Wall clock time and date at job start Tue Mar 31 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47726 * 2 1 4 4 O 1.42903 * 109.46891 * 239.99756 * 2 1 3 5 5 C 1.50706 * 109.47096 * 120.00172 * 2 1 3 6 6 C 1.38432 * 119.92241 * 329.97674 * 5 2 1 7 7 C 1.38381 * 120.29997 * 180.02562 * 6 5 2 8 8 C 1.37947 * 120.14726 * 359.74021 * 7 6 5 9 9 C 1.39630 * 119.84636 * 0.51170 * 8 7 6 10 10 C 1.47938 * 120.14779 * 179.76559 * 9 8 7 11 11 C 1.40431 * 120.78928 * 359.72425 * 10 9 8 12 12 N 1.31586 * 119.09338 * 180.02562 * 11 10 9 13 13 C 1.33640 * 120.83253 * 0.02562 * 12 11 10 14 14 C 1.41087 * 119.13660 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99960 * 6.28438 * 14 13 12 16 16 C 1.40143 * 120.00403 * 186.27701 * 14 13 12 17 17 N 1.30662 * 119.99822 * 353.60670 * 16 14 13 18 18 Si 1.86800 * 120.00360 * 173.87662 * 16 14 13 19 19 H 1.48506 * 109.47052 * 274.73890 * 18 16 14 20 20 H 1.48502 * 109.47138 * 34.73592 * 18 16 14 21 21 H 1.48494 * 109.47382 * 154.73747 * 18 16 14 22 22 N 1.33647 * 121.73174 * 0.27587 * 13 12 11 23 23 C 1.31589 * 120.83067 * 359.43168 * 22 13 12 24 24 C 1.37895 * 119.92956 * 149.99636 * 5 2 1 25 25 H 1.09000 * 109.47075 * 300.00044 * 1 2 3 26 26 H 1.08999 * 109.46770 * 59.99924 * 1 2 3 27 27 H 1.08993 * 109.47722 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47559 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47020 * 300.00383 * 3 2 1 30 30 H 1.09000 * 109.46879 * 59.99836 * 3 2 1 31 31 H 0.96696 * 113.99934 * 300.00080 * 4 2 1 32 32 H 1.08007 * 119.85291 * 359.97438 * 6 5 2 33 33 H 1.07999 * 119.92964 * 179.97438 * 7 6 5 34 34 H 1.07999 * 120.07867 * 180.27798 * 8 7 6 35 35 H 1.08000 * 120.45153 * 0.04577 * 11 10 9 36 36 H 0.97004 * 119.99688 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.45379 * 180.25478 * 23 22 13 38 38 H 1.07998 * 120.07243 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0323 -0.7105 1.2305 6 6 1.2831 -0.6893 2.3943 7 6 1.7371 -1.3385 3.5289 8 6 2.9384 -2.0163 3.5053 9 6 3.7016 -2.0372 2.3362 10 6 4.9933 -2.7577 2.3050 11 6 5.4730 -3.4232 3.4447 12 7 6.6264 -4.0532 3.3798 13 6 7.3383 -4.0639 2.2489 14 6 8.5707 -4.7501 2.2194 15 1 8.8799 -5.3416 3.0685 16 6 9.3937 -4.6644 1.0883 17 7 8.9670 -4.0540 0.0147 18 14 11.0977 -5.4294 1.1127 19 1 12.0630 -4.4689 1.7053 20 1 11.0713 -6.6708 1.9274 21 1 11.5134 -5.7566 -0.2748 22 7 6.9163 -3.4368 1.1467 23 6 5.7698 -2.7911 1.1353 24 6 3.2374 -1.3798 1.1947 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.7209 -1.5952 -1.2329 32 1 0.3402 -0.1629 2.4173 33 1 1.1480 -1.3178 4.4338 34 1 3.2896 -2.5264 4.3901 35 1 4.9027 -3.4184 4.3619 36 1 9.5368 -3.9943 -0.7681 37 1 5.4327 -2.2898 0.2401 38 1 3.8212 -1.3950 0.2863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240407236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:40 Heat of formation + Delta-G solvation = 8.517293 kcal Electronic energy + Delta-G solvation = -21286.104372 eV Core-core repulsion = 18092.970847 eV Total energy + Delta-G solvation = -3193.133525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.74254 -38.81358 -36.95316 -34.09538 -32.90422 -32.07529 -31.48410 -29.89785 -28.77332 -27.43457 -25.99735 -23.67605 -22.80063 -21.98389 -20.90179 -19.63606 -18.03303 -17.33320 -16.20727 -16.09025 -15.19128 -14.94659 -14.75200 -14.52626 -14.16552 -13.77126 -13.22470 -13.16716 -12.77881 -12.69372 -12.40356 -12.31842 -12.17575 -11.97541 -11.75830 -11.50507 -11.39198 -11.20080 -11.11778 -10.85524 -10.45037 -10.39372 -9.96919 -9.73508 -9.30267 -9.21623 -8.95494 -8.43523 -7.43914 -7.38749 -6.72475 -4.84423 1.47250 1.78135 2.66803 2.90833 2.96103 3.00383 3.05765 3.74888 4.19555 4.24845 4.58903 4.71850 4.90673 5.07316 5.29471 5.36648 5.48079 5.55376 5.67710 5.69554 5.76779 5.77748 5.81384 5.85267 5.95116 6.00159 6.09069 6.20692 6.21610 6.30752 6.49527 6.71847 6.81696 6.87452 6.91100 7.02441 7.39264 7.42561 7.56393 7.71572 7.98385 8.31604 8.39343 8.96166 9.92730 10.11786 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.026785 B = 0.003823 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.120661 B = 7321.455434 C = 8172.203804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.170 3.830 3 C -0.133 4.133 4 O -0.556 6.556 5 C -0.109 4.109 6 C -0.155 4.155 7 C -0.109 4.109 8 C -0.147 4.147 9 C 0.039 3.961 10 C -0.332 4.332 11 C 0.188 3.812 12 N -0.593 5.593 13 C 0.379 3.621 14 C -0.376 4.376 15 H 0.097 0.903 16 C 0.060 3.940 17 N -0.695 5.695 18 Si 0.923 3.077 19 H -0.265 1.265 20 H -0.258 1.258 21 H -0.273 1.273 22 N -0.508 5.508 23 C 0.183 3.817 24 C -0.128 4.128 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.377 0.623 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.280 0.720 37 H 0.132 0.868 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 6.219 -0.314 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.129 3.871 3 C -0.191 4.191 4 O -0.362 6.362 5 C -0.109 4.109 6 C -0.173 4.173 7 C -0.127 4.127 8 C -0.165 4.165 9 C 0.037 3.963 10 C -0.342 4.342 11 C 0.013 3.987 12 N -0.311 5.311 13 C 0.146 3.854 14 C -0.409 4.409 15 H 0.115 0.885 16 C -0.169 4.169 17 N -0.315 5.315 18 Si 0.746 3.254 19 H -0.189 1.189 20 H -0.181 1.181 21 H -0.198 1.198 22 N -0.224 5.224 23 C 0.006 3.994 24 C -0.146 4.146 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.225 0.775 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.363 6.266 -0.707 12.131 hybrid contribution -0.539 -0.298 0.206 0.649 sum -10.902 5.968 -0.501 12.439 Atomic orbital electron populations 1.22519 0.95646 1.02553 1.02469 1.19947 0.92081 0.92394 0.82668 1.21727 1.02442 0.92940 1.01946 1.86532 1.77401 1.29092 1.43160 1.20263 0.95708 0.99419 0.95526 1.20822 1.00136 1.03228 0.93114 1.20900 0.96241 0.97940 0.97657 1.21170 0.95390 1.01880 0.98068 1.18721 0.92377 0.92867 0.92360 1.19755 0.99588 1.15803 0.99065 1.22688 0.91324 0.89202 0.95525 1.68653 1.08233 1.25006 1.29251 1.19969 0.92785 0.89753 0.82845 1.19512 0.98351 1.22207 1.00783 0.88503 1.26241 1.01138 0.94876 0.94635 1.70120 1.35276 1.24755 1.01337 0.86072 0.80267 0.80341 0.78717 1.18933 1.18145 1.19792 1.69355 1.12901 1.11881 1.28271 1.23087 0.89902 0.91466 0.94956 1.20989 0.95816 0.99246 0.98560 0.91342 0.91920 0.92171 0.91589 0.91986 0.91256 0.77498 0.86905 0.86912 0.86522 0.85091 0.90846 0.85043 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 8.12 37.16 0.30 -1.40 16 2 C 0.17 2.08 1.23 -91.77 -0.11 1.97 16 3 C -0.13 -1.56 8.83 37.16 0.33 -1.23 16 4 O -0.56 -7.32 11.96 -35.23 -0.42 -7.74 16 5 C -0.11 -1.56 4.80 -104.67 -0.50 -2.07 16 6 C -0.15 -2.07 9.14 -39.46 -0.36 -2.43 16 7 C -0.11 -1.53 10.03 -39.64 -0.40 -1.93 16 8 C -0.15 -2.40 9.45 -39.17 -0.37 -2.77 16 9 C 0.04 0.72 5.88 -104.87 -0.62 0.11 16 10 C -0.33 -7.33 5.94 -104.27 -0.62 -7.95 16 11 C 0.19 4.28 10.70 -16.83 -0.18 4.10 16 12 N -0.59 -15.52 10.34 -12.41 -0.13 -15.65 16 13 C 0.38 10.51 7.35 -158.17 -1.16 9.35 16 14 C -0.38 -9.99 9.35 -37.79 -0.35 -10.34 16 15 H 0.10 2.45 7.86 -52.49 -0.41 2.04 16 16 C 0.06 1.46 5.49 -17.33 -0.10 1.37 16 17 N -0.69 -17.67 11.43 55.56 0.64 -17.04 16 18 Si 0.92 17.75 29.56 -169.99 -5.03 12.72 16 19 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 22 N -0.51 -13.85 7.86 -12.41 -0.10 -13.95 16 23 C 0.18 4.37 10.70 -16.83 -0.18 4.19 16 24 C -0.13 -2.17 8.75 -39.17 -0.34 -2.52 16 25 H 0.07 0.60 6.50 -51.93 -0.34 0.26 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.38 3.98 9.04 45.56 0.41 4.40 16 32 H 0.11 1.23 6.15 -52.48 -0.32 0.91 16 33 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.78 6.29 -52.49 -0.33 1.45 16 35 H 0.13 2.52 6.33 -52.49 -0.33 2.19 16 36 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 37 H 0.13 2.82 6.33 -52.49 -0.33 2.49 16 38 H 0.12 2.17 5.71 -52.49 -0.30 1.87 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -29.91 319.49 -8.51 -38.43 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -3.63 Total: 9.96 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -4.66 Total: -11.55 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.41 Total: -46.63 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.42 Total: -7.74 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.91 -8.51 -38.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.944 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds