Wall clock time and date at job start Tue Mar 31 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47726 * 2 1 4 4 O 1.42903 * 109.46891 * 239.99756 * 2 1 3 5 5 C 1.50706 * 109.47096 * 120.00172 * 2 1 3 6 6 C 1.38432 * 119.92241 * 329.97674 * 5 2 1 7 7 C 1.38381 * 120.29997 * 180.02562 * 6 5 2 8 8 C 1.37947 * 120.14726 * 359.74021 * 7 6 5 9 9 C 1.39630 * 119.84636 * 0.51170 * 8 7 6 10 10 C 1.47938 * 120.14779 * 179.76559 * 9 8 7 11 11 C 1.40431 * 120.78928 * 359.72425 * 10 9 8 12 12 N 1.31586 * 119.09338 * 180.02562 * 11 10 9 13 13 C 1.33640 * 120.83253 * 0.02562 * 12 11 10 14 14 C 1.41087 * 119.13660 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99960 * 6.28438 * 14 13 12 16 16 C 1.40143 * 120.00403 * 186.27701 * 14 13 12 17 17 N 1.30662 * 119.99822 * 353.60670 * 16 14 13 18 18 Si 1.86800 * 120.00360 * 173.87662 * 16 14 13 19 19 H 1.48506 * 109.47052 * 274.73890 * 18 16 14 20 20 H 1.48502 * 109.47138 * 34.73592 * 18 16 14 21 21 H 1.48494 * 109.47382 * 154.73747 * 18 16 14 22 22 N 1.33647 * 121.73174 * 0.27587 * 13 12 11 23 23 C 1.31589 * 120.83067 * 359.43168 * 22 13 12 24 24 C 1.37895 * 119.92956 * 149.99636 * 5 2 1 25 25 H 1.09000 * 109.47075 * 300.00044 * 1 2 3 26 26 H 1.08999 * 109.46770 * 59.99924 * 1 2 3 27 27 H 1.08993 * 109.47722 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47559 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47020 * 300.00383 * 3 2 1 30 30 H 1.09000 * 109.46879 * 59.99836 * 3 2 1 31 31 H 0.96696 * 113.99934 * 300.00080 * 4 2 1 32 32 H 1.08007 * 119.85291 * 359.97438 * 6 5 2 33 33 H 1.07999 * 119.92964 * 179.97438 * 7 6 5 34 34 H 1.07999 * 120.07867 * 180.27798 * 8 7 6 35 35 H 1.08000 * 120.45153 * 0.04577 * 11 10 9 36 36 H 0.97004 * 119.99688 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.45379 * 180.25478 * 23 22 13 38 38 H 1.07998 * 120.07243 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0323 -0.7105 1.2305 6 6 1.2831 -0.6893 2.3943 7 6 1.7371 -1.3385 3.5289 8 6 2.9384 -2.0163 3.5053 9 6 3.7016 -2.0372 2.3362 10 6 4.9933 -2.7577 2.3050 11 6 5.4730 -3.4232 3.4447 12 7 6.6264 -4.0532 3.3798 13 6 7.3383 -4.0639 2.2489 14 6 8.5707 -4.7501 2.2194 15 1 8.8799 -5.3416 3.0685 16 6 9.3937 -4.6644 1.0883 17 7 8.9670 -4.0540 0.0147 18 14 11.0977 -5.4294 1.1127 19 1 12.0630 -4.4689 1.7053 20 1 11.0713 -6.6708 1.9274 21 1 11.5134 -5.7566 -0.2748 22 7 6.9163 -3.4368 1.1467 23 6 5.7698 -2.7911 1.1353 24 6 3.2374 -1.3798 1.1947 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.7209 -1.5952 -1.2329 32 1 0.3402 -0.1629 2.4173 33 1 1.1480 -1.3178 4.4338 34 1 3.2896 -2.5264 4.3901 35 1 4.9027 -3.4184 4.3619 36 1 9.5368 -3.9943 -0.7681 37 1 5.4327 -2.2898 0.2401 38 1 3.8212 -1.3950 0.2863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240407236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:40 Heat of formation + Delta-G solvation = -10.242899 kcal Electronic energy + Delta-G solvation = -21286.917875 eV Core-core repulsion = 18092.970847 eV Total energy + Delta-G solvation = -3193.947028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18180 -40.36296 -38.11120 -35.86297 -34.19048 -33.88937 -32.90637 -31.19177 -30.27684 -28.38573 -27.61625 -25.24845 -24.40345 -23.38784 -22.33234 -20.83493 -19.85434 -18.55026 -17.86151 -17.49382 -16.81937 -16.25391 -16.00223 -15.76790 -15.43767 -15.08120 -14.97644 -14.56731 -14.39762 -14.03912 -13.71723 -13.32281 -13.22872 -13.12244 -13.03467 -12.92784 -12.77457 -12.65111 -12.40443 -12.20711 -11.96024 -11.55102 -11.41515 -11.23971 -11.17264 -10.84029 -10.54984 -9.63809 -9.34750 -8.98921 -8.53888 -6.76179 -0.00609 0.55241 0.97437 1.12767 1.37924 1.53409 1.54645 2.15895 2.63209 3.05432 3.33237 3.68357 3.83956 3.86413 3.91982 3.96515 4.14126 4.21269 4.23738 4.32933 4.40683 4.59008 4.67840 4.76992 4.78524 4.88895 4.94702 5.00220 5.05884 5.20276 5.22346 5.25726 5.32658 5.34135 5.60319 5.68057 5.80407 5.92301 6.05826 6.21745 6.42182 6.50765 6.82291 7.08081 8.11202 8.25883 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.026785 B = 0.003823 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.120661 B = 7321.455434 C = 8172.203804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.165 3.835 3 C -0.136 4.136 4 O -0.574 6.574 5 C -0.109 4.109 6 C -0.135 4.135 7 C -0.107 4.107 8 C -0.148 4.148 9 C 0.001 3.999 10 C -0.314 4.314 11 C 0.172 3.828 12 N -0.617 5.617 13 C 0.350 3.650 14 C -0.419 4.419 15 H 0.095 0.905 16 C 0.020 3.980 17 N -0.737 5.737 18 Si 1.004 2.996 19 H -0.259 1.259 20 H -0.253 1.253 21 H -0.260 1.260 22 N -0.540 5.540 23 C 0.161 3.839 24 C -0.134 4.134 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.386 0.614 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.125 0.875 35 H 0.167 0.833 36 H 0.288 0.712 37 H 0.145 0.855 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.371 7.430 0.425 16.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.125 3.875 3 C -0.193 4.193 4 O -0.381 6.381 5 C -0.110 4.110 6 C -0.153 4.153 7 C -0.125 4.125 8 C -0.166 4.166 9 C -0.001 4.001 10 C -0.324 4.324 11 C -0.001 4.001 12 N -0.337 5.337 13 C 0.116 3.884 14 C -0.453 4.453 15 H 0.113 0.887 16 C -0.205 4.205 17 N -0.358 5.358 18 Si 0.822 3.178 19 H -0.184 1.184 20 H -0.176 1.176 21 H -0.184 1.184 22 N -0.256 5.256 23 C -0.014 4.014 24 C -0.153 4.153 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.235 0.765 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.143 0.857 35 H 0.183 0.817 36 H 0.099 0.901 37 H 0.162 0.838 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.033 7.509 0.036 15.041 hybrid contribution -0.122 -0.473 0.010 0.488 sum -13.154 7.036 0.046 14.918 Atomic orbital electron populations 1.22471 0.93008 1.03252 1.03832 1.20140 0.93970 0.92093 0.81303 1.21782 1.01028 0.93022 1.03441 1.86517 1.78022 1.29954 1.43646 1.20556 0.94598 0.98628 0.97175 1.21317 1.00721 1.01271 0.91947 1.21316 0.95300 0.96522 0.99314 1.21370 0.96059 1.01906 0.97272 1.18667 0.91858 0.95117 0.94413 1.20070 1.00468 1.14033 0.97786 1.23277 0.90866 0.88773 0.97148 1.68664 1.09619 1.26360 1.29024 1.20385 0.93777 0.90697 0.83498 1.19807 0.99331 1.23978 1.02149 0.88683 1.27208 1.05044 0.94793 0.93412 1.70185 1.37219 1.26179 1.02185 0.84898 0.74319 0.79294 0.79259 1.18386 1.17638 1.18394 1.69306 1.14429 1.13184 1.28727 1.23438 0.89794 0.91725 0.96451 1.20968 0.96955 0.99787 0.97551 0.89575 0.91029 0.91793 0.93903 0.90842 0.89475 0.76503 0.83161 0.83268 0.85729 0.81658 0.90051 0.83773 0.87309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 8.12 71.98 0.58 -1.98 16 2 C 0.17 3.62 1.23 -11.54 -0.01 3.61 16 3 C -0.14 -2.85 8.83 71.98 0.64 -2.21 16 4 O -0.57 -14.46 11.96 -148.98 -1.78 -16.24 16 5 C -0.11 -2.85 4.80 -19.90 -0.10 -2.94 16 6 C -0.13 -2.96 9.14 22.35 0.20 -2.76 16 7 C -0.11 -2.51 10.03 22.23 0.22 -2.29 16 8 C -0.15 -4.48 9.45 22.54 0.21 -4.27 16 9 C 0.00 0.04 5.88 -20.03 -0.12 -0.08 16 10 C -0.31 -14.24 5.94 -19.64 -0.12 -14.36 16 11 C 0.17 8.04 10.70 85.26 0.91 8.95 16 12 N -0.62 -33.71 10.34 -193.17 -2.00 -35.71 16 13 C 0.35 20.56 7.35 134.91 0.99 21.55 16 14 C -0.42 -23.51 9.35 23.43 0.22 -23.30 16 15 H 0.10 5.10 7.86 -2.91 -0.02 5.08 16 16 C 0.02 1.02 5.49 85.33 0.47 1.49 16 17 N -0.74 -39.23 11.43 21.86 0.25 -38.98 16 18 Si 1.00 37.31 29.56 68.60 2.03 39.34 16 19 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 20 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 21 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 22 N -0.54 -31.14 7.86 -193.17 -1.52 -32.66 16 23 C 0.16 8.09 10.70 85.26 0.91 9.00 16 24 C -0.13 -4.49 8.75 22.53 0.20 -4.30 16 25 H 0.09 1.01 6.50 -2.39 -0.02 1.00 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.39 7.82 9.04 -74.06 -0.67 7.15 16 32 H 0.15 2.26 6.15 -2.91 -0.02 2.25 16 33 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.12 3.50 6.29 -2.91 -0.02 3.49 16 35 H 0.17 6.28 6.33 -2.91 -0.02 6.27 16 36 H 0.29 13.61 8.29 -92.71 -0.77 12.84 16 37 H 0.15 6.59 6.33 -2.91 -0.02 6.57 16 38 H 0.11 3.92 5.71 -2.91 -0.02 3.90 16 Total: -1.00 -69.23 319.49 2.63 -66.60 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.43 Total: 31.53 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 5.22 Total: -13.89 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.26 Total: -107.34 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -1.78 Total: -16.24 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -69.23 2.63 -66.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.356 kcal (2) G-P(sol) polarization free energy of solvation -69.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds