Wall clock time and date at job start Tue Mar 31 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99777 * 2 1 4 4 H 1.48502 * 109.47075 * 269.99990 * 3 2 1 5 5 H 1.48500 * 109.47279 * 30.00144 * 3 2 1 6 6 H 1.48500 * 109.47117 * 150.00613 * 3 2 1 7 7 C 1.37875 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99996 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00009 * 179.97438 * 7 2 1 10 10 C 1.53517 * 114.17036 * 179.97438 * 9 7 2 11 11 N 1.47484 * 87.93236 * 220.13967 * 10 9 7 12 12 C 1.46895 * 111.00145 * 138.69940 * 11 10 9 13 13 C 1.50702 * 109.47077 * 169.99564 * 12 11 10 14 14 C 1.34549 * 126.35783 * 89.71871 * 13 12 11 15 15 N 1.34154 * 107.83702 * 180.26603 * 14 13 12 16 16 C 1.31222 * 108.64708 * 359.97438 * 15 14 13 17 17 C 1.47832 * 125.72357 * 180.02562 * 16 15 14 18 18 C 1.39573 * 120.14193 * 179.69672 * 17 16 15 19 19 C 1.37960 * 119.85582 * 179.74666 * 18 17 16 20 20 C 1.38357 * 120.13814 * 0.55140 * 19 18 17 21 21 C 1.38360 * 120.29582 * 359.70070 * 20 19 18 22 22 C 1.37958 * 120.14280 * 0.02562 * 21 20 19 23 23 O 1.34420 * 108.55012 * 0.02562 * 16 15 14 24 24 C 1.47481 * 87.83697 * 27.00858 * 11 10 9 25 25 H 0.96993 * 120.00286 * 359.97438 * 1 2 3 26 26 H 1.08995 * 113.25875 * 312.94622 * 9 7 2 27 27 H 1.08992 * 113.47935 * 105.37039 * 10 9 7 28 28 H 1.09004 * 113.52580 * 334.91029 * 10 9 7 29 29 H 1.09005 * 109.47276 * 50.00162 * 12 11 10 30 30 H 1.08995 * 109.47876 * 290.00592 * 12 11 10 31 31 H 1.08004 * 126.08384 * 0.21931 * 14 13 12 32 32 H 1.08005 * 120.07287 * 359.97438 * 18 17 16 33 33 H 1.07995 * 119.92844 * 180.25406 * 19 18 17 34 34 H 1.08000 * 119.85014 * 179.72135 * 20 19 18 35 35 H 1.08000 * 119.92667 * 180.02562 * 21 20 19 36 36 H 1.07998 * 120.07695 * 180.02562 * 22 21 20 37 37 H 1.08999 * 113.47594 * 87.75350 * 24 11 10 38 38 H 1.08997 * 113.47751 * 218.22231 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.1402 -2.5945 -0.0010 11 7 5.1467 -2.0844 0.9486 12 6 5.4215 -3.0687 2.0038 13 6 6.6176 -2.6247 2.8058 14 6 6.5981 -1.8445 3.9018 15 7 7.8649 -1.6793 4.3113 16 6 8.6578 -2.3362 3.4978 17 6 10.1307 -2.4100 3.6007 18 6 10.8619 -3.1511 2.6711 19 6 12.2367 -3.2117 2.7696 20 6 12.8896 -2.5491 3.7939 21 6 12.1702 -1.8170 4.7217 22 6 10.7956 -1.7438 4.6312 23 8 7.9060 -2.9307 2.5553 24 6 4.1449 -1.0979 1.3940 25 1 -0.4850 0.8400 0.0004 26 1 3.9417 -0.5115 -0.7341 27 1 4.5594 -2.8824 -0.9651 28 1 3.4928 -3.3620 0.4232 29 1 5.6274 -4.0387 1.5511 30 1 4.5545 -3.1505 2.6592 31 1 5.7190 -1.4252 4.3685 32 1 10.3529 -3.6730 1.8742 33 1 12.8040 -3.7813 2.0486 34 1 13.9656 -2.6034 3.8692 35 1 12.6860 -1.3019 5.5186 36 1 10.2352 -1.1717 5.3558 37 1 3.4981 -1.4653 2.1907 38 1 4.5682 -0.1174 1.6122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237375178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:20 Heat of formation + Delta-G solvation = 89.243568 kcal Electronic energy + Delta-G solvation = -20827.044233 eV Core-core repulsion = 17637.411261 eV Total energy + Delta-G solvation = -3189.632971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.21036 -39.35493 -39.17117 -34.71310 -33.27427 -32.45796 -31.25518 -31.16202 -28.33549 -25.89920 -25.16814 -23.75556 -23.23717 -22.23985 -21.45516 -20.75425 -18.78114 -17.98937 -17.15658 -16.62198 -16.42501 -15.65851 -15.26049 -15.17400 -14.66654 -14.44244 -13.85911 -13.71082 -13.70568 -13.29804 -13.20661 -13.10793 -12.60699 -11.96534 -11.75809 -11.60284 -11.37822 -11.33228 -11.12434 -10.64207 -10.37881 -10.15234 -10.02856 -9.90627 -9.58454 -9.28285 -9.22309 -8.63246 -8.36836 -8.17509 -6.16553 -4.18041 0.48793 1.08310 1.78047 2.56016 2.76190 3.26468 3.35470 3.40024 3.58332 3.87233 4.37168 4.54228 4.63701 4.65355 4.80101 4.94798 5.03189 5.08892 5.12895 5.13269 5.32171 5.36824 5.52660 5.69495 5.73213 5.77209 5.97697 5.99730 6.10409 6.15747 6.17464 6.18418 6.26896 6.36603 6.39903 6.58650 6.65831 6.79741 7.25048 7.56992 7.68050 7.72107 8.41258 8.85918 9.46115 10.95648 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.032313 B = 0.003122 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.323330 B = 8966.853279 C = 9202.079930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.075 3.925 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.003 3.997 10 C 0.011 3.989 11 N -0.483 5.483 12 C 0.097 3.903 13 C -0.004 4.004 14 C -0.038 4.038 15 N -0.466 5.466 16 C 0.211 3.789 17 C -0.008 4.008 18 C -0.092 4.092 19 C -0.121 4.121 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.075 4.075 23 O -0.189 6.189 24 C -0.013 4.013 25 H 0.265 0.735 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.185 0.815 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.069 0.931 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.396 -6.340 8.097 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.182 1.182 7 C -0.551 4.551 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.117 4.117 11 N -0.206 5.206 12 C -0.032 4.032 13 C -0.058 4.058 14 C -0.179 4.179 15 N -0.195 5.195 16 C 0.008 3.992 17 C -0.009 4.009 18 C -0.111 4.111 19 C -0.139 4.139 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.094 4.094 23 O -0.075 6.075 24 C -0.142 4.142 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.202 0.798 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.087 0.913 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 23.107 -5.723 8.363 25.231 hybrid contribution -0.755 0.257 -0.161 0.814 sum 22.351 -5.466 8.202 24.428 Atomic orbital electron populations 1.69900 1.06410 1.27235 1.49820 1.25008 0.94647 0.99260 0.93857 0.86884 0.80741 0.83395 0.78773 1.20236 1.21408 1.18181 1.20882 0.88037 0.94587 1.51595 0.90666 1.20491 0.96355 0.92557 0.92288 1.23848 0.91998 0.99840 0.96029 1.68922 1.32364 1.09456 1.09809 1.21169 0.90131 0.97524 0.94334 1.23596 0.82849 1.01240 0.98137 1.23054 0.95325 1.02172 0.97364 1.70548 1.01519 1.20382 1.27040 1.23638 0.93263 0.95624 0.86713 1.17308 0.84255 1.01233 0.98078 1.21290 0.94363 0.97525 0.97968 1.21076 0.93827 1.00178 0.98811 1.21345 1.00220 0.96493 0.94510 1.21109 0.93468 0.99751 0.99675 1.21198 0.94343 0.97300 0.96562 1.84429 1.17532 1.58874 1.46697 1.24552 0.92020 0.95945 1.01691 0.92495 0.92463 0.91128 0.91584 0.89504 0.89872 0.79784 0.85099 0.85275 0.85585 0.85180 0.84444 0.91262 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 20.92 27.14 -169.99 -4.61 16.31 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -5.90 5.68 56.52 0.32 -5.58 16 7 C -0.51 -13.69 9.38 -34.44 -0.32 -14.01 16 8 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.00 0.06 2.95 -91.24 -0.27 -0.21 16 10 C 0.01 0.21 7.25 -7.53 -0.05 0.15 16 11 N -0.48 -8.92 6.32 -246.06 -1.55 -10.48 16 12 C 0.10 1.49 5.36 -4.98 -0.03 1.47 16 13 C 0.00 -0.07 6.97 -35.61 -0.25 -0.32 16 14 C -0.04 -0.60 11.79 -17.84 -0.21 -0.81 16 15 N -0.47 -7.57 10.91 -11.72 -0.13 -7.70 16 16 C 0.21 3.24 7.90 -13.89 -0.11 3.13 16 17 C -0.01 -0.10 5.87 -104.98 -0.62 -0.71 16 18 C -0.09 -0.97 9.72 -39.19 -0.38 -1.35 16 19 C -0.12 -1.00 10.03 -39.64 -0.40 -1.39 16 20 C -0.11 -0.80 10.04 -39.49 -0.40 -1.20 16 21 C -0.12 -1.00 10.03 -39.64 -0.40 -1.40 16 22 C -0.07 -0.80 9.69 -39.19 -0.38 -1.18 16 23 O -0.19 -3.07 10.52 4.08 0.04 -3.02 16 24 C -0.01 -0.27 6.70 -7.53 -0.05 -0.32 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.06 1.33 7.04 -51.93 -0.37 0.96 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.21 7.87 -51.93 -0.41 0.80 16 29 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 30 H 0.08 1.18 7.30 -51.93 -0.38 0.80 16 31 H 0.19 2.53 8.06 -52.48 -0.42 2.11 16 32 H 0.13 1.32 7.90 -52.48 -0.41 0.90 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.14 1.47 7.83 -52.49 -0.41 1.05 16 37 H 0.07 1.38 7.38 -51.93 -0.38 0.99 16 38 H 0.07 1.38 7.11 -51.93 -0.37 1.01 16 LS Contribution 325.13 15.07 4.90 4.90 Total: -1.00 -30.86 325.13 -9.44 -40.31 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.90 Total: 1.61 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -3.96 Total: -16.17 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.91 Total: -43.93 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.02 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.61 Total: 16.31 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.86 -9.44 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237375178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.549 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds