 * 303.40783 * 3 2 1 5 5 C 1.50699 * 109.46977 * 183.40922 * 3 2 1 6 6 H 1.07999 * 120.00740 * 239.99861 * 5 3 2 7 7 C 1.37885 * 119.99835 * 59.99964 * 5 3 2 8 8 N 1.31514 * 119.99893 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47004 * 60.00054 * 9 7 5 11 11 H 1.48496 * 109.47176 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46999 * 300.00265 * 9 7 5 13 13 N 1.46495 * 109.47135 * 63.41071 * 3 2 1 14 14 S 1.65605 * 120.00055 * 216.02812 * 13 3 2 15 15 O 1.42094 * 106.40463 * 178.96637 * 14 13 3 16 16 O 1.42103 * 106.40261 * 311.88853 * 14 13 3 17 17 C 1.76200 * 107.21629 * 65.42333 * 14 13 3 18 18 C 1.38231 * 119.61382 * 93.13439 * 17 14 13 19 19 C 1.38638 * 119.15662 * 179.97438 * 18 17 14 20 20 C 1.50694 * 120.78406 * 179.97438 * 19 18 17 21 21 C 1.38667 * 118.41946 * 0.02562 * 19 18 17 22 22 C 1.38177 * 119.16954 * 359.97438 * 21 19 18 23 23 N 1.31857 * 119.62218 * 272.86094 * 17 14 13 24 24 H 1.09009 * 109.47251 * 174.83385 * 1 2 3 25 25 H 1.09003 * 109.47593 * 54.83174 * 1 2 3 26 26 H 1.08999 * 109.47071 * 294.82998 * 1 2 3 27 27 H 1.08999 * 109.47048 * 120.00160 * 2 1 3 28 28 H 1.08996 * 109.46792 * 240.00124 * 2 1 3 29 29 H 0.96998 * 119.99738 * 180.02562 * 8 7 5 30 30 H 0.96997 * 120.00427 * 36.03540 * 13 3 2 31 31 H 1.07993 * 120.42183 * 0.02562 * 18 17 14 32 32 H 1.09004 * 109.46909 * 90.00623 * 20 19 18 33 33 H 1.09008 * 109.47041 * 209.99576 * 20 19 18 34 34 H 1.08996 * 109.47802 * 329.99849 * 20 19 18 35 35 H 1.08002 * 120.41326 * 179.97438 * 21 19 18 36 36 H 1.07995 * 119.62155 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6276 1.9737 -0.8578 5 6 3.5445 1.4434 -0.0845 6 1 4.1295 1.8952 0.7030 7 6 4.1745 0.8673 -1.1673 8 7 3.4623 0.3176 -2.1265 9 14 6.0396 0.8690 -1.2724 10 1 6.6019 0.1457 -0.1036 11 1 6.4655 0.1928 -2.5240 12 1 6.5341 2.2692 -1.2727 13 7 1.6198 2.1089 1.2351 14 16 1.1988 3.7104 1.2099 15 8 0.8222 4.0472 2.5380 16 8 2.2280 4.3848 0.4991 17 6 -0.2579 3.8512 0.2287 18 6 -1.4983 3.8087 0.8374 19 6 -2.6382 3.9209 0.0563 20 6 -4.0087 3.8787 0.6814 21 6 -2.4871 4.0719 -1.3138 22 6 -1.2147 4.1058 -1.8514 23 7 -0.1522 4.0015 -1.0770 24 1 -0.3634 -1.0236 -0.0925 25 1 -0.3634 0.5919 -0.8401 26 1 -0.3633 0.4315 0.9327 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.9056 -0.0880 -2.8881 30 1 1.5884 1.6123 2.0677 31 1 -1.5783 3.6903 1.9078 32 1 -4.3179 4.8895 0.9477 33 1 -4.7194 3.4568 -0.0294 34 1 -3.9804 3.2593 1.5778 35 1 -3.3532 4.1619 -1.9528 36 1 -1.0886 4.2236 -2.9175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198025136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:05 Heat of formation + Delta-G solvation = -73.748055 kcal Electronic energy + Delta-G solvation = -21039.485989 eV Core-core repulsion = 17842.396028 eV Total energy + Delta-G solvation = -3197.089962 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.21949 -38.31908 -37.69189 -36.87307 -35.01278 -34.13520 -32.56365 -32.27366 -28.82437 -28.52492 -25.06756 -24.86761 -23.63297 -21.95101 -20.45264 -18.83597 -18.77141 -18.00479 -17.85219 -17.10528 -16.88825 -16.29806 -15.70483 -15.41107 -15.40263 -14.85639 -14.68783 -13.86894 -13.84170 -13.59083 -13.52688 -13.37324 -13.20833 -13.10146 -13.03757 -13.01810 -12.72325 -12.59754 -12.18330 -12.07171 -11.67962 -11.59320 -11.46409 -10.61540 -10.57073 -10.54555 -10.41346 -10.00835 -8.07490 -6.19484 -0.63394 -0.35494 0.16439 1.42895 1.46386 1.53060 2.09770 2.47236 2.48145 2.83465 3.12146 3.19601 3.71434 3.76759 3.97790 4.02201 4.13537 4.46092 4.53786 4.56377 4.66595 4.68683 4.74558 4.80288 4.85483 5.11302 5.15033 5.20811 5.31100 5.38156 5.59142 5.68691 5.80855 6.03100 6.30025 6.46074 6.69381 6.85671 7.47854 8.95301 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.006100 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.891708 B = 4589.385760 C = 4894.026853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C 0.285 3.715 4 H 0.028 0.972 5 C -0.542 4.542 6 H 0.050 0.950 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.283 1.283 13 N -1.092 6.092 14 S 2.704 3.296 15 O -0.983 6.983 16 O -0.981 6.981 17 C -0.452 4.452 18 C -0.095 4.095 19 C -0.060 4.060 20 C -0.113 4.113 21 C -0.110 4.110 22 C 0.067 3.933 23 N -0.435 5.435 24 H 0.058 0.942 25 H 0.029 0.971 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.264 0.736 30 H 0.417 0.583 31 H 0.164 0.836 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.186 0.814 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.500 3.357 3.360 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C 0.180 3.820 4 H 0.045 0.955 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.774 3.226 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.209 1.209 13 N -0.854 5.854 14 S 2.793 3.207 15 O -0.972 6.972 16 O -0.971 6.971 17 C -0.673 4.673 18 C -0.117 4.117 19 C -0.069 4.069 20 C -0.170 4.170 21 C -0.129 4.129 22 C -0.094 4.094 23 N -0.146 5.146 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.253 0.747 31 H 0.182 0.818 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.203 0.797 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -16.186 4.077 3.085 16.974 hybrid contribution 0.132 -0.396 -0.105 0.430 sum -16.053 3.681 2.980 16.738 Atomic orbital electron populations 1.21699 0.96280 1.00863 1.00432 1.21710 0.94350 0.97762 1.02240 1.18344 0.92831 0.90865 0.79955 0.95452 1.21806 0.93128 1.36807 1.06379 0.93177 1.25544 1.02236 0.94951 0.95191 1.69939 1.36399 1.38677 1.10035 0.85773 0.81108 0.77940 0.77802 1.19160 1.20284 1.20914 1.55246 1.81992 1.29832 1.18362 1.01436 0.73659 0.73233 0.72381 1.93514 1.84775 1.83431 1.35503 1.93543 1.55279 1.73451 1.74838 1.33242 1.18016 1.12761 1.03230 1.22159 0.91641 0.95265 1.02640 1.20935 0.97191 0.94726 0.94059 1.20965 0.89601 1.04430 1.01970 1.22778 0.99526 0.94914 0.95727 1.23631 0.88576 0.95771 1.01442 1.67769 1.35940 1.07072 1.03843 0.92309 0.95133 0.92486 0.93322 0.90475 0.92693 0.74709 0.81831 0.88747 0.88524 0.89918 0.79657 0.79868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.72 71.98 0.70 -4.13 16 2 C -0.12 -5.38 5.37 30.59 0.16 -5.21 16 3 C 0.29 14.14 2.17 44.24 0.10 14.24 16 4 H 0.03 1.52 7.69 -2.39 -0.02 1.50 16 5 C -0.54 -30.65 8.84 25.60 0.23 -30.42 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.02 1.15 5.30 84.66 0.45 1.60 16 8 N -0.91 -51.91 11.30 21.45 0.24 -51.66 16 9 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 13 N -1.09 -45.53 4.93 -172.54 -0.85 -46.38 16 14 S 2.70 113.33 5.72 -56.49 -0.32 113.01 16 15 O -0.98 -39.35 17.18 -128.00 -2.20 -41.55 16 16 O -0.98 -50.98 17.63 -128.00 -2.26 -53.24 16 17 C -0.45 -16.52 6.73 84.69 0.57 -15.95 16 18 C -0.10 -2.64 9.27 22.36 0.21 -2.43 16 19 C -0.06 -1.24 5.92 -19.67 -0.12 -1.35 16 20 C -0.11 -1.26 10.06 71.23 0.72 -0.54 16 21 C -0.11 -2.16 9.82 22.36 0.22 -1.94 16 22 C 0.07 1.86 11.18 84.67 0.95 2.81 16 23 N -0.44 -16.74 9.96 -193.32 -1.92 -18.67 16 24 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.77 7.86 -2.39 -0.02 1.75 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.08 3.92 5.99 -2.39 -0.01 3.91 16 29 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.42 14.76 8.85 -96.75 -0.86 13.90 16 31 H 0.16 3.88 7.54 -2.91 -0.02 3.86 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.10 0.68 8.10 -2.38 -0.02 0.66 16 34 H 0.08 0.84 8.10 -2.39 -0.02 0.82 16 35 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -75.90 320.88 -0.87 -76.77 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.23 Total: 17.89 kcal Atomic # 6 Polarization: -47.52 SS G_CDS: 4.18 Total: -43.34 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -2.53 Total: -116.71 kcal Atomic # 8 Polarization: -90.34 SS G_CDS: -4.46 Total: -94.79 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 113.33 SS G_CDS: -0.32 Total: 113.01 kcal Total: -75.90 -0.87 -76.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198025136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.024 kcal (2) G-P(sol) polarization free energy of solvation -75.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds