Wall clock time and date at job start Tue Mar 31 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31885 * 119.61878 * 2 1 4 4 C 1.31855 * 121.72932 * 179.97438 * 3 2 1 5 5 C 1.38228 * 120.76201 * 0.02562 * 4 3 2 6 6 C 1.38637 * 119.16023 * 359.97438 * 5 4 3 7 7 C 1.38179 * 119.61786 * 180.02562 * 2 1 3 8 8 C 1.50701 * 120.41730 * 0.02562 * 7 2 1 9 9 N 1.46500 * 109.46639 * 79.98185 * 8 7 2 10 10 C 1.39678 * 119.99805 * 179.97438 * 9 8 7 11 11 C 1.39010 * 120.03612 * 359.72548 * 10 9 8 12 12 C 1.38156 * 120.05692 * 179.69611 * 11 10 9 13 13 C 1.38172 * 120.13986 * 0.59965 * 12 11 10 14 14 C 1.38911 * 120.08064 * 359.67769 * 13 12 11 15 15 O 1.35749 * 120.02799 * 180.02562 * 14 13 12 16 16 C 1.34834 * 116.99971 * 174.48216 * 15 14 13 17 17 H 1.07995 * 119.99921 * 5.05812 * 16 15 14 18 18 C 1.38656 * 120.00036 * 185.05697 * 16 15 14 19 19 N 1.31557 * 119.99894 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99704 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47237 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46833 * 120.00249 * 20 18 16 23 23 H 1.48500 * 109.47299 * 239.99977 * 20 18 16 24 24 C 1.38742 * 120.04144 * 179.97438 * 10 9 8 25 25 H 1.08993 * 109.47333 * 89.99536 * 1 2 3 26 26 H 1.08996 * 109.47185 * 210.00135 * 1 2 3 27 27 H 1.09010 * 109.46880 * 329.99551 * 1 2 3 28 28 H 1.07999 * 119.62060 * 179.97438 * 4 3 2 29 29 H 1.07996 * 120.42317 * 179.97438 * 5 4 3 30 30 H 1.07995 * 120.78782 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47194 * 199.97628 * 8 7 2 32 32 H 1.08997 * 109.47137 * 319.98192 * 8 7 2 33 33 H 0.96996 * 120.00569 * 0.02562 * 9 8 7 34 34 H 1.07995 * 119.97316 * 359.97438 * 11 10 9 35 35 H 1.08000 * 119.92594 * 180.27627 * 12 11 10 36 36 H 1.08005 * 119.95315 * 179.69582 * 13 12 11 37 37 H 0.96999 * 119.99669 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.07489 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1587 1.1465 0.0000 4 6 3.4764 1.1951 0.0005 5 6 4.2266 0.0341 0.0005 6 6 3.5765 -1.1903 0.0005 7 6 2.1898 -1.2012 -0.0005 8 6 1.4371 -2.5068 -0.0017 9 7 0.9856 -2.8089 -1.3623 10 6 0.2618 -3.9765 -1.6148 11 6 -0.0256 -4.8552 -0.5768 12 6 -0.7469 -6.0071 -0.8250 13 6 -1.1740 -6.2955 -2.1070 14 6 -0.8851 -5.4244 -3.1496 15 8 -1.3057 -5.7085 -4.4087 16 6 -1.0925 -4.7690 -5.3520 17 1 -0.5347 -3.8767 -5.1090 18 6 -1.5894 -4.9484 -6.6339 19 7 -2.2692 -6.0351 -6.9298 20 14 -1.2933 -3.6470 -7.9409 21 1 -0.5070 -2.5302 -7.3583 22 1 -0.5400 -4.2446 -9.0726 23 1 -2.5971 -3.1321 -8.4311 24 6 -0.1667 -4.2631 -2.9029 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 3.9752 2.1530 0.0001 29 1 5.3056 0.0803 0.0005 30 1 4.1367 -2.1136 0.0010 31 1 2.0922 -3.3042 0.3491 32 1 0.5736 -2.4289 0.6588 33 1 1.1899 -2.1985 -2.0879 34 1 0.3113 -4.6351 0.4254 35 1 -0.9729 -6.6861 -0.0161 36 1 -1.7335 -7.1993 -2.2984 37 1 -2.6165 -6.1608 -7.8267 38 1 0.0584 -3.5839 -3.7119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779588564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:18 Heat of formation + Delta-G solvation = 13.966893 kcal Electronic energy + Delta-G solvation = -20951.706827 eV Core-core repulsion = 17758.809614 eV Total energy + Delta-G solvation = -3192.897213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.42869 -40.68302 -38.70814 -36.44788 -34.27626 -33.96622 -33.54574 -30.84957 -29.86124 -28.66284 -27.26409 -26.71852 -23.78771 -23.29024 -22.79523 -21.92071 -19.74904 -19.06605 -17.83141 -17.49819 -17.10161 -16.74666 -16.35569 -15.95848 -15.73800 -15.51433 -15.32343 -14.95307 -14.74510 -14.43646 -14.11520 -13.99575 -13.86941 -13.49102 -13.42452 -13.16521 -12.97216 -12.64883 -12.47606 -12.27904 -12.16778 -12.04073 -11.29387 -10.97437 -10.78631 -10.61449 -10.41543 -9.86798 -9.08267 -8.45253 -8.22930 -6.13188 0.03290 0.28877 0.78745 0.94097 1.33633 1.42977 1.51536 2.17957 2.49211 2.90221 2.93919 3.28718 3.35596 3.61007 3.63068 3.86636 3.91406 4.08134 4.22962 4.41120 4.46336 4.55832 4.63234 4.66869 4.68549 4.70268 4.75431 4.79787 5.06115 5.15278 5.16164 5.17449 5.20433 5.30305 5.47292 5.74849 5.77328 5.83149 6.04518 6.13112 6.59656 6.79620 7.00352 7.00756 7.84535 8.78696 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.004013 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.510637 B = 6975.266595 C = 8152.989534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.130 3.870 3 N -0.517 5.517 4 C 0.096 3.904 5 C -0.178 4.178 6 C -0.059 4.059 7 C -0.163 4.163 8 C 0.177 3.823 9 N -0.739 5.739 10 C 0.259 3.741 11 C -0.261 4.261 12 C -0.025 4.025 13 C -0.262 4.262 14 C 0.152 3.848 15 O -0.233 6.233 16 C -0.409 4.409 17 H 0.098 0.902 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.017 2.983 21 H -0.255 1.255 22 H -0.267 1.267 23 H -0.268 1.268 24 C -0.316 4.316 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.179 0.821 29 H 0.166 0.834 30 H 0.155 0.845 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.395 0.605 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.105 0.895 37 H 0.272 0.728 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.444 12.350 16.655 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.008 4.008 3 N -0.227 5.227 4 C -0.061 4.061 5 C -0.197 4.197 6 C -0.085 4.085 7 C -0.165 4.165 8 C 0.053 3.947 9 N -0.369 5.369 10 C 0.155 3.845 11 C -0.283 4.283 12 C -0.044 4.044 13 C -0.282 4.282 14 C 0.101 3.899 15 O -0.140 6.140 16 C -0.485 4.485 17 H 0.115 0.885 18 C -0.220 4.220 19 N -0.560 5.560 20 Si 0.836 3.164 21 H -0.178 1.178 22 H -0.192 1.192 23 H -0.193 1.193 24 C -0.340 4.340 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.196 0.804 29 H 0.183 0.817 30 H 0.172 0.828 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.229 0.771 34 H 0.163 0.837 35 H 0.171 0.829 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.803 12.858 16.619 24.101 hybrid contribution 0.420 -0.222 -1.354 1.435 sum 12.224 12.636 15.265 23.283 Atomic orbital electron populations 1.20793 0.88493 1.03980 1.03162 1.21388 0.97526 0.88073 0.93771 1.67577 1.11446 1.29642 1.14037 1.23309 0.88981 1.00245 0.93582 1.22474 1.03060 0.92556 1.01634 1.21895 0.93263 0.99987 0.93337 1.20719 0.95184 0.95484 1.05141 1.20148 0.97903 0.92607 0.84022 1.44625 1.60611 1.22175 1.09464 1.17490 0.88676 0.86466 0.91838 1.20565 1.11481 0.97778 0.98524 1.20840 0.93129 0.95953 0.94446 1.20277 1.12875 1.02497 0.92597 1.19636 0.91432 0.93424 0.85375 1.83947 1.72437 1.42932 1.14660 1.21802 1.36132 1.00833 0.89769 0.88487 1.26538 0.95557 1.00296 0.99628 1.70192 1.35966 1.28114 1.21741 0.84560 0.78712 0.76597 0.76507 1.17845 1.19240 1.19275 1.20490 1.14213 1.02193 0.97108 0.90976 0.89512 0.90356 0.80351 0.81679 0.82753 0.90184 0.90233 0.77126 0.83661 0.82946 0.87669 0.91909 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 9.77 71.23 0.70 -1.45 16 2 C 0.13 2.80 6.78 42.53 0.29 3.09 16 3 N -0.52 -11.58 10.27 -183.90 -1.89 -13.47 16 4 C 0.10 1.59 11.18 84.69 0.95 2.53 16 5 C -0.18 -2.41 10.11 22.36 0.23 -2.18 16 6 C -0.06 -0.91 9.82 22.47 0.22 -0.69 16 7 C -0.16 -3.09 5.26 -19.77 -0.10 -3.20 16 8 C 0.18 3.42 4.44 85.63 0.38 3.80 16 9 N -0.74 -19.60 5.72 -343.19 -1.96 -21.56 16 10 C 0.26 8.94 6.65 38.20 0.25 9.20 16 11 C -0.26 -7.99 9.31 22.44 0.21 -7.78 16 12 C -0.03 -0.84 10.03 22.23 0.22 -0.62 16 13 C -0.26 -11.47 9.99 22.42 0.22 -11.25 16 14 C 0.15 7.83 6.64 22.56 0.15 7.98 16 15 O -0.23 -14.46 9.76 -22.78 -0.22 -14.69 16 16 C -0.41 -24.48 9.49 67.92 0.64 -23.84 16 17 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 18 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 19 N -0.92 -57.64 13.67 21.61 0.30 -57.35 16 20 Si 1.02 43.98 29.55 68.60 2.03 46.00 16 21 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 24 C -0.32 -14.13 9.01 22.52 0.20 -13.93 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.09 1.57 6.12 -2.39 -0.01 1.56 16 27 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 29 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 30 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 31 H 0.08 1.36 7.83 -2.39 -0.02 1.34 16 32 H 0.08 1.43 6.24 -2.39 -0.01 1.42 16 33 H 0.39 10.74 8.47 -92.71 -0.79 9.95 16 34 H 0.15 3.31 6.73 -2.91 -0.02 3.29 16 35 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.11 5.08 5.64 -2.91 -0.02 5.06 16 Total: -1.00 -75.22 325.38 3.58 -71.64 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.31 Total: 28.63 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 5.03 Total: -39.20 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -3.56 Total: -92.38 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.22 Total: -14.69 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -75.22 3.58 -71.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779588564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.606 kcal (2) G-P(sol) polarization free energy of solvation -75.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds