Wall clock time and date at job start Tue Mar 31 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00206 * 2 1 4 4 N 1.46907 * 109.46998 * 125.00080 * 3 2 1 5 5 C 1.46900 * 110.99928 * 179.97438 * 4 3 2 6 6 C 1.53346 * 109.42051 * 275.13331 * 5 4 3 7 7 C 1.53195 * 109.14901 * 178.67519 * 6 5 4 8 8 N 1.46919 * 108.89273 * 54.57640 * 7 6 5 9 9 C 1.34778 * 120.63255 * 126.34238 * 8 7 6 10 10 O 1.21279 * 120.00169 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00023 * 179.97438 * 9 8 7 12 12 S 1.81004 * 109.47124 * 179.97438 * 11 9 8 13 13 C 1.76202 * 100.00170 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99808 * 0.02562 * 13 12 11 15 15 C 1.38802 * 119.99850 * 179.97438 * 13 12 11 16 16 N 1.31629 * 120.00032 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99655 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47281 * 89.99944 * 17 15 13 19 19 H 1.48503 * 109.47201 * 209.99866 * 17 15 13 20 20 H 1.48500 * 109.47189 * 329.99935 * 17 15 13 21 21 C 1.46933 * 118.74003 * 306.32349 * 8 7 6 22 22 C 1.53034 * 109.45742 * 155.00274 * 5 4 3 23 23 H 1.08003 * 120.00309 * 359.97438 * 1 2 3 24 24 H 1.07998 * 119.99935 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99568 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.47187 * 5.00775 * 3 2 1 27 27 H 1.08994 * 109.47256 * 245.00333 * 3 2 1 28 28 H 1.00900 * 111.00005 * 303.95706 * 4 3 2 29 29 H 1.09001 * 109.45925 * 35.03526 * 5 4 3 30 30 H 1.08997 * 109.68637 * 58.70728 * 6 5 4 31 31 H 1.09002 * 109.47277 * 298.50984 * 6 5 4 32 32 H 1.09002 * 109.58720 * 294.71670 * 7 6 5 33 33 H 1.08996 * 109.58651 * 174.43567 * 7 6 5 34 34 H 1.09001 * 109.47488 * 299.99559 * 11 9 8 35 35 H 1.09001 * 109.47269 * 59.99982 * 11 9 8 36 36 H 0.96996 * 119.99581 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.58580 * 173.39910 * 21 8 7 38 38 H 1.09006 * 109.57831 * 293.67403 * 21 8 7 39 39 H 1.08994 * 109.50232 * 61.43691 * 22 5 4 40 40 H 1.09007 * 109.52628 * 301.35352 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9964 1.3318 1.1346 5 6 3.7506 2.5921 1.1663 6 6 4.9714 2.4790 0.2454 7 6 5.7348 3.8071 0.2575 8 7 6.0559 4.1586 1.6474 9 6 7.3244 4.4326 2.0110 10 8 8.2139 4.3900 1.1877 11 6 7.6376 4.7921 3.4406 12 16 9.4130 5.1010 3.6100 13 6 9.4938 5.4883 5.3270 14 1 8.5946 5.4808 5.9251 15 6 10.7133 5.8020 5.9110 16 7 11.8093 5.8106 5.1821 17 14 10.7990 6.2119 7.7314 18 1 11.0285 4.9676 8.5088 19 1 11.9162 7.1598 7.9733 20 1 9.5204 6.8342 8.1594 21 6 4.9677 4.2061 2.6336 22 6 4.2116 2.8743 2.5980 23 1 -0.5401 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8499 -0.9354 -0.0004 26 1 1.3586 2.1316 0.0897 27 1 2.6212 1.4026 -0.9313 28 1 2.5108 1.1786 2.0057 29 1 3.1120 3.4061 0.8234 30 1 4.6456 2.2559 -0.7706 31 1 5.6232 1.6815 0.6023 32 1 5.1157 4.5885 -0.1833 33 1 6.6562 3.7042 -0.3156 34 1 7.0843 5.6889 3.7193 35 1 7.3484 3.9690 4.0939 36 1 12.6615 6.0295 5.5903 37 1 5.3831 4.3641 3.6288 38 1 4.2874 5.0217 2.3879 39 1 4.8703 2.0730 2.9328 40 1 3.3441 2.9308 3.2557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199388485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:19 Heat of formation + Delta-G solvation = -18.049558 kcal Electronic energy + Delta-G solvation = -19766.660765 eV Core-core repulsion = 16707.819165 eV Total energy + Delta-G solvation = -3058.841599 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.99061 -38.03309 -36.04646 -33.69589 -32.42187 -31.67460 -30.69727 -28.76567 -25.88958 -25.47067 -23.56044 -23.20322 -20.89423 -20.16127 -18.97207 -17.70246 -16.77100 -16.46054 -15.59095 -15.53461 -15.27596 -14.79929 -14.61283 -14.38260 -14.03589 -13.85873 -13.60497 -13.10778 -12.85836 -12.81782 -12.63339 -12.23257 -11.92944 -11.72807 -11.45118 -11.28623 -11.05805 -11.01683 -10.82245 -10.77161 -10.73106 -9.84072 -9.79482 -9.33464 -9.06004 -8.78100 -8.51994 -8.21253 -6.49125 -6.20839 -3.91332 1.83775 2.95161 3.07181 3.22705 3.26517 3.30699 3.60858 3.84054 4.20803 4.45342 4.52512 4.65226 4.74084 4.90063 4.94553 5.09258 5.14116 5.14625 5.18432 5.24764 5.32494 5.46383 5.50572 5.53759 5.58781 5.65560 5.70497 5.88246 5.92096 5.97966 6.12318 6.16154 6.21957 6.28308 6.66300 6.72606 7.05409 7.57610 7.60434 8.35808 8.58538 9.24329 10.86590 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.035230 B = 0.002934 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.580662 B = 9540.316933 C =10085.039688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 C 0.084 3.916 4 N -0.684 5.684 5 C 0.089 3.911 6 C -0.120 4.120 7 C 0.113 3.887 8 N -0.620 5.620 9 C 0.535 3.465 10 O -0.517 6.517 11 C -0.150 4.150 12 S -0.062 6.062 13 C -0.535 4.535 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.112 3.888 22 C -0.137 4.137 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.115 0.885 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.343 0.657 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.625 -7.673 -7.937 25.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.166 4.166 3 C -0.045 4.045 4 N -0.315 5.315 5 C -0.020 4.020 6 C -0.159 4.159 7 C -0.011 4.011 8 N -0.356 5.356 9 C 0.323 3.677 10 O -0.391 6.391 11 C -0.301 4.301 12 S 0.165 5.835 13 C -0.683 4.683 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.012 4.012 22 C -0.176 4.176 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.133 0.867 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.161 0.839 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.594 -8.033 -9.504 24.062 hybrid contribution -1.820 0.842 2.449 3.165 sum -22.414 -7.191 -7.055 24.574 Atomic orbital electron populations 1.23899 0.95964 1.01910 1.01236 1.22959 0.95533 0.98843 0.99305 1.21131 0.93579 0.94244 0.95550 1.60443 1.29317 1.35448 1.06266 1.21578 0.94736 0.89826 0.95895 1.21972 0.96392 0.97981 0.99555 1.21519 1.00838 0.95427 0.83297 1.48101 1.07224 1.70818 1.09497 1.20327 0.81284 0.75700 0.90353 1.90687 1.45013 1.50528 1.52888 1.23552 1.07604 1.04045 0.94892 1.85415 0.95651 1.89997 1.12417 1.22855 0.96687 1.54457 0.94284 0.90965 1.24996 0.94700 0.94860 0.99066 1.70019 0.98695 1.45557 1.35985 0.86169 0.77938 0.78360 0.83032 1.20268 1.20760 1.19714 1.21652 0.89254 0.96594 0.93744 1.22113 1.00768 0.98753 0.95920 0.88769 0.88278 0.86723 0.94893 0.90073 0.83892 0.93691 0.91114 0.90604 0.92144 0.88663 0.89322 0.89268 0.92191 0.88906 0.91603 0.90179 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.16 14.32 29.02 0.42 -0.74 16 2 C -0.15 -1.02 9.78 -36.03 -0.35 -1.37 16 3 C 0.08 0.61 5.92 -4.97 -0.03 0.58 16 4 N -0.68 -5.61 6.30 -107.78 -0.68 -6.29 16 5 C 0.09 0.78 2.46 -67.52 -0.17 0.62 16 6 C -0.12 -1.24 5.62 -26.45 -0.15 -1.39 16 7 C 0.11 1.38 6.42 -3.71 -0.02 1.36 16 8 N -0.62 -8.87 2.97 -172.77 -0.51 -9.38 16 9 C 0.54 10.32 7.72 -10.99 -0.08 10.24 16 10 O -0.52 -11.99 15.27 5.56 0.08 -11.90 16 11 C -0.15 -3.07 4.50 36.00 0.16 -2.91 16 12 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 13 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 14 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 15 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 17 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 22 C -0.14 -1.23 5.36 -26.62 -0.14 -1.37 16 23 H 0.09 0.52 7.84 -52.48 -0.41 0.11 16 24 H 0.10 0.51 8.06 -52.49 -0.42 0.08 16 25 H 0.11 0.81 8.06 -52.48 -0.42 0.39 16 26 H 0.03 0.23 7.71 -51.93 -0.40 -0.17 16 27 H 0.08 0.61 7.42 -51.93 -0.39 0.23 16 28 H 0.34 2.53 8.32 -39.29 -0.33 2.20 16 29 H 0.05 0.38 7.80 -51.93 -0.40 -0.02 16 30 H 0.07 0.64 7.43 -51.93 -0.39 0.26 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.36 7.00 -51.93 -0.36 1.00 16 34 H 0.09 1.67 7.94 -51.92 -0.41 1.26 16 35 H 0.09 1.69 7.69 -51.91 -0.40 1.29 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.51 8.10 -51.92 -0.42 0.09 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -33.50 340.63 -8.97 -42.47 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.30 Total: -0.26 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.20 Total: -6.76 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -0.46 Total: -41.17 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.50 -8.97 -42.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199388485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.421 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds