Wall clock time and date at job start Tue Mar 31 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00346 * 2 1 4 4 H 1.48496 * 109.47205 * 270.00325 * 3 2 1 5 5 H 1.48501 * 109.46773 * 30.00511 * 3 2 1 6 6 H 1.48501 * 109.47413 * 150.00013 * 3 2 1 7 7 C 1.38810 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99853 * 156.85987 * 7 2 1 9 9 N 1.36941 * 120.00286 * 336.86238 * 7 2 1 10 10 C 1.46496 * 119.99760 * 320.84851 * 9 7 2 11 11 C 1.50704 * 109.47248 * 264.14136 * 10 9 7 12 12 C 1.38229 * 120.00378 * 85.14321 * 11 10 9 13 13 C 1.38238 * 120.00401 * 180.25633 * 12 11 10 14 14 C 1.38238 * 119.99550 * 359.53523 * 13 12 11 15 15 C 1.38233 * 119.99862 * 0.42476 * 14 13 12 16 16 C 1.38229 * 120.00212 * 359.80811 * 15 14 13 17 17 C 1.46503 * 120.00118 * 140.84699 * 9 7 2 18 18 C 1.50692 * 109.47305 * 270.00223 * 17 9 7 19 19 C 1.38255 * 120.38642 * 269.72813 * 18 17 9 20 20 N 1.31852 * 120.88737 * 179.70087 * 19 18 17 21 21 C 1.31845 * 121.77712 * 0.58578 * 20 19 18 22 22 C 1.38705 * 120.68482 * 359.70066 * 21 20 19 23 23 O 1.35906 * 120.47815 * 180.02562 * 22 21 20 24 24 C 1.38531 * 120.39414 * 89.99926 * 18 17 9 25 25 H 0.96999 * 119.99625 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47327 * 144.13963 * 10 9 7 27 27 H 1.08997 * 109.47199 * 24.13678 * 10 9 7 28 28 H 1.08006 * 120.00018 * 359.97438 * 12 11 10 29 29 H 1.08000 * 120.00240 * 179.73088 * 13 12 11 30 30 H 1.07995 * 119.99797 * 180.20724 * 14 13 12 31 31 H 1.08006 * 119.99762 * 179.78500 * 15 14 13 32 32 H 1.08007 * 120.00075 * 179.97438 * 16 15 14 33 33 H 1.09004 * 109.46867 * 30.00173 * 17 9 7 34 34 H 1.08995 * 109.46748 * 149.99993 * 17 9 7 35 35 H 1.08000 * 119.56186 * 359.97438 * 19 18 17 36 36 H 1.07998 * 119.65810 * 179.73048 * 21 20 19 37 37 H 0.96706 * 113.99989 * 269.98330 * 23 22 21 38 38 H 1.08004 * 120.80801 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0250 -1.2397 -0.3681 9 7 1.4081 -2.3406 0.4649 10 6 0.5409 -2.2809 1.6441 11 6 1.3342 -2.6522 2.8705 12 6 2.0734 -1.6903 3.5330 13 6 2.8053 -2.0320 4.6548 14 6 2.7902 -3.3338 5.1197 15 6 2.0503 -4.2955 4.4577 16 6 1.3223 -3.9548 3.3331 17 6 1.6312 -3.6183 -0.2163 18 6 0.5872 -3.8059 -1.2867 19 6 -0.6054 -4.4423 -0.9965 20 7 -1.5281 -4.6065 -1.9239 21 6 -1.3519 -4.1854 -3.1608 22 6 -0.1792 -3.5431 -3.5297 23 8 -0.0023 -3.1103 -4.8058 24 6 0.8133 -3.3477 -2.5743 25 1 -0.4849 0.8401 0.0004 26 1 -0.2872 -2.9790 1.5219 27 1 0.1500 -1.2696 1.7568 28 1 2.0829 -0.6725 3.1715 29 1 3.3864 -1.2813 5.1699 30 1 3.3594 -3.6000 5.9981 31 1 2.0413 -5.3134 4.8189 32 1 0.7445 -4.7064 2.8156 33 1 2.6219 -3.6195 -0.6709 34 1 1.5617 -4.4319 0.5057 35 1 -0.7855 -4.8059 0.0044 36 1 -2.1290 -4.3419 -3.8944 37 1 0.4081 -3.7633 -5.3892 38 1 1.7374 -2.8506 -2.8302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232044607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:59 Heat of formation + Delta-G solvation = 36.857115 kcal Electronic energy + Delta-G solvation = -21860.218248 eV Core-core repulsion = 18668.313629 eV Total energy + Delta-G solvation = -3191.904619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.82574 -38.63871 -36.93672 -35.71174 -32.53383 -31.64873 -30.31565 -30.23666 -29.45182 -26.09532 -25.62526 -22.96229 -22.58891 -21.94326 -21.14396 -20.09645 -17.73251 -17.02081 -16.42673 -16.15882 -15.95810 -15.12881 -14.64699 -14.55909 -14.37014 -13.95320 -13.51738 -13.26178 -12.85803 -12.70101 -12.59930 -12.43230 -11.99337 -11.93477 -11.64528 -11.13432 -10.94147 -10.82539 -10.71363 -10.59736 -10.25862 -10.17125 -9.99141 -8.99609 -8.89187 -8.62550 -8.36133 -8.25769 -8.06373 -6.77656 -5.99114 -3.51881 1.58327 1.84959 1.96390 2.01342 3.26375 3.35630 3.37954 4.18640 4.34030 4.42868 4.49014 5.04410 5.17434 5.39313 5.41044 5.43505 5.51953 5.57056 5.60443 5.74273 5.80186 5.84746 6.08594 6.15072 6.23892 6.33288 6.41364 6.51710 6.63586 6.69137 6.71560 6.97248 7.00464 7.07325 7.12546 7.29955 7.47852 7.63758 7.68214 7.88966 8.34270 8.48962 8.98125 9.58983 10.19239 11.02547 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.006486 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.427954 B = 4315.796332 C = 5881.683999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.023 3.977 3 Si 0.891 3.109 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.267 4.267 8 H 0.062 0.938 9 N -0.560 5.560 10 C 0.183 3.817 11 C -0.074 4.074 12 C -0.097 4.097 13 C -0.127 4.127 14 C -0.142 4.142 15 C -0.129 4.129 16 C -0.124 4.124 17 C 0.178 3.822 18 C -0.103 4.103 19 C 0.088 3.912 20 N -0.474 5.474 21 C 0.051 3.949 22 C 0.049 3.951 23 O -0.495 6.495 24 C -0.081 4.081 25 H 0.258 0.742 26 H 0.035 0.965 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.382 0.618 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 -8.374 1.295 8.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.180 4.180 3 Si 0.719 3.281 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.397 4.397 8 H 0.080 0.920 9 N -0.277 5.277 10 C 0.057 3.943 11 C -0.077 4.077 12 C -0.116 4.116 13 C -0.145 4.145 14 C -0.161 4.161 15 C -0.147 4.147 16 C -0.142 4.142 17 C 0.052 3.948 18 C -0.109 4.109 19 C -0.070 4.070 20 N -0.184 5.184 21 C -0.107 4.107 22 C 0.003 3.997 23 O -0.302 6.302 24 C -0.108 4.108 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.113 0.887 28 H 0.137 0.863 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.236 0.764 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.560 -8.085 1.704 8.409 hybrid contribution 1.339 1.148 -0.523 1.840 sum 2.899 -6.937 1.181 7.611 Atomic orbital electron populations 1.70082 1.05656 1.26293 1.48910 1.25256 0.94891 0.99001 0.98836 0.86506 0.79817 0.83639 0.78145 1.21011 1.21267 1.19951 1.18976 0.94700 0.85498 1.40517 0.92032 1.43830 1.55661 1.03558 1.24654 1.19903 0.89859 1.02642 0.81882 1.21189 0.97353 0.92721 0.96415 1.21105 0.96112 1.00009 0.94361 1.21096 0.99902 0.96145 0.97405 1.20913 1.01047 0.93735 1.00379 1.20988 0.98453 0.98583 0.96649 1.21051 1.00214 0.96227 0.96744 1.20057 0.94142 0.89875 0.90752 1.21982 0.99096 0.94495 0.95295 1.22471 0.89482 0.97194 0.97903 1.67542 1.31218 1.18515 1.01097 1.22759 0.96461 0.97437 0.94077 1.19537 0.95306 0.99262 0.85580 1.84879 1.83785 1.43127 1.18442 1.21702 0.99198 0.97055 0.92888 0.93211 0.94645 0.88700 0.86258 0.87135 0.87321 0.87217 0.87005 0.92523 0.93009 0.83666 0.83594 0.76404 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.92 11.81 55.49 0.66 -23.27 16 2 C 0.02 0.60 4.82 -17.43 -0.08 0.52 16 3 Si 0.89 20.56 29.61 -169.99 -5.03 15.53 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.27 -6.72 9.42 -15.06 -0.14 -6.86 16 8 H 0.06 1.57 7.93 -52.49 -0.42 1.15 16 9 N -0.56 -12.62 2.38 -175.99 -0.42 -13.04 16 10 C 0.18 3.97 5.36 -5.19 -0.03 3.94 16 11 C -0.07 -1.42 5.45 -104.62 -0.57 -1.99 16 12 C -0.10 -1.84 9.72 -39.58 -0.38 -2.22 16 13 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 14 C -0.14 -2.12 10.05 -39.58 -0.40 -2.51 16 15 C -0.13 -1.92 10.05 -39.59 -0.40 -2.32 16 16 C -0.12 -2.06 9.58 -39.58 -0.38 -2.44 16 17 C 0.18 3.44 5.83 -5.20 -0.03 3.41 16 18 C -0.10 -1.99 5.48 -104.51 -0.57 -2.56 16 19 C 0.09 1.64 10.85 -17.54 -0.19 1.45 16 20 N -0.47 -8.99 10.36 -13.12 -0.14 -9.13 16 21 C 0.05 0.89 11.14 -17.37 -0.19 0.70 16 22 C 0.05 0.88 6.74 -39.07 -0.26 0.62 16 23 O -0.49 -7.66 13.53 -19.45 -0.26 -7.92 16 24 C -0.08 -1.56 9.81 -39.14 -0.38 -1.94 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.04 0.74 8.03 -51.93 -0.42 0.33 16 27 H 0.10 2.36 5.78 -51.93 -0.30 2.06 16 28 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 32 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.06 1.07 7.99 -51.93 -0.42 0.65 16 34 H 0.05 0.89 7.92 -51.93 -0.41 0.48 16 35 H 0.15 2.44 8.06 -52.49 -0.42 2.02 16 36 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.38 3.62 9.06 45.56 0.41 4.03 16 38 H 0.13 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -29.84 332.85 -8.66 -38.50 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.06 Total: 9.00 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -4.42 Total: -14.69 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.10 Total: -45.44 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.26 Total: -7.92 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.84 -8.66 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232044607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.355 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds