Wall clock time and date at job start Tue Mar 31 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38665 * 120.42296 * 2 1 4 4 C 1.38629 * 118.42252 * 180.24794 * 3 2 1 5 5 C 1.38222 * 119.16071 * 359.75082 * 4 3 2 6 6 N 1.31852 * 120.76562 * 0.02562 * 5 4 3 7 7 C 1.31887 * 121.72491 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.61950 * 179.97438 * 7 6 5 9 9 N 1.46495 * 109.46732 * 90.00381 * 8 7 6 10 10 C 1.39785 * 119.99884 * 180.02562 * 9 8 7 11 11 C 1.38950 * 120.00811 * 179.97438 * 10 9 8 12 12 C 1.38013 * 119.99674 * 180.02562 * 11 10 9 13 13 C 1.38901 * 120.00276 * 0.02562 * 12 11 10 14 14 O 1.35792 * 119.99457 * 179.97438 * 13 12 11 15 15 C 1.34816 * 117.00137 * 354.45290 * 14 13 12 16 16 H 1.08010 * 119.99647 * 5.06210 * 15 14 13 17 17 C 1.38620 * 120.00540 * 185.05841 * 15 14 13 18 18 N 1.31582 * 119.99901 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00232 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47143 * 89.99606 * 19 17 15 21 21 H 1.48500 * 109.46995 * 210.00150 * 19 17 15 22 22 H 1.48507 * 109.47006 * 330.00110 * 19 17 15 23 23 C 1.38894 * 120.01424 * 0.26869 * 13 12 11 24 24 C 1.38013 * 120.00372 * 359.45418 * 23 13 12 25 25 H 1.09010 * 109.46793 * 270.25099 * 1 2 3 26 26 H 1.09001 * 109.47235 * 30.24534 * 1 2 3 27 27 H 1.08999 * 109.47639 * 150.24978 * 1 2 3 28 28 H 1.08004 * 120.78685 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.41945 * 179.72631 * 4 3 2 30 30 H 1.08003 * 119.61560 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46765 * 330.00722 * 8 7 6 32 32 H 1.08991 * 109.47341 * 210.00364 * 8 7 6 33 33 H 0.97000 * 120.00771 * 359.97438 * 9 8 7 34 34 H 1.08004 * 120.00160 * 0.02562 * 11 10 9 35 35 H 1.07989 * 119.99834 * 179.97438 * 12 11 10 36 36 H 0.97001 * 119.99978 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.99781 * 179.71132 * 23 13 12 38 38 H 1.08009 * 120.00306 * 180.27600 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1957 0.0000 4 6 3.5945 1.1473 -0.0053 5 6 4.2255 -0.0825 -0.0051 6 7 3.5254 -1.1997 -0.0005 7 6 2.2065 -1.1917 0.0046 8 6 1.4538 -2.4972 0.0092 9 7 1.2152 -2.9184 1.3919 10 6 0.5301 -4.1089 1.6515 11 6 0.3041 -4.5088 2.9629 12 6 -0.3718 -5.6845 3.2190 13 6 -0.8257 -6.4682 2.1659 14 8 -1.4903 -7.6253 2.4180 15 6 -1.5758 -8.0138 3.7062 16 1 -1.1988 -7.3729 4.4896 17 6 -2.1476 -9.2356 4.0252 18 7 -2.6064 -10.0165 3.0707 19 14 -2.2667 -9.7735 5.8101 20 1 -3.5526 -9.3025 6.3843 21 1 -2.2038 -11.2552 5.8858 22 1 -1.1381 -9.1902 6.5792 23 6 -0.5946 -6.0718 0.8549 24 6 0.0762 -4.8933 0.5983 25 1 -0.3633 0.0045 1.0278 26 1 -0.3634 0.8878 -0.5176 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6890 2.1423 0.0004 29 1 4.1735 2.0590 -0.0099 30 1 5.3045 -0.1287 -0.0087 31 1 2.0414 -3.2572 -0.5059 32 1 0.4994 -2.3681 -0.5011 33 1 1.5331 -2.3716 2.1273 34 1 0.6574 -3.8996 3.7818 35 1 -0.5471 -5.9955 4.2381 36 1 -3.0062 -10.8716 3.2940 37 1 -0.9436 -6.6838 0.0363 38 1 0.2520 -4.5829 -0.4212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320291225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:13 Heat of formation + Delta-G solvation = 18.112298 kcal Electronic energy + Delta-G solvation = -20612.125594 eV Core-core repulsion = 17419.408139 eV Total energy + Delta-G solvation = -3192.717455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.40342 -40.64419 -38.71405 -36.11115 -34.54632 -34.13251 -32.97582 -31.79543 -29.54761 -28.20453 -27.50446 -26.36643 -23.98600 -23.31701 -22.60954 -22.11327 -19.68342 -18.86705 -18.19835 -17.71484 -17.16613 -16.65587 -16.19450 -15.81331 -15.52914 -15.40942 -15.22057 -14.86726 -14.68760 -14.38125 -14.05922 -13.99917 -13.70446 -13.64644 -13.43036 -13.34365 -13.00495 -12.89539 -12.57392 -12.29988 -12.13124 -12.07542 -11.09094 -10.91319 -10.68951 -10.38715 -10.18967 -9.82883 -9.76522 -8.38216 -7.94934 -6.01842 0.06026 0.33036 0.59671 0.93837 1.37390 1.47207 1.54846 2.23606 2.48694 2.92425 3.01710 3.25632 3.31074 3.68539 3.72585 3.93133 3.98105 4.11794 4.13261 4.19123 4.45453 4.57352 4.58614 4.61806 4.69066 4.74070 4.79126 4.84882 4.96225 5.13453 5.20867 5.24994 5.28542 5.34775 5.46615 5.55190 5.78155 5.79310 5.98033 6.12589 6.56261 6.93238 7.04107 7.07678 7.94596 8.86374 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.041241 B = 0.002767 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.772545 B =10117.029678 C =10239.485252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.157 4.157 5 C 0.074 3.926 6 N -0.501 5.501 7 C 0.090 3.910 8 C 0.181 3.819 9 N -0.737 5.737 10 C 0.155 3.845 11 C -0.144 4.144 12 C -0.192 4.192 13 C 0.064 3.936 14 O -0.242 6.242 15 C -0.406 4.406 16 H 0.098 0.902 17 C -0.029 4.029 18 N -0.927 5.927 19 Si 1.017 2.983 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.254 1.254 23 C -0.153 4.153 24 C -0.143 4.143 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.163 0.837 29 H 0.167 0.833 30 H 0.174 0.826 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.398 0.602 34 H 0.136 0.864 35 H 0.119 0.881 36 H 0.270 0.730 37 H 0.115 0.885 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.499 25.726 -5.167 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.176 4.176 5 C -0.083 4.083 6 N -0.210 5.210 7 C -0.047 4.047 8 C 0.057 3.943 9 N -0.371 5.371 10 C 0.054 3.946 11 C -0.166 4.166 12 C -0.212 4.212 13 C 0.014 3.986 14 O -0.150 6.150 15 C -0.482 4.482 16 H 0.115 0.885 17 C -0.225 4.225 18 N -0.567 5.567 19 Si 0.836 3.164 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.178 1.178 23 C -0.173 4.173 24 C -0.166 4.166 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.180 0.820 29 H 0.185 0.815 30 H 0.191 0.809 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.233 0.767 34 H 0.154 0.846 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.747 24.588 -5.559 27.404 hybrid contribution -0.387 0.187 0.911 1.007 sum 10.360 24.775 -4.648 27.253 Atomic orbital electron populations 1.20879 0.89003 1.04039 1.03269 1.20986 0.98526 0.93392 0.99450 1.21909 0.94542 0.98655 0.95807 1.22542 0.95524 1.00207 0.99356 1.23201 1.01369 0.87721 0.96008 1.67453 1.08300 1.33367 1.11866 1.21018 0.89825 0.94725 0.99133 1.20017 0.98282 0.91441 0.84569 1.44084 1.64137 1.22669 1.06234 1.17469 0.96106 0.88292 0.92697 1.20451 1.03459 0.97251 0.95467 1.21034 1.04476 0.96963 0.98710 1.19726 0.95577 0.88399 0.94884 1.83935 1.66630 1.35225 1.29195 1.21753 1.41128 1.03815 0.81527 0.88465 1.26524 0.96158 0.94745 1.05059 1.70206 1.40023 1.11549 1.34903 0.84615 0.79562 0.77770 0.74424 1.18869 1.19786 1.17813 1.20229 1.04649 0.98973 0.93466 1.20424 1.02862 0.94600 0.98677 0.90593 0.89399 0.91045 0.81959 0.81550 0.80898 0.92346 0.89663 0.76744 0.84634 0.86303 0.92159 0.86722 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.62 71.23 0.69 -0.82 16 2 C -0.12 -1.94 5.90 -19.78 -0.12 -2.05 16 3 C -0.08 -0.99 9.86 22.47 0.22 -0.76 16 4 C -0.16 -1.75 10.11 22.36 0.23 -1.52 16 5 C 0.07 1.18 11.18 84.69 0.95 2.13 16 6 N -0.50 -11.26 10.27 -183.88 -1.89 -13.15 16 7 C 0.09 1.88 6.15 42.54 0.26 2.14 16 8 C 0.18 4.10 4.80 85.63 0.41 4.51 16 9 N -0.74 -18.96 5.73 -342.98 -1.96 -20.93 16 10 C 0.15 5.12 6.66 38.21 0.25 5.38 16 11 C -0.14 -5.21 9.89 22.39 0.22 -4.99 16 12 C -0.19 -8.67 9.16 22.38 0.20 -8.47 16 13 C 0.06 3.29 6.65 22.59 0.15 3.44 16 14 O -0.24 -15.06 9.76 -23.06 -0.22 -15.28 16 15 C -0.41 -24.41 9.48 67.91 0.64 -23.76 16 16 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 17 C -0.03 -1.69 5.49 84.82 0.47 -1.22 16 18 N -0.93 -58.74 13.67 21.61 0.30 -58.44 16 19 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 20 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16 23 C -0.15 -6.77 9.98 22.37 0.22 -6.54 16 24 C -0.14 -5.06 9.30 22.39 0.21 -4.85 16 25 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.09 0.78 8.10 -2.39 -0.02 0.76 16 27 H 0.07 1.03 5.95 -2.39 -0.01 1.01 16 28 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 29 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 30 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.06 1.47 7.95 -2.38 -0.02 1.45 16 32 H 0.09 1.71 5.74 -2.39 -0.01 1.69 16 33 H 0.40 9.47 8.48 -92.71 -0.79 8.68 16 34 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.12 5.44 5.63 -2.92 -0.02 5.43 16 36 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 37 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 38 H 0.14 4.09 6.73 -2.91 -0.02 4.07 16 Total: -1.00 -76.15 325.05 3.56 -72.58 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.31 Total: 26.23 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 5.01 Total: -37.39 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -3.56 Total: -92.52 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.22 Total: -15.28 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -76.15 3.56 -72.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320291225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.696 kcal (2) G-P(sol) polarization free energy of solvation -76.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds