Wall clock time and date at job start Tue Mar 31 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31885 * 119.61878 * 2 1 4 4 C 1.31855 * 121.72932 * 179.97438 * 3 2 1 5 5 C 1.38228 * 120.76201 * 0.02562 * 4 3 2 6 6 C 1.38637 * 119.16023 * 359.97438 * 5 4 3 7 7 C 1.38179 * 119.61786 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.41730 * 0.02562 * 7 2 1 9 9 N 1.46500 * 109.46639 * 79.98185 * 8 7 2 10 10 C 1.39678 * 119.99805 * 179.97438 * 9 8 7 11 11 C 1.39010 * 120.03612 * 359.72548 * 10 9 8 12 12 C 1.38156 * 120.05692 * 179.69611 * 11 10 9 13 13 C 1.38172 * 120.13986 * 0.59965 * 12 11 10 14 14 C 1.38911 * 120.08064 * 359.67769 * 13 12 11 15 15 O 1.35749 * 120.02799 * 180.02562 * 14 13 12 16 16 C 1.34834 * 116.99971 * 174.48216 * 15 14 13 17 17 H 1.07995 * 119.99921 * 5.05812 * 16 15 14 18 18 C 1.38656 * 120.00036 * 185.05697 * 16 15 14 19 19 N 1.31557 * 119.99894 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99704 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47237 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46833 * 120.00249 * 20 18 16 23 23 H 1.48500 * 109.47299 * 239.99977 * 20 18 16 24 24 C 1.38742 * 120.04144 * 179.97438 * 10 9 8 25 25 H 1.08993 * 109.47333 * 89.99536 * 1 2 3 26 26 H 1.08996 * 109.47185 * 210.00135 * 1 2 3 27 27 H 1.09010 * 109.46880 * 329.99551 * 1 2 3 28 28 H 1.07999 * 119.62060 * 179.97438 * 4 3 2 29 29 H 1.07996 * 120.42317 * 179.97438 * 5 4 3 30 30 H 1.07995 * 120.78782 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47194 * 199.97628 * 8 7 2 32 32 H 1.08997 * 109.47137 * 319.98192 * 8 7 2 33 33 H 0.96996 * 120.00569 * 0.02562 * 9 8 7 34 34 H 1.07995 * 119.97316 * 359.97438 * 11 10 9 35 35 H 1.08000 * 119.92594 * 180.27627 * 12 11 10 36 36 H 1.08005 * 119.95315 * 179.69582 * 13 12 11 37 37 H 0.96999 * 119.99669 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.07489 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1587 1.1465 0.0000 4 6 3.4764 1.1951 0.0005 5 6 4.2266 0.0341 0.0005 6 6 3.5765 -1.1903 0.0005 7 6 2.1898 -1.2012 -0.0005 8 6 1.4371 -2.5068 -0.0017 9 7 0.9856 -2.8089 -1.3623 10 6 0.2618 -3.9765 -1.6148 11 6 -0.0256 -4.8552 -0.5768 12 6 -0.7469 -6.0071 -0.8250 13 6 -1.1740 -6.2955 -2.1070 14 6 -0.8851 -5.4244 -3.1496 15 8 -1.3057 -5.7085 -4.4087 16 6 -1.0925 -4.7690 -5.3520 17 1 -0.5347 -3.8767 -5.1090 18 6 -1.5894 -4.9484 -6.6339 19 7 -2.2692 -6.0351 -6.9298 20 14 -1.2933 -3.6470 -7.9409 21 1 -0.5070 -2.5302 -7.3583 22 1 -0.5400 -4.2446 -9.0726 23 1 -2.5971 -3.1321 -8.4311 24 6 -0.1667 -4.2631 -2.9029 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 3.9752 2.1530 0.0001 29 1 5.3056 0.0803 0.0005 30 1 4.1367 -2.1136 0.0010 31 1 2.0922 -3.3042 0.3491 32 1 0.5736 -2.4289 0.6588 33 1 1.1899 -2.1985 -2.0879 34 1 0.3113 -4.6351 0.4254 35 1 -0.9729 -6.6861 -0.0161 36 1 -1.7335 -7.1993 -2.2984 37 1 -2.6165 -6.1608 -7.8267 38 1 0.0584 -3.5839 -3.7119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779588564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:18 Heat of formation + Delta-G solvation = 34.555788 kcal Electronic energy + Delta-G solvation = -20950.814026 eV Core-core repulsion = 17758.809614 eV Total energy + Delta-G solvation = -3192.004412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62978 -39.01178 -37.10154 -35.15248 -33.22244 -32.62715 -32.09415 -29.37806 -28.42176 -27.71440 -25.74284 -25.21971 -22.86753 -22.04792 -21.56876 -20.46734 -17.89092 -17.48718 -16.99828 -16.57793 -15.87471 -15.20600 -15.01139 -14.65131 -14.31091 -14.07729 -13.94645 -13.69142 -13.42795 -13.26752 -13.06816 -12.81684 -12.60695 -12.34116 -12.26899 -11.67777 -11.62423 -11.31415 -10.95181 -10.79621 -10.60839 -10.38447 -10.01633 -9.68213 -9.41113 -9.37364 -9.09175 -8.75507 -7.34755 -6.78952 -6.40320 -3.99464 0.79766 1.02618 2.38387 2.56862 3.14650 3.15836 3.20937 3.43126 3.96180 4.00941 4.08962 4.44728 4.57152 4.65214 4.70543 4.78615 5.15155 5.18122 5.29240 5.38092 5.44413 5.47898 5.49728 5.63142 5.69970 5.90914 5.94519 5.98217 6.07819 6.28030 6.36175 6.47008 6.62647 6.65332 7.03212 7.16506 7.39127 7.49411 7.66287 7.75876 7.99639 8.06003 8.18163 9.06078 9.78583 10.78130 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.004013 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.510637 B = 6975.266595 C = 8152.989534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.147 3.853 3 N -0.488 5.488 4 C 0.105 3.895 5 C -0.184 4.184 6 C -0.054 4.054 7 C -0.154 4.154 8 C 0.177 3.823 9 N -0.749 5.749 10 C 0.249 3.751 11 C -0.280 4.280 12 C -0.040 4.040 13 C -0.236 4.236 14 C 0.190 3.810 15 O -0.179 6.179 16 C -0.389 4.389 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.939 3.061 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.301 4.301 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.155 0.845 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.395 0.605 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.268 0.732 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.149 10.692 14.208 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.009 3.991 3 N -0.198 5.198 4 C -0.052 4.052 5 C -0.204 4.204 6 C -0.081 4.081 7 C -0.157 4.157 8 C 0.052 3.948 9 N -0.382 5.382 10 C 0.148 3.852 11 C -0.303 4.303 12 C -0.059 4.059 13 C -0.256 4.256 14 C 0.135 3.865 15 O -0.082 6.082 16 C -0.465 4.465 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.764 3.236 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.325 4.325 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.172 0.828 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.229 0.771 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.078 0.922 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.469 11.163 14.098 20.323 hybrid contribution 0.965 0.202 -0.965 1.380 sum 10.434 11.365 13.133 20.261 Atomic orbital electron populations 1.20821 0.88482 1.03562 1.03797 1.21261 0.97209 0.87620 0.92963 1.67579 1.10031 1.29207 1.12951 1.22783 0.89523 0.98513 0.94429 1.22129 1.01522 0.93399 1.03357 1.21579 0.93669 0.98697 0.94120 1.20794 0.94537 0.96285 1.04050 1.19967 0.97125 0.91652 0.86025 1.44493 1.62119 1.23762 1.07802 1.17440 0.89407 0.85237 0.93073 1.20062 1.13836 0.99218 0.97144 1.20376 0.95023 0.95301 0.95176 1.20049 1.11466 1.02638 0.91474 1.19062 0.90059 0.91441 0.85919 1.83988 1.69759 1.41583 1.12830 1.21345 1.35706 1.00394 0.89055 0.89156 1.25263 0.96043 0.97792 0.97434 1.70050 1.33588 1.25435 1.20872 0.85679 0.78383 0.79553 0.79983 1.19256 1.20207 1.20163 1.20497 1.13460 1.02931 0.95566 0.89855 0.90066 0.90596 0.82761 0.84727 0.84595 0.91805 0.91249 0.77142 0.87878 0.87196 0.86918 0.92170 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.77 36.00 0.35 -0.81 16 2 C 0.15 1.72 6.78 -82.59 -0.56 1.16 16 3 N -0.49 -5.89 10.27 -9.48 -0.10 -5.99 16 4 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 5 C -0.18 -1.58 10.11 -39.44 -0.40 -1.98 16 6 C -0.05 -0.52 9.82 -39.27 -0.39 -0.90 16 7 C -0.15 -1.69 5.26 -104.48 -0.55 -2.24 16 8 C 0.18 2.04 4.44 -5.19 -0.02 2.02 16 9 N -0.75 -10.86 5.72 -59.83 -0.34 -11.21 16 10 C 0.25 4.55 6.65 -83.81 -0.56 3.99 16 11 C -0.28 -4.83 9.31 -39.33 -0.37 -5.20 16 12 C -0.04 -0.72 10.03 -39.64 -0.40 -1.12 16 13 C -0.24 -5.09 9.99 -39.36 -0.39 -5.49 16 14 C 0.19 4.67 6.64 -39.14 -0.26 4.41 16 15 O -0.18 -5.17 9.76 0.04 0.00 -5.17 16 16 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 17 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 20 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 C -0.30 -6.60 9.01 -39.20 -0.35 -6.95 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.08 0.81 6.12 -51.93 -0.32 0.50 16 27 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 28 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.06 0.70 7.83 -51.93 -0.41 0.30 16 32 H 0.07 0.77 6.24 -51.93 -0.32 0.45 16 33 H 0.39 5.67 8.47 -40.82 -0.35 5.33 16 34 H 0.10 1.50 6.73 -52.49 -0.35 1.15 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.11 2.37 8.06 -52.48 -0.42 1.95 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.12 2.75 5.64 -52.48 -0.30 2.46 16 LS Contribution 325.38 15.07 4.90 4.90 Total: -1.00 -32.10 325.38 -8.10 -40.20 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.41 Total: 8.35 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -3.89 Total: -22.03 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.32 Total: -42.06 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.17 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.10 -8.10 -40.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779588564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.759 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds