Wall clock time and date at job start Tue Mar 31 2020 06:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34742 * 116.99990 * 2 1 4 4 O 1.21507 * 120.00158 * 0.02562 * 3 2 1 5 5 C 1.47403 * 120.00131 * 180.02562 * 3 2 1 6 6 C 1.39961 * 120.19579 * 89.72640 * 5 3 2 7 7 F 1.35091 * 120.09995 * 359.97438 * 6 5 3 8 8 C 1.38218 * 119.79713 * 179.72216 * 6 5 3 9 9 C 1.38311 * 120.19680 * 0.53430 * 8 6 5 10 10 C 1.50697 * 119.80210 * 179.74188 * 9 8 6 11 11 C 1.52995 * 109.47183 * 270.01881 * 10 9 8 12 12 C 1.52999 * 109.47191 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47128 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99907 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00175 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00586 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00009 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47234 * 89.99595 * 17 15 13 19 19 H 1.48497 * 109.47351 * 209.99994 * 17 15 13 20 20 H 1.48506 * 109.46868 * 330.00026 * 17 15 13 21 21 C 1.38306 * 120.39658 * 359.75994 * 9 8 6 22 22 C 1.38214 * 120.19998 * 359.95770 * 21 9 8 23 23 F 1.35098 * 120.10482 * 180.02562 * 22 21 9 24 24 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47070 * 300.00014 * 1 2 3 26 26 H 1.09001 * 109.46626 * 60.00031 * 1 2 3 27 27 H 1.08004 * 119.89976 * 180.29329 * 8 6 5 28 28 H 1.09006 * 109.47080 * 30.01558 * 10 9 8 29 29 H 1.08998 * 109.46987 * 150.01570 * 10 9 8 30 30 H 1.09003 * 109.47433 * 300.00273 * 11 10 9 31 31 H 1.09010 * 109.47002 * 59.99783 * 11 10 9 32 32 H 1.08998 * 109.47502 * 300.00133 * 12 11 10 33 33 H 1.08997 * 109.47270 * 60.00362 * 12 11 10 34 34 H 0.96995 * 120.00657 * 180.02562 * 16 15 13 35 35 H 1.08005 * 119.90453 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.2386 1.3091 -1.2105 7 9 3.5699 1.2682 -2.3836 8 6 5.6185 1.3873 -1.2015 9 6 6.3054 1.4234 -0.0015 10 6 7.8103 1.5029 -0.0020 11 6 8.3956 0.0893 -0.0028 12 6 9.9234 0.1700 -0.0040 13 6 10.5000 -1.2224 -0.0042 14 1 9.8424 -2.0792 -0.0039 15 6 11.8669 -1.4026 -0.0046 16 7 12.3701 -2.6176 -0.0053 17 14 13.0043 0.0792 -0.0044 18 1 13.3061 0.4714 1.3958 19 1 14.2673 -0.2660 -0.7049 20 1 12.3436 1.2105 -0.7038 21 6 5.6194 1.3867 1.1989 22 6 4.2392 1.3144 1.2090 23 9 3.5711 1.2792 2.3826 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 6.1622 1.4164 -2.1342 28 1 8.1457 2.0355 -0.8920 29 1 8.1463 2.0348 0.8880 30 1 8.0602 -0.4434 0.8870 31 1 8.0594 -0.4426 -0.8930 32 1 10.2586 0.7024 -0.8941 33 1 10.2599 0.7019 0.8858 34 1 13.3317 -2.7444 -0.0052 35 1 6.1638 1.4150 2.1312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:06 Heat of formation + Delta-G solvation = -182.448187 kcal Electronic energy + Delta-G solvation = -21379.008376 eV Core-core repulsion = 17591.071685 eV Total energy + Delta-G solvation = -3787.936691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.101 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.35017 -50.32567 -41.73273 -40.17561 -37.77218 -36.43406 -34.58175 -32.67928 -31.63477 -29.80561 -28.42459 -25.96239 -24.22495 -23.70093 -22.33868 -21.70715 -19.58183 -19.00047 -18.86117 -18.59529 -18.35259 -17.28273 -17.17896 -16.94819 -16.61536 -16.34688 -16.17653 -15.57805 -15.41689 -14.90838 -14.65287 -14.44210 -14.13788 -14.10326 -13.47793 -13.22915 -13.16496 -13.08293 -13.07609 -12.50710 -12.37645 -12.01722 -11.99947 -11.72984 -11.51276 -11.35193 -11.24886 -10.70352 -10.10965 -10.00108 -8.23639 -6.27800 -0.55174 -0.23282 0.59567 1.38876 1.42288 1.44252 1.55780 2.06776 2.41231 2.41985 3.06042 3.12785 3.27906 3.49647 3.52573 3.98577 4.15271 4.22208 4.29577 4.31942 4.42713 4.43436 4.54429 4.61436 4.73993 4.87138 4.92959 4.96973 5.17186 5.18567 5.30221 5.46944 5.64705 5.71489 5.74691 6.25619 6.35270 6.82317 7.37155 8.93452 Molecular weight = 284.10amu Principal moments of inertia in cm(-1) A = 0.030525 B = 0.003167 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.061761 B = 8840.138436 C = 8932.729362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.354 6.354 3 C 0.523 3.477 4 O -0.511 6.511 5 C -0.211 4.211 6 C 0.163 3.837 7 F -0.128 7.128 8 C -0.150 4.150 9 C 0.014 3.986 10 C -0.082 4.082 11 C -0.093 4.093 12 C -0.015 4.015 13 C -0.532 4.532 14 H 0.028 0.972 15 C -0.003 4.003 16 N -0.958 5.958 17 Si 0.953 3.047 18 H -0.268 1.268 19 H -0.291 1.291 20 H -0.237 1.237 21 C -0.150 4.150 22 C 0.163 3.837 23 F -0.128 7.128 24 H 0.138 0.862 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.175 0.825 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.025 0.975 34 H 0.264 0.736 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.750 10.921 -0.013 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C 0.366 3.634 4 O -0.400 6.400 5 C -0.214 4.214 6 C 0.143 3.857 7 F -0.106 7.106 8 C -0.169 4.169 9 C 0.014 3.986 10 C -0.119 4.119 11 C -0.130 4.130 12 C -0.052 4.052 13 C -0.570 4.570 14 H 0.046 0.954 15 C -0.198 4.198 16 N -0.599 5.599 17 Si 0.777 3.223 18 H -0.193 1.193 19 H -0.218 1.218 20 H -0.160 1.160 21 C -0.169 4.169 22 C 0.143 3.857 23 F -0.106 7.106 24 H 0.156 0.844 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.192 0.808 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -19.922 11.109 -0.017 22.810 hybrid contribution 0.028 -0.166 0.025 0.170 sum -19.895 10.943 0.008 22.706 Atomic orbital electron populations 1.23749 0.73468 1.06478 1.03171 1.86674 1.26075 1.31241 1.82962 1.20865 0.88616 0.82164 0.71796 1.90855 1.66922 1.36826 1.45394 1.19044 0.90539 1.17653 0.94197 1.17242 0.90212 0.99412 0.78853 1.91546 1.80810 1.93328 1.44902 1.21341 0.90420 1.03552 1.01556 1.19977 0.97271 0.90509 0.90863 1.20867 0.87184 0.98008 1.05813 1.21341 0.95223 0.95157 1.01301 1.19580 0.94013 0.94429 0.97165 1.21598 0.92047 0.93527 1.49858 0.95375 1.26108 1.00458 0.98987 0.94293 1.70090 1.12925 1.23738 1.53125 0.85612 0.77541 0.80028 0.79162 1.19264 1.21769 1.15950 1.21338 0.90415 1.03552 1.01549 1.17244 0.90217 0.99422 0.78838 1.91548 1.80838 1.93345 1.44857 0.84357 0.91232 0.91242 0.80795 0.88302 0.88243 0.93001 0.93014 0.95499 0.95645 0.92707 0.80777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.57 113.37 1.20 1.56 16 2 O -0.35 -8.48 10.58 -56.53 -0.60 -9.08 16 3 C 0.52 14.40 6.68 70.24 0.47 14.87 16 4 O -0.51 -16.00 16.90 19.81 0.33 -15.67 16 5 C -0.21 -5.43 5.76 -20.03 -0.12 -5.54 16 6 C 0.16 3.85 7.29 22.68 0.17 4.02 16 7 F -0.13 -3.16 16.83 44.97 0.76 -2.40 16 8 C -0.15 -3.05 9.65 22.28 0.22 -2.84 16 9 C 0.01 0.29 5.14 -19.83 -0.10 0.19 16 10 C -0.08 -1.77 5.33 29.85 0.16 -1.61 16 11 C -0.09 -2.98 5.13 30.59 0.16 -2.82 16 12 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 13 C -0.53 -29.35 9.66 25.60 0.25 -29.10 16 14 H 0.03 1.73 7.99 -2.91 -0.02 1.70 16 15 C 0.00 -0.14 5.47 84.65 0.46 0.32 16 16 N -0.96 -59.44 13.96 21.45 0.30 -59.15 16 17 Si 0.95 42.19 27.47 68.60 1.88 44.08 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 21 C -0.15 -3.04 9.65 22.28 0.22 -2.83 16 22 C 0.16 3.85 7.29 22.68 0.17 4.02 16 23 F -0.13 -3.16 16.83 44.97 0.76 -2.40 16 24 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 28 H 0.10 1.86 8.08 -2.38 -0.02 1.84 16 29 H 0.10 1.85 8.08 -2.39 -0.02 1.83 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.03 1.07 7.20 -2.39 -0.02 1.05 16 33 H 0.03 1.00 7.57 -2.39 -0.02 0.98 16 34 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -70.14 319.04 7.85 -62.30 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: 1.05 Total: 2.56 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 3.36 Total: -20.25 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.30 Total: -59.15 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.26 Total: -24.74 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 1.51 Total: -4.80 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.08 kcal Total: -70.14 7.85 -62.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.151 kcal (2) G-P(sol) polarization free energy of solvation -70.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds