Wall clock time and date at job start Tue Mar 31 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39984 * 120.46192 * 214.20586 * 3 2 1 5 5 C 1.38225 * 118.36593 * 179.75353 * 4 3 2 6 6 C 1.39486 * 119.21012 * 0.51342 * 5 4 3 7 7 C 1.47988 * 119.57080 * 179.75511 * 6 5 4 8 8 O 1.21541 * 120.00139 * 355.54177 * 7 6 5 9 9 N 1.34777 * 120.00003 * 175.55151 * 7 6 5 10 10 C 1.46504 * 120.00001 * 5.81006 * 9 7 6 11 11 C 1.50698 * 109.47242 * 276.72961 * 10 9 7 12 12 H 1.08001 * 120.00300 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99972 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00225 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00079 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47183 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47739 * 119.99799 * 15 13 11 18 18 H 1.48501 * 109.47016 * 240.00236 * 15 13 11 19 19 C 1.46501 * 120.00223 * 185.81327 * 9 7 6 20 20 C 1.52997 * 109.47431 * 265.03717 * 19 9 7 21 21 C 1.52995 * 117.52079 * 116.27909 * 20 19 9 22 22 C 1.52990 * 117.49987 * 184.91302 * 20 19 9 23 23 N 1.32828 * 120.85761 * 359.47491 * 6 5 4 24 24 C 1.31289 * 121.78659 * 0.27702 * 23 6 5 25 25 H 4.52934 * 13.94648 * 359.97438 * 4 2 1 26 26 H 1.08001 * 120.81958 * 0.02562 * 4 3 2 27 27 H 1.08004 * 120.39239 * 180.26793 * 5 4 3 28 28 H 1.08999 * 109.46684 * 36.73097 * 10 9 7 29 29 H 1.09000 * 109.47127 * 156.72746 * 10 9 7 30 30 H 0.97006 * 120.00610 * 180.02562 * 14 13 11 31 31 H 1.09005 * 109.47105 * 145.03016 * 19 9 7 32 32 H 1.09002 * 109.46711 * 25.03646 * 19 9 7 33 33 H 1.09005 * 115.54683 * 330.57841 * 20 19 9 34 34 H 1.09003 * 117.50135 * 214.97394 * 21 20 19 35 35 H 1.09004 * 117.49705 * 359.97438 * 21 20 19 36 36 H 1.09003 * 117.50092 * 359.97184 * 22 20 19 37 37 H 1.09004 * 117.50154 * 144.99840 * 22 20 19 38 38 H 1.08008 * 119.65126 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3152 0.9989 0.6783 5 6 4.6965 0.9547 0.6542 6 6 5.3327 -0.0685 -0.0486 7 6 6.8113 -0.1203 -0.0842 8 8 7.4630 0.7690 0.4273 9 7 7.4351 -1.1535 -0.6840 10 6 6.6549 -2.1584 -1.4104 11 6 6.1252 -3.1816 -0.4392 12 1 6.3471 -3.0922 0.6140 13 6 5.3573 -4.2321 -0.8950 14 7 5.0866 -4.3408 -2.1774 15 14 4.7001 -5.5001 0.3090 16 1 5.1425 -5.1535 1.6835 17 1 3.2162 -5.5122 0.2545 18 1 5.2197 -6.8431 -0.0538 19 6 8.8934 -1.2717 -0.6095 20 6 9.5204 -0.6434 -1.8557 21 6 10.4153 0.5814 -1.6558 22 6 11.0360 -0.7679 -2.0232 23 7 4.6287 -1.0001 -0.6816 24 6 3.3159 -0.9962 -0.6785 25 1 -1.0501 -0.0004 -0.0009 26 1 2.7959 1.7817 1.2111 27 1 5.2763 1.7059 1.1701 28 1 5.8211 -1.6736 -1.9182 29 1 7.2913 -2.6507 -2.1457 30 1 4.5460 -5.0796 -2.4981 31 1 9.1703 -2.3246 -0.5549 32 1 9.2549 -0.7545 0.2793 33 1 8.9097 -0.6787 -2.7579 34 1 10.3934 1.3519 -2.4265 35 1 10.5571 0.9401 -0.6363 36 1 11.5866 -1.2971 -1.2454 37 1 11.4226 -0.8850 -3.0356 38 1 2.7779 -1.7706 -1.2053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728870708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:58 Heat of formation + Delta-G solvation = 87.332236 kcal Electronic energy + Delta-G solvation = -21874.537580 eV Core-core repulsion = 18684.821727 eV Total energy + Delta-G solvation = -3189.715853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.66320 -40.06050 -38.19868 -36.51102 -35.14886 -34.30479 -33.10325 -31.66736 -29.51958 -28.10451 -25.63751 -24.65532 -24.47569 -23.17914 -21.96530 -20.70881 -19.99941 -18.62553 -18.17991 -17.91969 -16.93243 -16.54693 -16.40182 -16.20547 -15.76121 -15.56222 -15.15348 -14.66998 -14.46791 -14.34050 -14.18112 -13.57076 -13.44081 -13.09731 -12.85241 -12.63741 -12.58019 -12.41665 -12.32475 -12.10465 -11.67948 -11.66492 -11.30529 -11.10924 -10.80579 -10.77802 -10.47570 -9.81099 -9.70473 -9.35513 -8.04110 -6.08475 -0.58046 0.33768 1.36650 1.40651 1.48571 1.55761 1.75098 2.20168 2.32715 2.47916 2.94242 3.07043 3.19891 3.30235 3.43321 3.77503 3.85023 3.87788 4.02866 4.12125 4.14929 4.28045 4.40324 4.65529 4.76138 4.78196 4.82507 4.86373 5.01397 5.02661 5.05857 5.15222 5.28579 5.30140 5.49983 5.62136 5.90344 5.95800 6.28508 6.53401 6.55364 6.88850 7.01557 7.30417 7.54169 9.03374 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.006929 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.227532 B = 4040.039765 C = 5838.593922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.204 4.204 3 C -0.022 4.022 4 C -0.063 4.063 5 C -0.111 4.111 6 C 0.054 3.946 7 C 0.559 3.441 8 O -0.579 6.579 9 N -0.578 5.578 10 C 0.249 3.751 11 C -0.495 4.495 12 H 0.032 0.968 13 C 0.034 3.966 14 N -0.913 5.913 15 Si 0.933 3.067 16 H -0.281 1.281 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.147 3.853 20 C -0.185 4.185 21 C -0.169 4.169 22 C -0.154 4.154 23 N -0.406 5.406 24 C 0.099 3.901 25 H 0.269 0.731 26 H 0.177 0.823 27 H 0.160 0.840 28 H 0.069 0.931 29 H 0.005 0.995 30 H 0.261 0.739 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 9.276 2.505 10.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.205 4.205 3 C -0.024 4.024 4 C -0.088 4.088 5 C -0.132 4.132 6 C -0.083 4.083 7 C 0.347 3.653 8 O -0.462 6.462 9 N -0.306 5.306 10 C 0.129 3.871 11 C -0.534 4.534 12 H 0.051 0.949 13 C -0.166 4.166 14 N -0.554 5.554 15 Si 0.760 3.240 16 H -0.206 1.206 17 H -0.205 1.205 18 H -0.205 1.205 19 C 0.024 3.976 20 C -0.205 4.205 21 C -0.206 4.206 22 C -0.191 4.191 23 N -0.115 5.115 24 C -0.061 4.061 25 H 0.285 0.715 26 H 0.195 0.805 27 H 0.177 0.823 28 H 0.087 0.913 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.111 8.925 2.180 9.427 hybrid contribution -0.934 -0.622 0.812 1.385 sum -3.046 8.303 2.992 9.336 Atomic orbital electron populations 1.25855 0.96302 0.95996 0.95695 1.19953 0.91928 1.04289 1.04337 1.17380 0.89073 0.96839 0.99133 1.21839 0.92601 0.97740 0.96622 1.22127 0.95300 0.98008 0.97767 1.21383 0.94366 0.93726 0.98837 1.18153 0.86831 0.81793 0.78527 1.90635 1.66809 1.38779 1.49955 1.48211 1.07433 1.24559 1.50353 1.19649 0.90669 0.85693 0.91085 1.21263 1.31052 1.08179 0.92938 0.94934 1.25250 0.96376 0.98922 0.96018 1.70010 1.39523 1.31998 1.13837 0.85910 0.78452 0.80010 0.79650 1.20620 1.20460 1.20548 1.21027 0.79082 1.00624 0.96863 1.22573 0.94246 1.04437 0.99196 1.23001 1.03357 0.91486 1.02760 1.23027 0.92873 0.99482 1.03763 1.68575 1.07806 1.19927 1.15200 1.23205 0.89709 0.96722 0.96481 0.71528 0.80526 0.82279 0.91348 0.97659 0.92964 0.90512 0.90749 0.89392 0.88364 0.89012 0.87633 0.87293 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 19.25 74.32 1.43 -0.92 16 2 C -0.20 -5.50 13.28 30.02 0.40 -5.10 16 3 C -0.02 -0.69 5.75 -21.20 -0.12 -0.82 16 4 C -0.06 -1.77 9.89 22.69 0.22 -1.54 16 5 C -0.11 -3.70 9.61 22.57 0.22 -3.48 16 6 C 0.05 2.27 6.59 41.88 0.28 2.55 16 7 C 0.56 25.13 7.59 86.83 0.66 25.79 16 8 O -0.58 -26.26 15.88 -3.84 -0.06 -26.33 16 9 N -0.58 -26.18 2.48 -829.39 -2.05 -28.24 16 10 C 0.25 12.67 4.78 85.63 0.41 13.07 16 11 C -0.49 -26.78 7.60 25.60 0.19 -26.59 16 12 H 0.03 1.84 7.81 -2.91 -0.02 1.82 16 13 C 0.03 1.82 5.46 84.65 0.46 2.28 16 14 N -0.91 -50.98 13.29 21.45 0.28 -50.70 16 15 Si 0.93 43.43 29.54 68.60 2.03 45.46 16 16 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 19 C 0.15 5.68 5.67 86.38 0.49 6.17 16 20 C -0.19 -6.20 6.01 -10.80 -0.06 -6.26 16 21 C -0.17 -4.75 10.18 30.59 0.31 -4.44 16 22 C -0.15 -3.90 10.25 30.59 0.31 -3.59 16 23 N -0.41 -18.08 4.76 -183.93 -0.87 -18.95 16 24 C 0.10 3.88 10.92 85.18 0.93 4.81 16 25 H 0.27 2.26 7.80 -4.41 -0.03 2.22 16 26 H 0.18 3.45 8.06 -2.91 -0.02 3.43 16 27 H 0.16 4.73 7.63 -2.91 -0.02 4.70 16 28 H 0.07 3.68 5.52 -2.39 -0.01 3.67 16 29 H 0.01 0.29 8.02 -2.39 -0.02 0.27 16 30 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 31 H 0.08 2.96 8.11 -2.38 -0.02 2.94 16 32 H 0.07 2.84 7.10 -2.39 -0.02 2.82 16 33 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 34 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.09 2.63 8.03 -2.38 -0.02 2.61 16 36 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.15 5.95 8.06 -2.91 -0.02 5.93 16 Total: -1.00 -65.84 337.10 6.51 -59.33 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 1.06 Total: 17.49 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 6.13 Total: 1.93 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -2.64 Total: -97.89 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.06 Total: -26.33 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -65.84 6.51 -59.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728870708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.659 kcal (2) G-P(sol) polarization free energy of solvation -65.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds