Wall clock time and date at job start Tue Mar 31 2020 06:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34742 * 116.99990 * 2 1 4 4 O 1.21507 * 120.00158 * 0.02562 * 3 2 1 5 5 C 1.47403 * 120.00131 * 180.02562 * 3 2 1 6 6 C 1.39961 * 120.19579 * 89.72640 * 5 3 2 7 7 F 1.35091 * 120.09995 * 359.97438 * 6 5 3 8 8 C 1.38218 * 119.79713 * 179.72216 * 6 5 3 9 9 C 1.38311 * 120.19680 * 0.53430 * 8 6 5 10 10 C 1.50697 * 119.80210 * 179.74188 * 9 8 6 11 11 C 1.52995 * 109.47183 * 270.01881 * 10 9 8 12 12 C 1.52999 * 109.47191 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47128 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99907 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00175 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00586 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00009 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47234 * 89.99595 * 17 15 13 19 19 H 1.48497 * 109.47351 * 209.99994 * 17 15 13 20 20 H 1.48506 * 109.46868 * 330.00026 * 17 15 13 21 21 C 1.38306 * 120.39658 * 359.75994 * 9 8 6 22 22 C 1.38214 * 120.19998 * 359.95770 * 21 9 8 23 23 F 1.35098 * 120.10482 * 180.02562 * 22 21 9 24 24 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47070 * 300.00014 * 1 2 3 26 26 H 1.09001 * 109.46626 * 60.00031 * 1 2 3 27 27 H 1.08004 * 119.89976 * 180.29329 * 8 6 5 28 28 H 1.09006 * 109.47080 * 30.01558 * 10 9 8 29 29 H 1.08998 * 109.46987 * 150.01570 * 10 9 8 30 30 H 1.09003 * 109.47433 * 300.00273 * 11 10 9 31 31 H 1.09010 * 109.47002 * 59.99783 * 11 10 9 32 32 H 1.08998 * 109.47502 * 300.00133 * 12 11 10 33 33 H 1.08997 * 109.47270 * 60.00362 * 12 11 10 34 34 H 0.96995 * 120.00657 * 180.02562 * 16 15 13 35 35 H 1.08005 * 119.90453 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.2386 1.3091 -1.2105 7 9 3.5699 1.2682 -2.3836 8 6 5.6185 1.3873 -1.2015 9 6 6.3054 1.4234 -0.0015 10 6 7.8103 1.5029 -0.0020 11 6 8.3956 0.0893 -0.0028 12 6 9.9234 0.1700 -0.0040 13 6 10.5000 -1.2224 -0.0042 14 1 9.8424 -2.0792 -0.0039 15 6 11.8669 -1.4026 -0.0046 16 7 12.3701 -2.6176 -0.0053 17 14 13.0043 0.0792 -0.0044 18 1 13.3061 0.4714 1.3958 19 1 14.2673 -0.2660 -0.7049 20 1 12.3436 1.2105 -0.7038 21 6 5.6194 1.3867 1.1989 22 6 4.2392 1.3144 1.2090 23 9 3.5711 1.2792 2.3826 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 6.1622 1.4164 -2.1342 28 1 8.1457 2.0355 -0.8920 29 1 8.1463 2.0348 0.8880 30 1 8.0602 -0.4434 0.8870 31 1 8.0594 -0.4426 -0.8930 32 1 10.2586 0.7024 -0.8941 33 1 10.2599 0.7019 0.8858 34 1 13.3317 -2.7444 -0.0052 35 1 6.1638 1.4150 2.1312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:07 Heat of formation + Delta-G solvation = -165.146324 kcal Electronic energy + Delta-G solvation = -21378.258111 eV Core-core repulsion = 17591.071685 eV Total energy + Delta-G solvation = -3787.186426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.38521 -49.36149 -40.73389 -39.22675 -36.76923 -35.03729 -32.83388 -31.22548 -30.71873 -28.60723 -27.38581 -24.56436 -23.29820 -22.44512 -21.25089 -20.22295 -18.60368 -17.89644 -17.81870 -17.41865 -16.69822 -16.34161 -16.21253 -16.00680 -15.64428 -15.33091 -14.59227 -14.28631 -14.25350 -13.74004 -13.52932 -13.13406 -13.08992 -12.66416 -12.47880 -12.20263 -12.12415 -11.81951 -11.67301 -11.15061 -11.14891 -10.93041 -10.83468 -10.03509 -9.89454 -9.80383 -9.27716 -9.08354 -9.04895 -8.58384 -6.08341 -4.07208 0.40711 0.67825 1.63967 2.27877 2.99739 3.27102 3.35188 3.35540 3.37083 3.98826 4.20742 4.40804 4.42213 4.43578 4.77598 4.85854 4.86374 5.16541 5.24723 5.30492 5.31500 5.34731 5.46802 5.67066 5.71393 5.90006 5.99926 6.02934 6.39144 6.44877 6.50286 6.77806 7.20828 7.25368 7.33317 7.73826 8.48765 8.96568 9.53602 11.05104 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.030525 B = 0.003167 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.061761 B = 8840.138436 C = 8932.729362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.345 6.345 3 C 0.524 3.476 4 O -0.486 6.486 5 C -0.199 4.199 6 C 0.173 3.827 7 F -0.123 7.123 8 C -0.161 4.161 9 C 0.017 3.983 10 C -0.094 4.094 11 C -0.098 4.098 12 C -0.014 4.014 13 C -0.523 4.523 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.161 4.161 22 C 0.173 3.827 23 F -0.123 7.123 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.155 0.845 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.017 0.983 33 H 0.013 0.987 34 H 0.263 0.737 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.832 8.830 -0.014 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.261 6.261 3 C 0.366 3.634 4 O -0.372 6.372 5 C -0.202 4.202 6 C 0.153 3.847 7 F -0.101 7.101 8 C -0.179 4.179 9 C 0.016 3.984 10 C -0.131 4.131 11 C -0.135 4.135 12 C -0.051 4.051 13 C -0.561 4.561 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.542 5.542 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.179 4.179 22 C 0.153 3.847 23 F -0.101 7.101 24 H 0.125 0.875 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.173 0.827 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.971 9.018 -0.017 21.912 hybrid contribution 0.167 0.620 0.023 0.643 sum -19.804 9.639 0.006 22.025 Atomic orbital electron populations 1.23382 0.75582 1.04213 1.02820 1.86684 1.23893 1.32034 1.83520 1.20662 0.88218 0.82065 0.72477 1.90879 1.66309 1.36048 1.43948 1.18854 0.90609 1.17295 0.93455 1.17153 0.89767 0.98592 0.79208 1.91560 1.80617 1.93187 1.44739 1.21128 0.90938 1.05166 1.00716 1.20061 0.97730 0.89866 0.90709 1.21035 0.87105 1.01022 1.03954 1.21512 0.98076 0.92027 1.01932 1.19592 0.91070 0.98049 0.96425 1.21131 0.92244 0.91729 1.50988 0.91019 1.25046 0.98304 0.95645 0.94544 1.69910 1.12482 1.20813 1.50985 0.86772 0.80316 0.83637 0.78499 1.20300 1.21422 1.18965 1.21124 0.90934 1.05177 1.00709 1.17154 0.89771 0.98606 0.79195 1.91562 1.80644 1.93205 1.44695 0.87536 0.91550 0.91558 0.82701 0.90029 0.90035 0.92228 0.92208 0.96458 0.96896 0.92692 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 101.05 1.07 1.34 16 2 O -0.35 -4.23 10.58 -40.61 -0.43 -4.66 16 3 C 0.52 7.28 6.68 34.46 0.23 7.51 16 4 O -0.49 -7.59 16.90 -19.27 -0.33 -7.91 16 5 C -0.20 -2.63 5.76 -104.87 -0.60 -3.24 16 6 C 0.17 2.15 7.29 -38.94 -0.28 1.87 16 7 F -0.12 -1.57 16.83 2.25 0.04 -1.53 16 8 C -0.16 -1.83 9.65 -39.56 -0.38 -2.21 16 9 C 0.02 0.20 5.14 -104.57 -0.54 -0.34 16 10 C -0.09 -1.20 5.33 -27.89 -0.15 -1.35 16 11 C -0.10 -1.68 5.13 -26.73 -0.14 -1.82 16 12 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 13 C -0.52 -14.32 9.66 -34.44 -0.33 -14.66 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 16 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 17 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -5.96 6.54 56.52 0.37 -5.60 16 21 C -0.16 -1.83 9.65 -39.57 -0.38 -2.21 16 22 C 0.17 2.15 7.29 -38.94 -0.28 1.87 16 23 F -0.12 -1.57 16.83 2.25 0.04 -1.53 16 24 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.16 1.50 8.06 -52.48 -0.42 1.07 16 28 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 32 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 33 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -31.74 319.04 -5.92 -37.66 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: -4.15 Total: -4.67 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -2.00 Total: -11.87 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.77 Total: -26.58 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.76 Total: -12.57 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.07 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.74 -5.92 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.483 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds