Wall clock time and date at job start Tue Mar 31 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35685 * 117.00358 * 2 1 4 4 C 1.38616 * 119.64728 * 179.97438 * 3 2 1 5 5 C 1.39245 * 119.01348 * 180.02562 * 4 3 2 6 6 N 1.39202 * 120.83505 * 180.27770 * 5 4 3 7 7 C 1.38891 * 120.00117 * 334.95427 * 6 5 4 8 8 C 1.39587 * 119.84060 * 327.92544 * 7 6 5 9 9 C 1.36326 * 120.15576 * 179.75501 * 8 7 6 10 10 C 1.40895 * 119.83813 * 0.54270 * 9 8 7 11 11 C 1.41116 * 120.15139 * 179.69676 * 10 9 8 12 12 H 1.08002 * 119.99547 * 207.69617 * 11 10 9 13 13 C 1.39852 * 120.00594 * 27.69274 * 11 10 9 14 14 N 1.30914 * 119.99725 * 12.44612 * 13 11 10 15 15 Si 1.86792 * 120.00375 * 192.44092 * 13 11 10 16 16 H 1.48511 * 109.46980 * 60.00444 * 15 13 11 17 17 H 1.48507 * 109.47470 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47277 * 300.00461 * 15 13 11 19 19 C 1.40900 * 119.68880 * 359.71051 * 10 9 8 20 20 C 1.36316 * 119.83768 * 0.02562 * 19 10 9 21 21 C 1.39665 * 118.32553 * 0.02562 * 5 4 3 22 22 C 1.37762 * 119.19214 * 359.97438 * 21 5 4 23 23 C 1.50700 * 119.54319 * 180.02562 * 22 21 5 24 24 N 1.32079 * 120.91473 * 0.02562 * 22 21 5 25 25 H 1.09004 * 109.47067 * 299.99460 * 1 2 3 26 26 H 1.09000 * 109.47413 * 59.99940 * 1 2 3 27 27 H 1.09003 * 109.47179 * 179.97438 * 1 2 3 28 28 H 1.07994 * 120.49303 * 0.02791 * 4 3 2 29 29 H 0.96996 * 119.99805 * 154.95608 * 6 5 4 30 30 H 1.07996 * 119.92099 * 0.02562 * 8 7 6 31 31 H 1.07999 * 120.07627 * 180.27910 * 9 8 7 32 32 H 0.97001 * 119.99553 * 179.97438 * 14 13 11 33 33 H 1.07999 * 120.07737 * 179.97438 * 19 10 9 34 34 H 1.08006 * 119.91795 * 180.02562 * 20 19 10 35 35 H 1.08006 * 120.40539 * 179.97438 * 21 5 4 36 36 H 1.09000 * 109.46980 * 90.00614 * 23 22 21 37 37 H 1.09005 * 109.47300 * 210.00075 * 23 22 21 38 38 H 1.08999 * 109.46910 * 330.00460 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4297 1.2729 0.0005 5 6 4.0482 2.5204 0.0011 6 7 5.4359 2.6288 -0.0042 7 6 6.2152 1.5952 0.4995 8 6 5.7372 0.8153 1.5538 9 6 6.4945 -0.2040 2.0498 10 6 7.7672 -0.4619 1.5032 11 6 8.5594 -1.5112 2.0158 12 1 9.6361 -1.4559 1.9516 13 6 7.9504 -2.6227 2.6070 14 7 6.6621 -2.8120 2.4723 15 14 8.9752 -3.8373 3.5887 16 1 9.6205 -3.1344 4.7267 17 1 8.0993 -4.9189 4.1070 18 1 10.0206 -4.4246 2.7127 19 6 8.2454 0.3329 0.4426 20 6 7.4750 1.3453 -0.0470 21 6 3.2410 3.6602 0.0016 22 6 1.8712 3.5135 0.0010 23 6 0.9928 4.7380 0.0010 24 7 1.3172 2.3146 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0200 0.3685 0.0005 29 1 5.8588 3.4261 -0.3595 30 1 4.7633 1.0170 1.9747 31 1 6.1216 -0.8095 2.8626 32 1 6.2398 -3.5832 2.8820 33 1 9.2202 0.1410 0.0191 34 1 7.8400 1.9551 -0.8603 35 1 3.6853 4.6447 0.0024 36 1 0.7813 5.0334 -1.0267 37 1 0.0576 4.5143 0.5144 38 1 1.5040 5.5519 0.5152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210780646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:55 Heat of formation + Delta-G solvation = 16.942957 kcal Electronic energy + Delta-G solvation = -21306.680111 eV Core-core repulsion = 18113.911950 eV Total energy + Delta-G solvation = -3192.768161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.37089 -38.46027 -37.50486 -35.52424 -33.34865 -31.87565 -30.55918 -29.69443 -28.61715 -27.83037 -26.36424 -24.76695 -22.66165 -21.74272 -21.09986 -20.08914 -17.82338 -17.39626 -17.16557 -15.83400 -15.68934 -15.50997 -15.10696 -15.06739 -14.04193 -13.97356 -13.80533 -13.35343 -13.10091 -12.83178 -12.43592 -12.31692 -12.08796 -11.98164 -11.83094 -11.67468 -11.42856 -11.13278 -11.00710 -10.88975 -10.58315 -10.31329 -9.88185 -9.54574 -9.28852 -9.26382 -8.19674 -8.08873 -7.64720 -6.81275 -6.69058 -4.32458 1.56670 1.75438 2.75573 2.96936 3.05827 3.08010 3.16844 3.35738 3.91063 4.00185 4.15001 4.50046 4.60911 5.17819 5.41308 5.44285 5.47164 5.54466 5.60199 5.61404 5.65958 5.77312 5.85384 6.04103 6.10016 6.18330 6.29120 6.51144 6.62082 6.81668 6.93366 7.00218 7.17409 7.35257 7.50912 7.63473 7.68367 7.96224 8.05763 8.23667 8.31628 8.33778 8.56634 8.83685 8.90740 10.18042 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.004243 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.990547 B = 6597.276061 C = 7649.290111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.306 6.306 3 C 0.347 3.653 4 C -0.251 4.251 5 C 0.279 3.721 6 N -0.656 5.656 7 C 0.013 3.987 8 C -0.116 4.116 9 C -0.140 4.140 10 C 0.101 3.899 11 C -0.459 4.459 12 H 0.077 0.923 13 C 0.073 3.927 14 N -0.796 5.796 15 Si 0.911 3.089 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.266 1.266 19 C -0.206 4.206 20 C -0.112 4.112 21 C -0.279 4.279 22 C 0.186 3.814 23 C -0.098 4.098 24 N -0.582 5.582 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.147 0.853 29 H 0.400 0.600 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.282 0.718 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.439 8.601 -3.178 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.213 6.213 3 C 0.170 3.830 4 C -0.277 4.277 5 C 0.166 3.834 6 N -0.275 5.275 7 C -0.081 4.081 8 C -0.137 4.137 9 C -0.160 4.160 10 C 0.098 3.902 11 C -0.488 4.488 12 H 0.095 0.905 13 C -0.145 4.145 14 N -0.422 5.422 15 Si 0.736 3.264 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.190 1.190 19 C -0.226 4.226 20 C -0.133 4.133 21 C -0.305 4.305 22 C 0.050 3.950 23 C -0.156 4.156 24 N -0.311 5.311 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.109 0.891 28 H 0.165 0.835 29 H 0.235 0.765 30 H 0.112 0.888 31 H 0.141 0.859 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.146 0.854 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.347 7.921 -3.049 12.626 hybrid contribution 1.255 -0.227 0.233 1.296 sum -8.093 7.693 -2.815 11.516 Atomic orbital electron populations 1.22748 0.78066 1.02322 1.01992 1.86281 1.22195 1.24920 1.87929 1.19373 0.88662 0.84146 0.90782 1.20736 0.92010 0.98909 1.16032 1.17656 0.84371 0.92324 0.89052 1.41585 1.01327 1.19895 1.64733 1.17186 0.93560 0.96684 1.00651 1.20390 0.99276 0.97913 0.96110 1.21014 0.96097 0.97215 1.01627 1.17650 0.92121 0.91100 0.89313 1.19496 0.94694 1.01584 1.33056 0.90465 1.25906 0.95156 0.98752 0.94661 1.69817 1.10863 1.26883 1.34592 0.86320 0.80266 0.79425 0.80426 1.18876 1.20303 1.19038 1.20610 1.00579 1.00734 1.00691 1.20048 0.94623 0.99151 0.99431 1.21237 0.93846 0.97946 1.17433 1.20413 0.91063 0.91697 0.91777 1.20655 0.99039 0.93236 1.02648 1.67064 1.40576 0.98059 1.25403 0.92643 0.92734 0.89149 0.83514 0.76526 0.88816 0.85868 0.90733 0.88544 0.89110 0.85413 0.90720 0.90848 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.38 101.05 1.05 1.62 16 2 O -0.31 -5.42 10.47 -18.76 -0.20 -5.62 16 3 C 0.35 6.41 7.48 -17.18 -0.13 6.28 16 4 C -0.25 -4.91 7.86 -39.07 -0.31 -5.22 16 5 C 0.28 4.93 6.08 -83.61 -0.51 4.43 16 6 N -0.66 -11.59 5.42 -8.16 -0.04 -11.64 16 7 C 0.01 0.27 5.96 -83.66 -0.50 -0.23 16 8 C -0.12 -2.71 7.68 -39.77 -0.31 -3.01 16 9 C -0.14 -3.57 8.61 -39.27 -0.34 -3.90 16 10 C 0.10 2.62 5.56 -106.79 -0.59 2.02 16 11 C -0.46 -11.89 9.04 -37.89 -0.34 -12.23 16 12 H 0.08 1.91 7.87 -52.49 -0.41 1.50 16 13 C 0.07 1.80 5.22 -17.34 -0.09 1.70 16 14 N -0.80 -20.43 10.85 55.54 0.60 -19.83 16 15 Si 0.91 18.47 29.58 -169.99 -5.03 13.45 16 16 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 19 C -0.21 -4.85 9.74 -39.27 -0.38 -5.24 16 20 C -0.11 -2.39 9.89 -39.77 -0.39 -2.78 16 21 C -0.28 -4.18 9.66 -39.22 -0.38 -4.56 16 22 C 0.19 2.75 6.77 -82.66 -0.56 2.19 16 23 C -0.10 -1.01 10.16 36.01 0.37 -0.65 16 24 N -0.58 -9.75 9.12 -9.64 -0.09 -9.84 16 25 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.15 3.23 6.40 -52.49 -0.34 2.89 16 29 H 0.40 5.86 8.89 -40.82 -0.36 5.50 16 30 H 0.09 2.13 6.56 -52.49 -0.34 1.79 16 31 H 0.12 3.28 6.18 -52.49 -0.32 2.96 16 32 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 33 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -28.28 323.94 -8.00 -36.27 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.71 Total: 11.89 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -3.41 Total: -19.57 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.47 Total: -41.30 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.20 Total: -5.62 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.28 -8.00 -36.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210780646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.217 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds