Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47157 * 2 1 4 4 C 1.50696 * 109.47163 * 239.99409 * 2 1 3 5 5 H 1.07996 * 120.00295 * 239.99886 * 4 2 1 6 6 C 1.37879 * 120.00042 * 60.00139 * 4 2 1 7 7 N 1.31508 * 120.00528 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99846 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.46963 * 270.00275 * 8 6 4 10 10 H 1.48500 * 109.47107 * 29.99756 * 8 6 4 11 11 H 1.48496 * 109.47366 * 150.00204 * 8 6 4 12 12 C 1.50705 * 109.46969 * 119.99536 * 2 1 3 13 13 O 1.21286 * 119.99576 * 120.00209 * 12 2 1 14 14 N 1.34772 * 120.00172 * 300.00110 * 12 2 1 15 15 C 1.39950 * 120.00207 * 174.72126 * 14 12 2 16 16 C 1.38999 * 119.99798 * 146.75148 * 15 14 12 17 17 C 1.38210 * 120.24033 * 179.97438 * 16 15 14 18 18 C 1.38020 * 120.22635 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00493 * 179.97438 * 18 17 16 20 20 C 1.52998 * 117.50168 * 8.62882 * 19 18 17 21 21 C 1.52994 * 59.99988 * 252.50592 * 20 19 18 22 22 C 1.39641 * 119.98463 * 0.02562 * 18 17 16 23 23 C 1.43198 * 120.11363 * 180.02562 * 22 18 17 24 24 N 7.37250 * 98.36721 * 140.56018 * 2 1 3 25 25 C 1.38584 * 119.99774 * 326.48523 * 15 14 12 26 26 H 1.09006 * 109.47181 * 300.00316 * 1 2 3 27 27 H 1.09001 * 109.47060 * 60.00778 * 1 2 3 28 28 H 1.09007 * 109.47244 * 180.02562 * 1 2 3 29 29 H 0.96993 * 120.00629 * 180.02562 * 7 6 4 30 30 H 0.97006 * 119.99865 * 354.72311 * 14 12 2 31 31 H 1.08000 * 119.87840 * 359.96665 * 16 15 14 32 32 H 1.08002 * 119.88959 * 180.02562 * 17 16 15 33 33 H 1.09000 * 115.54807 * 154.33153 * 19 18 17 34 34 H 1.09004 * 117.49771 * 359.97438 * 20 19 18 35 35 H 1.09003 * 117.50231 * 145.01508 * 20 19 18 36 36 H 1.08997 * 117.50342 * 252.50888 * 21 20 19 37 37 H 1.09002 * 117.50349 * 107.48285 * 21 20 19 38 38 H 1.08004 * 120.10887 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1380 -0.8592 -3.5565 8 14 0.6259 1.2797 -2.6542 9 1 -0.8020 0.8743 -2.6993 10 1 0.8492 2.1772 -1.4924 11 1 0.9772 1.9951 -3.9072 12 6 2.0323 -0.7103 1.2306 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.0794 -0.9700 3.5952 16 6 2.3973 -0.2969 4.7691 17 6 2.7655 -1.0032 5.8986 18 6 2.8207 -2.3819 5.8687 19 6 3.2234 -3.1470 7.1030 20 6 3.3623 -2.3603 8.4078 21 6 4.6108 -2.8695 7.6849 22 6 2.5043 -3.0677 4.6941 23 6 2.5601 -4.4982 4.6602 24 7 2.6028 -5.6331 4.6337 25 6 2.1262 -2.3545 3.5559 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.9040 -0.5278 -4.4374 30 1 1.2140 0.5809 2.5450 31 1 2.3565 0.7819 4.7985 32 1 3.0109 -0.4744 6.8078 33 1 2.8452 -4.1672 7.1679 34 1 3.1628 -1.2892 8.3734 35 1 3.0754 -2.8628 9.3316 36 1 5.1454 -3.7070 8.1330 37 1 5.2325 -2.1336 7.1749 38 1 1.8750 -2.8795 2.6460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893798708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = 26.868374 kcal Electronic energy + Delta-G solvation = -21123.898380 eV Core-core repulsion = 17931.560617 eV Total energy + Delta-G solvation = -3192.337763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.68884 -40.30733 -37.82534 -37.66529 -35.84745 -35.37641 -33.33207 -32.34908 -30.44768 -27.12180 -25.78669 -25.13705 -24.07937 -23.15331 -21.69744 -20.92791 -20.21565 -18.79118 -17.93698 -17.34821 -17.14262 -16.87828 -16.36550 -15.87156 -15.58225 -15.22154 -15.12177 -14.96221 -14.56387 -14.26968 -14.08907 -14.03153 -13.79456 -13.57310 -13.43275 -12.82394 -12.72338 -12.53667 -12.31758 -12.19371 -12.10599 -11.95749 -11.45395 -11.29828 -11.22909 -10.91490 -10.76392 -10.51963 -9.96879 -8.97740 -8.26486 -6.35675 -0.28318 0.23066 1.35764 1.42387 1.48863 1.53930 1.63922 1.96388 2.17687 2.36037 2.69493 2.81722 3.07581 3.13589 3.53272 3.80317 3.98283 4.01935 4.11106 4.19429 4.32251 4.40087 4.43450 4.54715 4.60238 4.70051 4.80387 4.88308 4.95470 5.02129 5.14740 5.20033 5.27078 5.31289 5.45447 5.45756 5.47501 5.53276 5.91228 6.23986 6.32721 6.60330 6.81419 7.24515 7.38108 8.91345 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.030081 B = 0.003695 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.589275 B = 7575.779630 C = 8125.693272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.005 4.005 3 H 0.081 0.919 4 C -0.525 4.525 5 H 0.027 0.973 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.961 3.039 9 H -0.263 1.263 10 H -0.220 1.220 11 H -0.303 1.303 12 C 0.527 3.473 13 O -0.561 6.561 14 N -0.663 5.663 15 C 0.135 3.865 16 C -0.089 4.089 17 C -0.091 4.091 18 C -0.015 4.015 19 C -0.153 4.153 20 C -0.144 4.144 21 C -0.168 4.168 22 C -0.029 4.029 23 C 0.277 3.723 24 N -0.464 5.464 25 C -0.095 4.095 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.267 0.733 30 H 0.431 0.569 31 H 0.177 0.823 32 H 0.179 0.821 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.681 9.366 26.781 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 H 0.099 0.901 4 C -0.563 4.563 5 H 0.046 0.954 6 C -0.192 4.192 7 N -0.595 5.595 8 Si 0.786 3.214 9 H -0.189 1.189 10 H -0.143 1.143 11 H -0.231 1.231 12 C 0.317 3.683 13 O -0.437 6.437 14 N -0.311 5.311 15 C 0.040 3.960 16 C -0.110 4.110 17 C -0.109 4.109 18 C -0.018 4.018 19 C -0.171 4.171 20 C -0.181 4.181 21 C -0.205 4.205 22 C -0.033 4.033 23 C -0.038 4.038 24 N -0.140 5.140 25 C -0.118 4.118 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.272 0.728 31 H 0.194 0.806 32 H 0.196 0.804 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.140 6.905 26.406 27.377 hybrid contribution -0.375 0.103 -1.474 1.524 sum -2.515 7.008 24.932 26.020 Atomic orbital electron populations 1.22059 0.94178 1.01689 1.02045 1.19272 0.95464 0.97906 0.89997 0.90133 1.21113 1.31784 1.12924 0.90510 0.95431 1.26092 0.97472 1.00908 0.94750 1.70085 1.47670 1.42950 0.98817 0.85692 0.78508 0.78891 0.78351 1.18853 1.14286 1.23112 1.21338 0.77952 0.83917 0.85127 1.90626 1.37837 1.28318 1.86925 1.43542 1.57266 1.27185 1.03065 1.17794 0.99894 0.89913 0.88357 1.21520 0.96991 1.02241 0.90262 1.21151 0.98713 0.91422 0.99634 1.19254 0.96985 0.94322 0.91260 1.20996 1.03526 0.99591 0.93000 1.23245 0.99704 1.01496 0.93637 1.23155 0.90084 1.04121 1.03132 1.15675 1.08714 0.83359 0.95583 1.26000 0.92474 0.93122 0.92155 1.81187 1.10548 1.13162 1.09108 1.21006 0.99785 0.94232 0.96773 0.88853 0.93444 0.93862 0.92441 0.72850 0.80569 0.80380 0.88906 0.85636 0.87232 0.88251 0.87609 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 8.58 71.98 0.62 -4.35 16 2 C 0.00 -0.20 2.23 -12.29 -0.03 -0.23 16 3 H 0.08 3.04 7.20 -2.39 -0.02 3.02 16 4 C -0.53 -30.50 8.96 25.60 0.23 -30.27 16 5 H 0.03 1.91 7.00 -2.91 -0.02 1.89 16 6 C 0.00 0.23 5.45 84.66 0.46 0.69 16 7 N -0.96 -61.01 13.96 21.45 0.30 -60.71 16 8 Si 0.96 41.35 24.37 68.60 1.67 43.02 16 9 H -0.26 -10.63 6.87 99.48 0.68 -9.95 16 10 H -0.22 -7.80 6.53 99.48 0.65 -7.15 16 11 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 12 C 0.53 21.10 6.88 87.66 0.60 21.71 16 13 O -0.56 -28.57 13.16 -3.05 -0.04 -28.61 16 14 N -0.66 -17.49 5.19 -303.61 -1.58 -19.07 16 15 C 0.14 3.37 6.27 38.11 0.24 3.60 16 16 C -0.09 -1.31 9.95 22.45 0.22 -1.09 16 17 C -0.09 -1.17 9.28 22.21 0.21 -0.96 16 18 C -0.01 -0.28 5.65 -19.58 -0.11 -0.40 16 19 C -0.15 -2.48 5.53 -11.54 -0.06 -2.54 16 20 C -0.14 -1.26 9.86 30.59 0.30 -0.96 16 21 C -0.17 -2.09 10.16 30.59 0.31 -1.78 16 22 C -0.03 -0.80 5.73 -21.38 -0.12 -0.92 16 23 C 0.28 8.86 13.92 88.33 1.23 10.09 16 24 N -0.46 -16.56 18.54 19.00 0.35 -16.20 16 25 C -0.09 -2.96 8.36 22.67 0.19 -2.78 16 26 H 0.09 2.17 7.69 -2.38 -0.02 2.16 16 27 H 0.05 1.71 3.27 -2.39 -0.01 1.70 16 28 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 30 H 0.43 7.25 8.41 -92.70 -0.78 6.47 16 31 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.18 0.83 6.01 -2.91 -0.02 0.81 16 33 H 0.09 1.83 7.35 -2.39 -0.02 1.82 16 34 H 0.13 0.51 6.17 -2.38 -0.01 0.50 16 35 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 4.18 6.43 -2.91 -0.02 4.16 16 Total: -1.00 -83.34 320.98 5.25 -78.09 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.26 Total: 13.67 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 4.29 Total: -10.19 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -0.93 Total: -95.98 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.04 Total: -28.61 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.67 Total: 43.02 kcal Total: -83.34 5.25 -78.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893798708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.961 kcal (2) G-P(sol) polarization free energy of solvation -83.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds