Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47157 * 2 1 4 4 C 1.50696 * 109.47163 * 239.99409 * 2 1 3 5 5 H 1.07996 * 120.00295 * 239.99886 * 4 2 1 6 6 C 1.37879 * 120.00042 * 60.00139 * 4 2 1 7 7 N 1.31508 * 120.00528 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99846 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.46963 * 270.00275 * 8 6 4 10 10 H 1.48500 * 109.47107 * 29.99756 * 8 6 4 11 11 H 1.48496 * 109.47366 * 150.00204 * 8 6 4 12 12 C 1.50705 * 109.46969 * 119.99536 * 2 1 3 13 13 O 1.21286 * 119.99576 * 120.00209 * 12 2 1 14 14 N 1.34772 * 120.00172 * 300.00110 * 12 2 1 15 15 C 1.39950 * 120.00207 * 174.72126 * 14 12 2 16 16 C 1.38999 * 119.99798 * 146.75148 * 15 14 12 17 17 C 1.38210 * 120.24033 * 179.97438 * 16 15 14 18 18 C 1.38020 * 120.22635 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00493 * 179.97438 * 18 17 16 20 20 C 1.52998 * 117.50168 * 8.62882 * 19 18 17 21 21 C 1.52994 * 59.99988 * 252.50592 * 20 19 18 22 22 C 1.39641 * 119.98463 * 0.02562 * 18 17 16 23 23 C 1.43198 * 120.11363 * 180.02562 * 22 18 17 24 24 N 7.37250 * 98.36721 * 140.56018 * 2 1 3 25 25 C 1.38584 * 119.99774 * 326.48523 * 15 14 12 26 26 H 1.09006 * 109.47181 * 300.00316 * 1 2 3 27 27 H 1.09001 * 109.47060 * 60.00778 * 1 2 3 28 28 H 1.09007 * 109.47244 * 180.02562 * 1 2 3 29 29 H 0.96993 * 120.00629 * 180.02562 * 7 6 4 30 30 H 0.97006 * 119.99865 * 354.72311 * 14 12 2 31 31 H 1.08000 * 119.87840 * 359.96665 * 16 15 14 32 32 H 1.08002 * 119.88959 * 180.02562 * 17 16 15 33 33 H 1.09000 * 115.54807 * 154.33153 * 19 18 17 34 34 H 1.09004 * 117.49771 * 359.97438 * 20 19 18 35 35 H 1.09003 * 117.50231 * 145.01508 * 20 19 18 36 36 H 1.08997 * 117.50342 * 252.50888 * 21 20 19 37 37 H 1.09002 * 117.50349 * 107.48285 * 21 20 19 38 38 H 1.08004 * 120.10887 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1380 -0.8592 -3.5565 8 14 0.6259 1.2797 -2.6542 9 1 -0.8020 0.8743 -2.6993 10 1 0.8492 2.1772 -1.4924 11 1 0.9772 1.9951 -3.9072 12 6 2.0323 -0.7103 1.2306 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.0794 -0.9700 3.5952 16 6 2.3973 -0.2969 4.7691 17 6 2.7655 -1.0032 5.8986 18 6 2.8207 -2.3819 5.8687 19 6 3.2234 -3.1470 7.1030 20 6 3.3623 -2.3603 8.4078 21 6 4.6108 -2.8695 7.6849 22 6 2.5043 -3.0677 4.6941 23 6 2.5601 -4.4982 4.6602 24 7 2.6028 -5.6331 4.6337 25 6 2.1262 -2.3545 3.5559 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.9040 -0.5278 -4.4374 30 1 1.2140 0.5809 2.5450 31 1 2.3565 0.7819 4.7985 32 1 3.0109 -0.4744 6.8078 33 1 2.8452 -4.1672 7.1679 34 1 3.1628 -1.2892 8.3734 35 1 3.0754 -2.8628 9.3316 36 1 5.1454 -3.7070 8.1330 37 1 5.2325 -2.1336 7.1749 38 1 1.8750 -2.8795 2.6460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893798708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = 49.128545 kcal Electronic energy + Delta-G solvation = -21122.933107 eV Core-core repulsion = 17931.560617 eV Total energy + Delta-G solvation = -3191.372489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.54833 -39.11671 -36.96168 -36.43122 -34.17101 -33.97706 -31.46734 -31.34948 -29.38348 -25.24861 -24.59189 -24.14056 -22.83318 -22.51568 -20.71161 -19.59071 -19.07626 -16.89219 -16.74816 -16.36054 -15.84008 -15.63535 -14.76134 -14.73353 -14.62422 -14.09130 -13.85182 -13.44187 -13.16175 -13.07070 -12.97035 -12.68539 -12.46464 -12.38798 -11.92197 -11.75858 -11.56011 -11.43783 -11.21829 -11.04402 -10.72435 -10.67124 -10.40183 -9.86525 -9.73594 -9.21492 -9.12973 -8.86950 -8.66041 -7.94364 -6.12756 -4.14756 0.68841 1.19479 2.68719 2.82625 3.17330 3.23277 3.30958 3.31921 3.38596 3.52575 3.89786 3.95743 4.28610 4.30152 4.54890 4.66164 4.75923 4.93800 5.09883 5.15857 5.29226 5.33255 5.40584 5.50075 5.55508 5.76094 5.80571 5.85460 5.98913 6.07071 6.14746 6.22898 6.30884 6.31745 6.43058 6.59903 6.97801 7.02655 7.39773 7.50647 7.78613 8.42829 8.75116 9.05529 9.44546 10.99960 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.030081 B = 0.003695 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.589275 B = 7575.779630 C = 8125.693272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.001 4.001 3 H 0.056 0.944 4 C -0.512 4.512 5 H 0.094 0.906 6 C 0.072 3.928 7 N -0.892 5.892 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.267 1.267 11 H -0.295 1.295 12 C 0.526 3.474 13 O -0.505 6.505 14 N -0.688 5.688 15 C 0.162 3.838 16 C -0.121 4.121 17 C -0.102 4.102 18 C -0.032 4.032 19 C -0.123 4.123 20 C -0.172 4.172 21 C -0.167 4.167 22 C -0.006 4.006 23 C 0.264 3.736 24 N -0.422 5.422 25 C -0.073 4.073 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.266 0.734 30 H 0.410 0.590 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 4.678 22.634 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 H 0.074 0.926 4 C -0.550 4.550 5 H 0.112 0.888 6 C -0.130 4.130 7 N -0.530 5.530 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.192 1.192 11 H -0.222 1.222 12 C 0.316 3.684 13 O -0.377 6.377 14 N -0.335 5.335 15 C 0.066 3.934 16 C -0.142 4.142 17 C -0.121 4.121 18 C -0.036 4.036 19 C -0.142 4.142 20 C -0.208 4.208 21 C -0.204 4.204 22 C -0.010 4.010 23 C -0.051 4.051 24 N -0.097 5.097 25 C -0.096 4.096 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.246 0.754 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.801 2.189 22.170 22.292 hybrid contribution -0.894 1.675 -0.327 1.926 sum -1.696 3.864 21.843 22.246 Atomic orbital electron populations 1.22149 0.96959 1.01792 0.99551 1.19330 0.93381 0.97710 0.91873 0.92597 1.20899 1.32582 1.14359 0.87141 0.88771 1.24974 0.95738 0.96564 0.95715 1.69867 1.45081 1.40071 0.97954 0.86919 0.80716 0.83709 0.77233 1.20426 1.19191 1.22207 1.21651 0.78364 0.84715 0.83633 1.90624 1.35146 1.25957 1.85960 1.44096 1.57997 1.26854 1.04550 1.17648 0.97556 0.90690 0.87490 1.21098 1.00558 1.00257 0.92329 1.20662 1.00563 0.92498 0.98360 1.18958 0.99334 0.93193 0.92098 1.21001 1.01545 0.99699 0.91917 1.23074 1.02129 1.00571 0.95074 1.23057 0.90352 1.03729 1.03212 1.15589 1.06402 0.84404 0.94576 1.25564 0.93634 0.92600 0.93353 1.81210 1.08757 1.11997 1.07726 1.21252 0.97800 0.92892 0.97687 0.94642 0.92976 0.92184 0.92409 0.75415 0.84901 0.84796 0.87216 0.88010 0.88390 0.88439 0.88117 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.58 37.16 0.32 -2.46 16 2 C 0.00 -0.03 2.23 -92.92 -0.21 -0.24 16 3 H 0.06 1.15 7.20 -51.93 -0.37 0.78 16 4 C -0.51 -14.14 8.96 -34.44 -0.31 -14.45 16 5 H 0.09 2.98 7.00 -52.49 -0.37 2.62 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 8 Si 0.88 20.39 24.37 -169.99 -4.14 16.25 16 9 H -0.28 -6.20 6.87 56.52 0.39 -5.81 16 10 H -0.27 -5.61 6.53 56.52 0.37 -5.24 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 C 0.53 10.45 6.88 -10.99 -0.08 10.37 16 13 O -0.51 -11.97 13.16 5.55 0.07 -11.90 16 14 N -0.69 -9.89 5.19 -9.89 -0.05 -9.94 16 15 C 0.16 2.18 6.27 -83.74 -0.53 1.65 16 16 C -0.12 -1.20 9.95 -39.31 -0.39 -1.59 16 17 C -0.10 -0.92 9.28 -39.67 -0.37 -1.29 16 18 C -0.03 -0.35 5.65 -104.18 -0.59 -0.94 16 19 C -0.12 -1.14 5.53 -91.78 -0.51 -1.65 16 20 C -0.17 -1.15 9.86 -26.74 -0.26 -1.41 16 21 C -0.17 -1.29 10.16 -26.74 -0.27 -1.56 16 22 C -0.01 -0.08 5.73 -106.96 -0.61 -0.69 16 23 C 0.26 3.94 13.92 -22.47 -0.31 3.63 16 24 N -0.42 -6.98 18.54 41.84 0.78 -6.20 16 25 C -0.07 -1.10 8.36 -38.97 -0.33 -1.43 16 26 H 0.03 0.51 7.69 -51.93 -0.40 0.11 16 27 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 28 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.41 4.44 8.41 -40.82 -0.34 4.09 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 0.84 6.01 -52.49 -0.32 0.52 16 33 H 0.11 1.10 7.35 -51.93 -0.38 0.72 16 34 H 0.10 0.56 6.17 -51.93 -0.32 0.24 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.15 2.62 6.43 -52.48 -0.34 2.28 16 LS Contribution 320.98 15.07 4.84 4.84 Total: -1.00 -32.85 320.98 -6.57 -39.43 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.30 Total: 3.81 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -4.54 Total: -10.12 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 1.50 Total: -42.30 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.07 Total: -11.90 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.14 Total: 16.25 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.85 -6.57 -39.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893798708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.556 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds