Wall clock time and date at job start Tue Mar 31 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38665 * 120.42296 * 2 1 4 4 C 1.38629 * 118.42252 * 180.24794 * 3 2 1 5 5 C 1.38222 * 119.16071 * 359.75082 * 4 3 2 6 6 N 1.31852 * 120.76562 * 0.02562 * 5 4 3 7 7 C 1.31887 * 121.72491 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.61950 * 179.97438 * 7 6 5 9 9 N 1.46495 * 109.46732 * 90.00381 * 8 7 6 10 10 C 1.39785 * 119.99884 * 180.02562 * 9 8 7 11 11 C 1.38950 * 120.00811 * 179.97438 * 10 9 8 12 12 C 1.38013 * 119.99674 * 180.02562 * 11 10 9 13 13 C 1.38901 * 120.00276 * 0.02562 * 12 11 10 14 14 O 1.35792 * 119.99457 * 179.97438 * 13 12 11 15 15 C 1.34816 * 117.00137 * 354.45290 * 14 13 12 16 16 H 1.08010 * 119.99647 * 5.06210 * 15 14 13 17 17 C 1.38620 * 120.00540 * 185.05841 * 15 14 13 18 18 N 1.31582 * 119.99901 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00232 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47143 * 89.99606 * 19 17 15 21 21 H 1.48500 * 109.46995 * 210.00150 * 19 17 15 22 22 H 1.48507 * 109.47006 * 330.00110 * 19 17 15 23 23 C 1.38894 * 120.01424 * 0.26869 * 13 12 11 24 24 C 1.38013 * 120.00372 * 359.45418 * 23 13 12 25 25 H 1.09010 * 109.46793 * 270.25099 * 1 2 3 26 26 H 1.09001 * 109.47235 * 30.24534 * 1 2 3 27 27 H 1.08999 * 109.47639 * 150.24978 * 1 2 3 28 28 H 1.08004 * 120.78685 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.41945 * 179.72631 * 4 3 2 30 30 H 1.08003 * 119.61560 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46765 * 330.00722 * 8 7 6 32 32 H 1.08991 * 109.47341 * 210.00364 * 8 7 6 33 33 H 0.97000 * 120.00771 * 359.97438 * 9 8 7 34 34 H 1.08004 * 120.00160 * 0.02562 * 11 10 9 35 35 H 1.07989 * 119.99834 * 179.97438 * 12 11 10 36 36 H 0.97001 * 119.99978 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.99781 * 179.71132 * 23 13 12 38 38 H 1.08009 * 120.00306 * 180.27600 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1957 0.0000 4 6 3.5945 1.1473 -0.0053 5 6 4.2255 -0.0825 -0.0051 6 7 3.5254 -1.1997 -0.0005 7 6 2.2065 -1.1917 0.0046 8 6 1.4538 -2.4972 0.0092 9 7 1.2152 -2.9184 1.3919 10 6 0.5301 -4.1089 1.6515 11 6 0.3041 -4.5088 2.9629 12 6 -0.3718 -5.6845 3.2190 13 6 -0.8257 -6.4682 2.1659 14 8 -1.4903 -7.6253 2.4180 15 6 -1.5758 -8.0138 3.7062 16 1 -1.1988 -7.3729 4.4896 17 6 -2.1476 -9.2356 4.0252 18 7 -2.6064 -10.0165 3.0707 19 14 -2.2667 -9.7735 5.8101 20 1 -3.5526 -9.3025 6.3843 21 1 -2.2038 -11.2552 5.8858 22 1 -1.1381 -9.1902 6.5792 23 6 -0.5946 -6.0718 0.8549 24 6 0.0762 -4.8933 0.5983 25 1 -0.3633 0.0045 1.0278 26 1 -0.3634 0.8878 -0.5176 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6890 2.1423 0.0004 29 1 4.1735 2.0590 -0.0099 30 1 5.3045 -0.1287 -0.0087 31 1 2.0414 -3.2572 -0.5059 32 1 0.4994 -2.3681 -0.5011 33 1 1.5331 -2.3716 2.1273 34 1 0.6574 -3.8996 3.7818 35 1 -0.5471 -5.9955 4.2381 36 1 -3.0062 -10.8716 3.2940 37 1 -0.9436 -6.6838 0.0363 38 1 0.2520 -4.5829 -0.4212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320291225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:13 Heat of formation + Delta-G solvation = 39.374663 kcal Electronic energy + Delta-G solvation = -20611.203589 eV Core-core repulsion = 17419.408139 eV Total energy + Delta-G solvation = -3191.795449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.66976 -38.94949 -37.05997 -34.83150 -33.79779 -32.35452 -31.78262 -30.17226 -28.34419 -27.30060 -25.96741 -24.76155 -22.93848 -22.26172 -21.45476 -20.60717 -17.83959 -17.24172 -17.01497 -16.85592 -16.05093 -15.42210 -14.94655 -14.46101 -14.28126 -13.97399 -13.77250 -13.49097 -13.41828 -13.26579 -12.97020 -12.94255 -12.67594 -12.54305 -12.37595 -11.63304 -11.53020 -11.32182 -11.24800 -10.90726 -10.55015 -10.33742 -10.03373 -9.67179 -9.22467 -9.14019 -9.12262 -8.41585 -8.13333 -6.37268 -6.29409 -3.86654 0.74974 0.97616 2.24035 2.60752 3.20423 3.21458 3.25950 3.36742 3.94040 4.08184 4.17296 4.40803 4.50180 4.61992 4.70908 4.72825 5.07754 5.22569 5.28018 5.29868 5.39196 5.45728 5.48600 5.64905 5.69367 5.79538 5.82907 5.89903 6.00427 6.24122 6.27139 6.41484 6.57203 6.89346 6.93350 7.16870 7.35016 7.48095 7.66831 7.74315 7.98634 8.14993 8.24856 9.16521 9.91350 10.89305 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.041241 B = 0.002767 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.772545 B =10117.029678 C =10239.485252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.118 4.118 3 C -0.082 4.082 4 C -0.168 4.168 5 C 0.090 3.910 6 N -0.466 5.466 7 C 0.114 3.886 8 C 0.183 3.817 9 N -0.751 5.751 10 C 0.126 3.874 11 C -0.140 4.140 12 C -0.189 4.189 13 C 0.114 3.886 14 O -0.189 6.189 15 C -0.386 4.386 16 H 0.088 0.912 17 C 0.036 3.964 18 N -0.870 5.870 19 Si 0.937 3.063 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.150 4.150 24 C -0.145 4.145 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.156 0.844 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.390 0.610 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.267 0.733 37 H 0.117 0.883 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.047 22.016 -5.624 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.120 4.120 3 C -0.108 4.108 4 C -0.188 4.188 5 C -0.068 4.068 6 N -0.174 5.174 7 C -0.024 4.024 8 C 0.058 3.942 9 N -0.387 5.387 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.209 4.209 13 C 0.061 3.939 14 O -0.094 6.094 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.167 4.167 18 N -0.506 5.506 19 Si 0.763 3.237 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.169 4.169 24 C -0.168 4.168 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.173 0.827 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.223 0.777 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.252 20.790 -5.993 23.532 hybrid contribution -0.157 0.944 1.248 1.572 sum 9.096 21.734 -4.746 24.034 Atomic orbital electron populations 1.20861 0.89835 1.03361 1.03243 1.20821 0.97865 0.93428 0.99890 1.21507 0.94181 0.98105 0.96964 1.22169 0.95304 0.99675 1.01645 1.22770 1.00377 0.87599 0.96019 1.67539 1.07729 1.31528 1.10607 1.21202 0.89722 0.94757 0.96735 1.19933 0.97452 0.90741 0.86118 1.44005 1.65848 1.24195 1.04670 1.17354 0.98435 0.88021 0.93313 1.20215 1.04109 0.98113 0.93829 1.20983 1.04244 0.96042 0.99646 1.19236 0.93293 0.88406 0.92949 1.83986 1.63812 1.32732 1.28846 1.21233 1.40974 1.03110 0.80973 0.89474 1.25209 0.96781 0.95033 0.99687 1.70050 1.37800 1.10728 1.32038 0.85771 0.78846 0.78169 0.80954 1.20089 1.20424 1.19371 1.20019 1.04541 0.97864 0.94519 1.20167 1.03950 0.95871 0.96768 0.90397 0.91408 0.90323 0.84804 0.84798 0.82716 0.91278 0.91079 0.77653 0.87706 0.85517 0.92332 0.86489 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.62 36.00 0.35 -0.58 16 2 C -0.12 -1.11 5.90 -104.49 -0.62 -1.73 16 3 C -0.08 -0.64 9.86 -39.28 -0.39 -1.03 16 4 C -0.17 -1.26 10.11 -39.44 -0.40 -1.66 16 5 C 0.09 0.83 11.18 -17.55 -0.20 0.64 16 6 N -0.47 -5.67 10.27 -9.47 -0.10 -5.76 16 7 C 0.11 1.31 6.15 -82.59 -0.51 0.80 16 8 C 0.18 2.26 4.80 -5.20 -0.02 2.24 16 9 N -0.75 -10.62 5.73 -59.76 -0.34 -10.96 16 10 C 0.13 2.22 6.66 -83.70 -0.56 1.66 16 11 C -0.14 -2.64 9.89 -39.40 -0.39 -3.03 16 12 C -0.19 -4.20 9.16 -39.42 -0.36 -4.57 16 13 C 0.11 2.81 6.65 -39.09 -0.26 2.55 16 14 O -0.19 -5.52 9.76 -0.04 0.00 -5.53 16 15 C -0.39 -11.08 9.48 30.87 0.29 -10.79 16 16 H 0.09 2.32 5.20 -52.48 -0.27 2.04 16 17 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 18 N -0.87 -26.22 13.67 55.48 0.76 -25.46 16 19 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 C -0.15 -3.22 9.98 -39.42 -0.39 -3.61 16 24 C -0.15 -2.65 9.30 -39.40 -0.37 -3.02 16 25 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 27 H 0.08 0.66 5.95 -51.93 -0.31 0.35 16 28 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 29 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 30 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.07 0.93 7.95 -51.93 -0.41 0.51 16 32 H 0.07 0.80 5.74 -51.93 -0.30 0.50 16 33 H 0.39 5.21 8.48 -40.82 -0.35 4.86 16 34 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 35 H 0.13 2.82 5.63 -52.49 -0.30 2.53 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 38 H 0.11 1.71 6.73 -52.48 -0.35 1.36 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -32.82 325.05 -8.10 -40.93 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.38 Total: 7.02 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -3.92 Total: -21.22 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.32 Total: -42.19 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: 0.00 Total: -5.53 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.82 -8.10 -40.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320291225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.301 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds