Wall clock time and date at job start Tue Mar 31 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35685 * 117.00358 * 2 1 4 4 C 1.38616 * 119.64728 * 179.97438 * 3 2 1 5 5 C 1.39245 * 119.01348 * 180.02562 * 4 3 2 6 6 N 1.39202 * 120.83505 * 180.27770 * 5 4 3 7 7 C 1.38891 * 120.00117 * 334.95427 * 6 5 4 8 8 C 1.39587 * 119.84060 * 327.92544 * 7 6 5 9 9 C 1.36326 * 120.15576 * 179.75501 * 8 7 6 10 10 C 1.40895 * 119.83813 * 0.54270 * 9 8 7 11 11 C 1.41116 * 120.15139 * 179.69676 * 10 9 8 12 12 H 1.08002 * 119.99547 * 207.69617 * 11 10 9 13 13 C 1.39852 * 120.00594 * 27.69274 * 11 10 9 14 14 N 1.30914 * 119.99725 * 12.44612 * 13 11 10 15 15 Si 1.86792 * 120.00375 * 192.44092 * 13 11 10 16 16 H 1.48511 * 109.46980 * 60.00444 * 15 13 11 17 17 H 1.48507 * 109.47470 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47277 * 300.00461 * 15 13 11 19 19 C 1.40900 * 119.68880 * 359.71051 * 10 9 8 20 20 C 1.36316 * 119.83768 * 0.02562 * 19 10 9 21 21 C 1.39665 * 118.32553 * 0.02562 * 5 4 3 22 22 C 1.37762 * 119.19214 * 359.97438 * 21 5 4 23 23 C 1.50700 * 119.54319 * 180.02562 * 22 21 5 24 24 N 1.32079 * 120.91473 * 0.02562 * 22 21 5 25 25 H 1.09004 * 109.47067 * 299.99460 * 1 2 3 26 26 H 1.09000 * 109.47413 * 59.99940 * 1 2 3 27 27 H 1.09003 * 109.47179 * 179.97438 * 1 2 3 28 28 H 1.07994 * 120.49303 * 0.02791 * 4 3 2 29 29 H 0.96996 * 119.99805 * 154.95608 * 6 5 4 30 30 H 1.07996 * 119.92099 * 0.02562 * 8 7 6 31 31 H 1.07999 * 120.07627 * 180.27910 * 9 8 7 32 32 H 0.97001 * 119.99553 * 179.97438 * 14 13 11 33 33 H 1.07999 * 120.07737 * 179.97438 * 19 10 9 34 34 H 1.08006 * 119.91795 * 180.02562 * 20 19 10 35 35 H 1.08006 * 120.40539 * 179.97438 * 21 5 4 36 36 H 1.09000 * 109.46980 * 90.00614 * 23 22 21 37 37 H 1.09005 * 109.47300 * 210.00075 * 23 22 21 38 38 H 1.08999 * 109.46910 * 330.00460 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4297 1.2729 0.0005 5 6 4.0482 2.5204 0.0011 6 7 5.4359 2.6288 -0.0042 7 6 6.2152 1.5952 0.4995 8 6 5.7372 0.8153 1.5538 9 6 6.4945 -0.2040 2.0498 10 6 7.7672 -0.4619 1.5032 11 6 8.5594 -1.5112 2.0158 12 1 9.6361 -1.4559 1.9516 13 6 7.9504 -2.6227 2.6070 14 7 6.6621 -2.8120 2.4723 15 14 8.9752 -3.8373 3.5887 16 1 9.6205 -3.1344 4.7267 17 1 8.0993 -4.9189 4.1070 18 1 10.0206 -4.4246 2.7127 19 6 8.2454 0.3329 0.4426 20 6 7.4750 1.3453 -0.0470 21 6 3.2410 3.6602 0.0016 22 6 1.8712 3.5135 0.0010 23 6 0.9928 4.7380 0.0010 24 7 1.3172 2.3146 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0200 0.3685 0.0005 29 1 5.8588 3.4261 -0.3595 30 1 4.7633 1.0170 1.9747 31 1 6.1216 -0.8095 2.8626 32 1 6.2398 -3.5832 2.8820 33 1 9.2202 0.1410 0.0191 34 1 7.8400 1.9551 -0.8603 35 1 3.6853 4.6447 0.0024 36 1 0.7813 5.0334 -1.0267 37 1 0.0576 4.5143 0.5144 38 1 1.5040 5.5519 0.5152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210780646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:55 Heat of formation + Delta-G solvation = -0.338247 kcal Electronic energy + Delta-G solvation = -21307.429480 eV Core-core repulsion = 18113.911950 eV Total energy + Delta-G solvation = -3193.517530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71104 -40.06007 -38.92481 -37.09667 -35.11003 -33.08393 -32.08442 -31.51820 -30.22648 -29.00997 -27.52710 -26.51099 -24.04022 -23.24425 -22.86028 -21.67534 -19.28870 -19.12845 -18.64745 -17.30272 -17.10464 -16.94042 -16.59364 -16.53848 -15.70948 -15.34172 -14.96191 -14.88756 -14.53181 -14.31013 -14.00392 -13.74772 -13.52865 -13.33886 -13.12618 -12.99751 -12.78222 -12.67093 -12.56777 -12.39406 -12.18301 -11.74519 -11.63539 -11.33442 -11.04386 -10.61169 -9.84385 -9.50938 -9.36792 -8.62138 -8.39932 -6.23976 0.25851 0.35140 1.02453 1.11214 1.38819 1.50422 1.53737 2.09773 2.21878 2.57970 2.72987 2.88825 3.36082 3.71127 4.04986 4.21078 4.28047 4.34854 4.40835 4.44536 4.45307 4.55594 4.67309 4.76597 4.88288 4.94348 4.99168 5.08627 5.10844 5.18258 5.21545 5.33337 5.46668 5.63104 5.69269 5.89023 6.07156 6.23595 6.35339 6.47713 6.68431 6.88364 6.94439 7.02432 7.06270 8.37005 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.004243 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.990547 B = 6597.276061 C = 7649.290111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.331 6.331 3 C 0.337 3.663 4 C -0.280 4.280 5 C 0.269 3.731 6 N -0.651 5.651 7 C 0.035 3.965 8 C -0.122 4.122 9 C -0.162 4.162 10 C 0.068 3.932 11 C -0.496 4.496 12 H 0.079 0.921 13 C 0.030 3.970 14 N -0.834 5.834 15 Si 0.983 3.017 16 H -0.260 1.260 17 H -0.271 1.271 18 H -0.259 1.259 19 C -0.213 4.213 20 C -0.113 4.113 21 C -0.267 4.267 22 C 0.183 3.817 23 C -0.094 4.094 24 N -0.583 5.583 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.419 0.581 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.285 0.715 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.165 0.835 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.139 10.984 -3.928 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.239 6.239 3 C 0.160 3.840 4 C -0.306 4.306 5 C 0.157 3.843 6 N -0.273 5.273 7 C -0.059 4.059 8 C -0.143 4.143 9 C -0.182 4.182 10 C 0.065 3.935 11 C -0.526 4.526 12 H 0.097 0.903 13 C -0.183 4.183 14 N -0.461 5.461 15 Si 0.804 3.196 16 H -0.184 1.184 17 H -0.196 1.196 18 H -0.183 1.183 19 C -0.233 4.233 20 C -0.133 4.133 21 C -0.292 4.292 22 C 0.047 3.953 23 C -0.151 4.151 24 N -0.312 5.312 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.257 0.743 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.147 0.853 35 H 0.183 0.817 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.072 10.346 -3.822 14.937 hybrid contribution 1.250 -0.776 0.351 1.512 sum -8.823 9.571 -3.471 13.472 Atomic orbital electron populations 1.23020 0.75754 1.04258 1.02414 1.86249 1.24653 1.25160 1.87837 1.19474 0.88525 0.84987 0.90978 1.20630 0.92678 0.98567 1.18723 1.17849 0.84405 0.92644 0.89368 1.41395 1.01231 1.19670 1.65019 1.17215 0.93635 0.96181 0.98902 1.20394 0.98942 0.98044 0.96930 1.20897 0.96956 0.98250 1.02075 1.17962 0.92597 0.92263 0.90686 1.19761 0.94913 1.02685 1.35239 0.90285 1.26762 0.96185 1.00271 0.95104 1.69910 1.12545 1.27822 1.35843 0.85229 0.78577 0.76959 0.78801 1.18385 1.19587 1.18278 1.20852 1.01373 1.00948 1.00116 1.20369 0.94212 0.98811 0.99913 1.21600 0.93694 0.98418 1.15513 1.21306 0.91952 0.92395 0.89598 1.20794 0.98490 0.91526 1.04327 1.67213 1.40337 0.98312 1.25297 0.92390 0.91992 0.86594 0.87115 0.74310 0.89116 0.88154 0.90418 0.87385 0.85308 0.81739 0.88722 0.90515 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.01 10.38 113.37 1.18 2.19 16 2 O -0.33 -11.98 10.47 -90.03 -0.94 -12.92 16 3 C 0.34 12.53 7.48 84.70 0.63 13.16 16 4 C -0.28 -11.18 7.86 22.60 0.18 -11.01 16 5 C 0.27 9.17 6.08 38.56 0.23 9.40 16 6 N -0.65 -21.82 5.42 -179.73 -0.97 -22.80 16 7 C 0.04 1.50 5.96 38.67 0.23 1.73 16 8 C -0.12 -5.91 7.68 22.15 0.17 -5.74 16 9 C -0.16 -8.75 8.61 22.47 0.19 -8.55 16 10 C 0.07 3.65 5.56 -21.27 -0.12 3.53 16 11 C -0.50 -26.82 9.04 23.37 0.21 -26.61 16 12 H 0.08 4.06 7.87 -2.91 -0.02 4.03 16 13 C 0.03 1.55 5.22 85.22 0.45 2.00 16 14 N -0.83 -45.17 10.85 21.81 0.24 -44.93 16 15 Si 0.98 38.89 29.58 68.60 2.03 40.92 16 16 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 17 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 19 C -0.21 -10.13 9.74 22.47 0.22 -9.91 16 20 C -0.11 -4.69 9.89 22.15 0.22 -4.47 16 21 C -0.27 -7.13 9.66 22.50 0.22 -6.91 16 22 C 0.18 4.83 6.77 42.41 0.29 5.12 16 23 C -0.09 -1.51 10.16 71.24 0.72 -0.79 16 24 N -0.58 -18.59 9.12 -297.22 -2.71 -21.30 16 25 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 26 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 27 H 0.12 2.26 8.14 -2.39 -0.02 2.25 16 28 H 0.11 5.19 6.40 -2.91 -0.02 5.17 16 29 H 0.42 10.90 8.89 -92.71 -0.82 10.07 16 30 H 0.09 4.34 6.56 -2.91 -0.02 4.32 16 31 H 0.10 5.78 6.18 -2.91 -0.02 5.76 16 32 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 33 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 34 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.10 1.13 8.07 -2.39 -0.02 1.11 16 Total: -1.00 -65.23 323.94 2.92 -62.31 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: 0.26 Total: 35.60 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 5.02 Total: -36.88 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -3.45 Total: -89.03 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.94 Total: -12.92 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -65.23 2.92 -62.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210780646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.971 kcal (2) G-P(sol) polarization free energy of solvation -65.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds