Wall clock time and date at job start Tue Mar 31 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39984 * 120.46192 * 214.20586 * 3 2 1 5 5 C 1.38225 * 118.36593 * 179.75353 * 4 3 2 6 6 C 1.39486 * 119.21012 * 0.51342 * 5 4 3 7 7 C 1.47988 * 119.57080 * 179.75511 * 6 5 4 8 8 O 1.21541 * 120.00139 * 355.54177 * 7 6 5 9 9 N 1.34777 * 120.00003 * 175.55151 * 7 6 5 10 10 C 1.46504 * 120.00001 * 5.81006 * 9 7 6 11 11 C 1.50698 * 109.47242 * 276.72961 * 10 9 7 12 12 H 1.08001 * 120.00300 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99972 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00225 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00079 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47183 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47739 * 119.99799 * 15 13 11 18 18 H 1.48501 * 109.47016 * 240.00236 * 15 13 11 19 19 C 1.46501 * 120.00223 * 185.81327 * 9 7 6 20 20 C 1.52997 * 109.47431 * 265.03717 * 19 9 7 21 21 C 1.52995 * 117.52079 * 116.27909 * 20 19 9 22 22 C 1.52990 * 117.49987 * 184.91302 * 20 19 9 23 23 N 1.32828 * 120.85761 * 359.47491 * 6 5 4 24 24 C 1.31289 * 121.78659 * 0.27702 * 23 6 5 25 25 H 4.52934 * 13.94648 * 359.97438 * 4 2 1 26 26 H 1.08001 * 120.81958 * 0.02562 * 4 3 2 27 27 H 1.08004 * 120.39239 * 180.26793 * 5 4 3 28 28 H 1.08999 * 109.46684 * 36.73097 * 10 9 7 29 29 H 1.09000 * 109.47127 * 156.72746 * 10 9 7 30 30 H 0.97006 * 120.00610 * 180.02562 * 14 13 11 31 31 H 1.09005 * 109.47105 * 145.03016 * 19 9 7 32 32 H 1.09002 * 109.46711 * 25.03646 * 19 9 7 33 33 H 1.09005 * 115.54683 * 330.57841 * 20 19 9 34 34 H 1.09003 * 117.50135 * 214.97394 * 21 20 19 35 35 H 1.09004 * 117.49705 * 359.97438 * 21 20 19 36 36 H 1.09003 * 117.50092 * 359.97184 * 22 20 19 37 37 H 1.09004 * 117.50154 * 144.99840 * 22 20 19 38 38 H 1.08008 * 119.65126 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3152 0.9989 0.6783 5 6 4.6965 0.9547 0.6542 6 6 5.3327 -0.0685 -0.0486 7 6 6.8113 -0.1203 -0.0842 8 8 7.4630 0.7690 0.4273 9 7 7.4351 -1.1535 -0.6840 10 6 6.6549 -2.1584 -1.4104 11 6 6.1252 -3.1816 -0.4392 12 1 6.3471 -3.0922 0.6140 13 6 5.3573 -4.2321 -0.8950 14 7 5.0866 -4.3408 -2.1774 15 14 4.7001 -5.5001 0.3090 16 1 5.1425 -5.1535 1.6835 17 1 3.2162 -5.5122 0.2545 18 1 5.2197 -6.8431 -0.0538 19 6 8.8934 -1.2717 -0.6095 20 6 9.5204 -0.6434 -1.8557 21 6 10.4153 0.5814 -1.6558 22 6 11.0360 -0.7679 -2.0232 23 7 4.6287 -1.0001 -0.6816 24 6 3.3159 -0.9962 -0.6785 25 1 -1.0501 -0.0004 -0.0009 26 1 2.7959 1.7817 1.2111 27 1 5.2763 1.7059 1.1701 28 1 5.8211 -1.6736 -1.9182 29 1 7.2913 -2.6507 -2.1457 30 1 4.5460 -5.0796 -2.4981 31 1 9.1703 -2.3246 -0.5549 32 1 9.2549 -0.7545 0.2793 33 1 8.9097 -0.6787 -2.7579 34 1 10.3934 1.3519 -2.4265 35 1 10.5571 0.9401 -0.6363 36 1 11.5866 -1.2971 -1.2454 37 1 11.4226 -0.8850 -3.0356 38 1 2.7779 -1.7706 -1.2053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728870708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:59 Heat of formation + Delta-G solvation = 101.668008 kcal Electronic energy + Delta-G solvation = -21873.915934 eV Core-core repulsion = 18684.821727 eV Total energy + Delta-G solvation = -3189.094207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.17015 -38.54950 -36.85367 -34.83593 -33.93273 -32.33723 -31.76182 -30.37441 -27.74860 -26.47747 -24.14593 -23.13150 -22.77422 -22.05597 -20.60370 -19.19615 -18.86026 -16.86217 -16.46829 -16.26026 -15.53219 -15.40954 -14.67010 -14.53835 -14.29222 -14.07005 -13.83523 -13.19217 -13.03071 -12.91758 -12.28357 -12.08222 -11.88957 -11.43295 -11.34005 -11.22793 -11.16343 -10.83726 -10.82216 -10.51959 -10.25515 -10.04047 -9.62860 -9.60176 -9.42464 -9.37094 -8.55365 -8.44455 -8.10309 -7.62902 -6.00821 -3.99024 0.77253 1.65964 2.78111 2.93610 3.26930 3.35736 3.39739 3.65068 3.77119 4.16368 4.29435 4.43434 4.50128 4.86118 5.07710 5.10877 5.18740 5.26508 5.35639 5.37749 5.45972 5.54877 5.79869 5.86464 5.93648 6.09482 6.16008 6.16923 6.22993 6.31884 6.37871 6.38826 6.60827 6.87342 6.94832 7.53421 7.55616 7.78826 7.91549 8.28581 8.31983 8.43013 8.91634 9.04092 9.59831 11.07078 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.006929 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.227532 B = 4040.039765 C = 5838.593922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.134 4.134 3 C -0.041 4.041 4 C -0.074 4.074 5 C -0.122 4.122 6 C 0.091 3.909 7 C 0.564 3.436 8 O -0.568 6.568 9 N -0.571 5.571 10 C 0.229 3.771 11 C -0.494 4.494 12 H 0.050 0.950 13 C 0.069 3.931 14 N -0.888 5.888 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.147 3.853 20 C -0.158 4.158 21 C -0.175 4.175 22 C -0.180 4.180 23 N -0.372 5.372 24 C 0.124 3.876 25 H 0.223 0.777 26 H 0.135 0.865 27 H 0.144 0.856 28 H 0.081 0.919 29 H 0.026 0.974 30 H 0.259 0.741 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 8.239 1.592 8.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.044 4.044 4 C -0.100 4.100 5 C -0.143 4.143 6 C -0.047 4.047 7 C 0.351 3.649 8 O -0.449 6.449 9 N -0.299 5.299 10 C 0.110 3.890 11 C -0.534 4.534 12 H 0.069 0.931 13 C -0.133 4.133 14 N -0.528 5.528 15 Si 0.709 3.291 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.211 1.211 19 C 0.024 3.976 20 C -0.178 4.178 21 C -0.212 4.212 22 C -0.218 4.218 23 N -0.081 5.081 24 C -0.036 4.036 25 H 0.240 0.760 26 H 0.153 0.847 27 H 0.162 0.838 28 H 0.098 0.902 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.565 7.887 1.265 8.007 hybrid contribution -1.240 -0.387 1.072 1.684 sum -1.805 7.500 2.337 8.061 Atomic orbital electron populations 1.24789 0.95638 0.99862 0.99893 1.19894 0.91761 1.00918 1.00932 1.17305 0.87624 0.98189 1.01267 1.21425 0.93522 0.97501 0.97544 1.21938 0.94232 0.99100 0.99040 1.21421 0.95067 0.91907 0.96333 1.17836 0.85905 0.82123 0.79002 1.90674 1.66244 1.38586 1.49356 1.48220 1.06336 1.24921 1.50385 1.20078 0.91340 0.85825 0.91749 1.21282 1.30882 1.07441 0.93756 0.93137 1.24736 0.96200 0.97533 0.94818 1.69929 1.38814 1.31360 1.12680 0.86722 0.78827 0.81852 0.81719 1.20068 1.21052 1.21085 1.20945 0.80412 1.00655 0.95636 1.22757 0.92397 1.01725 1.00898 1.22957 1.04614 0.91203 1.02449 1.22905 0.95747 1.00870 1.02279 1.68856 1.06452 1.18698 1.14139 1.23273 0.90183 0.95374 0.94782 0.75977 0.84670 0.83777 0.90200 0.95591 0.93089 0.89979 0.90681 0.87701 0.89513 0.88757 0.88944 0.89153 0.82184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 19.25 29.55 0.57 -1.62 16 2 C -0.13 -1.98 13.28 -38.84 -0.52 -2.49 16 3 C -0.04 -0.68 5.75 -106.68 -0.61 -1.29 16 4 C -0.07 -1.11 9.89 -38.93 -0.39 -1.50 16 5 C -0.12 -2.07 9.61 -39.12 -0.38 -2.44 16 6 C 0.09 1.85 6.59 -82.98 -0.55 1.30 16 7 C 0.56 12.22 7.59 -12.26 -0.09 12.13 16 8 O -0.57 -12.60 15.88 5.33 0.08 -12.52 16 9 N -0.57 -12.30 2.48 -176.12 -0.44 -12.74 16 10 C 0.23 5.51 4.78 -5.19 -0.02 5.48 16 11 C -0.49 -12.84 7.60 -34.44 -0.26 -13.10 16 12 H 0.05 1.37 7.81 -52.49 -0.41 0.96 16 13 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -24.14 13.29 55.43 0.74 -23.41 16 15 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.15 2.73 5.67 -4.04 -0.02 2.71 16 20 C -0.16 -2.60 6.01 -90.63 -0.54 -3.14 16 21 C -0.18 -2.52 10.18 -26.73 -0.27 -2.80 16 22 C -0.18 -2.40 10.25 -26.74 -0.27 -2.68 16 23 N -0.37 -7.94 4.76 -9.49 -0.05 -7.99 16 24 C 0.12 2.35 10.92 -17.15 -0.19 2.16 16 25 H 0.22 1.65 7.80 -54.09 -0.42 1.22 16 26 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 27 H 0.14 2.23 7.63 -52.48 -0.40 1.83 16 28 H 0.08 2.02 5.52 -51.93 -0.29 1.73 16 29 H 0.03 0.66 8.02 -51.93 -0.42 0.24 16 30 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 32 H 0.07 1.39 7.10 -51.93 -0.37 1.02 16 33 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.16 2.99 8.06 -52.48 -0.42 2.57 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -29.33 337.10 -8.06 -37.39 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.81 Total: 3.94 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -3.65 Total: -5.58 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.26 Total: -44.13 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.33 -8.06 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728870708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.057 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds