Wall clock time and date at job start Tue Mar 31 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00206 * 2 1 4 4 N 1.46907 * 109.46998 * 125.00080 * 3 2 1 5 5 C 1.46900 * 110.99928 * 179.97438 * 4 3 2 6 6 C 1.53346 * 109.42051 * 275.13331 * 5 4 3 7 7 C 1.53195 * 109.14901 * 178.67519 * 6 5 4 8 8 N 1.46919 * 108.89273 * 54.57640 * 7 6 5 9 9 C 1.34778 * 120.63255 * 126.34238 * 8 7 6 10 10 O 1.21279 * 120.00169 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00023 * 179.97438 * 9 8 7 12 12 S 1.81004 * 109.47124 * 179.97438 * 11 9 8 13 13 C 1.76202 * 100.00170 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99808 * 0.02562 * 13 12 11 15 15 C 1.38802 * 119.99850 * 179.97438 * 13 12 11 16 16 N 1.31629 * 120.00032 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99655 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47281 * 89.99944 * 17 15 13 19 19 H 1.48503 * 109.47201 * 209.99866 * 17 15 13 20 20 H 1.48500 * 109.47189 * 329.99935 * 17 15 13 21 21 C 1.46933 * 118.74003 * 306.32349 * 8 7 6 22 22 C 1.53034 * 109.45742 * 155.00274 * 5 4 3 23 23 H 1.08003 * 120.00309 * 359.97438 * 1 2 3 24 24 H 1.07998 * 119.99935 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99568 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.47187 * 5.00775 * 3 2 1 27 27 H 1.08994 * 109.47256 * 245.00333 * 3 2 1 28 28 H 1.00900 * 111.00005 * 303.95706 * 4 3 2 29 29 H 1.09001 * 109.45925 * 35.03526 * 5 4 3 30 30 H 1.08997 * 109.68637 * 58.70728 * 6 5 4 31 31 H 1.09002 * 109.47277 * 298.50984 * 6 5 4 32 32 H 1.09002 * 109.58720 * 294.71670 * 7 6 5 33 33 H 1.08996 * 109.58651 * 174.43567 * 7 6 5 34 34 H 1.09001 * 109.47488 * 299.99559 * 11 9 8 35 35 H 1.09001 * 109.47269 * 59.99982 * 11 9 8 36 36 H 0.96996 * 119.99581 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.58580 * 173.39910 * 21 8 7 38 38 H 1.09006 * 109.57831 * 293.67403 * 21 8 7 39 39 H 1.08994 * 109.50232 * 61.43691 * 22 5 4 40 40 H 1.09007 * 109.52628 * 301.35352 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9964 1.3318 1.1346 5 6 3.7506 2.5921 1.1663 6 6 4.9714 2.4790 0.2454 7 6 5.7348 3.8071 0.2575 8 7 6.0559 4.1586 1.6474 9 6 7.3244 4.4326 2.0110 10 8 8.2139 4.3900 1.1877 11 6 7.6376 4.7921 3.4406 12 16 9.4130 5.1010 3.6100 13 6 9.4938 5.4883 5.3270 14 1 8.5946 5.4808 5.9251 15 6 10.7133 5.8020 5.9110 16 7 11.8093 5.8106 5.1821 17 14 10.7990 6.2119 7.7314 18 1 11.0285 4.9676 8.5088 19 1 11.9162 7.1598 7.9733 20 1 9.5204 6.8342 8.1594 21 6 4.9677 4.2061 2.6336 22 6 4.2116 2.8743 2.5980 23 1 -0.5401 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8499 -0.9354 -0.0004 26 1 1.3586 2.1316 0.0897 27 1 2.6212 1.4026 -0.9313 28 1 2.5108 1.1786 2.0057 29 1 3.1120 3.4061 0.8234 30 1 4.6456 2.2559 -0.7706 31 1 5.6232 1.6815 0.6023 32 1 5.1157 4.5885 -0.1833 33 1 6.6562 3.7042 -0.3156 34 1 7.0843 5.6889 3.7193 35 1 7.3484 3.9690 4.0939 36 1 12.6615 6.0295 5.5903 37 1 5.3831 4.3641 3.6288 38 1 4.2874 5.0217 2.3879 39 1 4.8703 2.0730 2.9328 40 1 3.3441 2.9308 3.2557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199388485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:19 Heat of formation + Delta-G solvation = -41.022947 kcal Electronic energy + Delta-G solvation = -19767.656966 eV Core-core repulsion = 16707.819165 eV Total energy + Delta-G solvation = -3059.837800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19610 -39.07071 -36.93937 -34.58891 -34.49744 -32.70535 -31.56423 -30.16215 -27.67884 -26.58750 -24.52444 -24.03147 -21.84065 -20.78274 -20.22778 -19.47642 -18.18239 -17.20082 -16.88613 -16.78950 -16.67348 -16.19564 -15.88389 -15.30132 -15.01337 -14.89277 -14.71673 -14.46803 -14.02634 -13.94018 -13.60159 -13.37194 -13.17149 -13.11190 -12.88795 -12.60519 -12.50442 -12.22782 -11.98338 -11.71720 -11.58278 -11.55822 -11.14037 -10.86636 -10.33351 -10.25821 -9.71273 -9.38628 -8.67582 -8.34244 -6.12874 1.25790 1.35597 1.43049 1.46287 1.56637 1.57540 2.10854 2.27733 2.99828 3.18439 3.26043 3.64113 3.71611 3.91456 4.07901 4.13384 4.19820 4.24592 4.26828 4.32680 4.42948 4.49445 4.57490 4.67111 4.72942 4.78712 4.82398 4.85807 5.01467 5.06778 5.14780 5.33900 5.41912 5.57327 5.74603 5.78048 6.10781 6.20041 6.28685 6.49472 7.06743 7.14143 8.75070 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.035230 B = 0.002934 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.580662 B = 9540.316933 C =10085.039688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.086 3.914 4 N -0.692 5.692 5 C 0.095 3.905 6 C -0.112 4.112 7 C 0.110 3.890 8 N -0.607 5.607 9 C 0.532 3.468 10 O -0.568 6.568 11 C -0.122 4.122 12 S -0.155 6.155 13 C -0.544 4.544 14 H 0.084 0.916 15 C 0.012 3.988 16 N -0.912 5.912 17 Si 1.000 3.000 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.257 1.257 21 C 0.103 3.897 22 C -0.130 4.130 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.349 0.651 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.925 -7.547 -6.637 27.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.180 4.180 3 C -0.042 4.042 4 N -0.324 5.324 5 C -0.014 4.014 6 C -0.151 4.151 7 C -0.012 4.012 8 N -0.341 5.341 9 C 0.319 3.681 10 O -0.447 6.447 11 C -0.273 4.273 12 S 0.072 5.928 13 C -0.692 4.692 14 H 0.102 0.898 15 C -0.193 4.193 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.180 1.180 21 C -0.020 4.020 22 C -0.168 4.168 23 H 0.120 0.880 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.169 0.831 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.970 -7.926 -8.204 26.546 hybrid contribution -0.952 0.741 1.944 2.288 sum -24.923 -7.185 -6.261 26.683 Atomic orbital electron populations 1.24049 0.95696 1.02705 0.99704 1.22924 0.95885 0.98509 1.00725 1.21117 0.93485 0.94714 0.94913 1.60367 1.29925 1.35106 1.06972 1.21477 0.94123 0.90665 0.95179 1.21883 0.96549 0.95737 1.00919 1.21672 1.00316 0.97433 0.81804 1.48128 1.06273 1.68553 1.11149 1.20160 0.82571 0.75960 0.89378 1.90669 1.46999 1.53271 1.53790 1.23362 1.01944 1.05540 0.96484 1.85621 1.03070 1.90517 1.13593 1.23186 0.97441 1.54389 0.94164 0.89820 1.26158 0.94103 0.94378 1.04652 1.70191 0.99463 1.46711 1.38463 0.84934 0.78540 0.78377 0.76003 1.19311 1.20344 1.18043 1.22000 0.88532 0.98750 0.92668 1.22058 1.01190 0.96872 0.96689 0.87988 0.87496 0.87388 0.93992 0.90568 0.83124 0.92188 0.89702 0.93022 0.89547 0.91354 0.87310 0.87534 0.92011 0.89053 0.88804 0.91969 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 14.32 67.78 0.97 -0.82 16 2 C -0.16 -1.93 9.78 25.65 0.25 -1.68 16 3 C 0.09 1.05 5.92 85.55 0.51 1.56 16 4 N -0.69 -9.66 6.30 -494.90 -3.12 -12.77 16 5 C 0.10 1.40 2.46 45.04 0.11 1.51 16 6 C -0.11 -2.16 5.62 30.78 0.17 -1.98 16 7 C 0.11 2.61 6.42 86.36 0.55 3.16 16 8 N -0.61 -16.62 2.97 -818.91 -2.43 -19.06 16 9 C 0.53 20.65 7.72 87.66 0.68 21.33 16 10 O -0.57 -27.50 15.27 -3.03 -0.05 -27.54 16 11 C -0.12 -4.97 4.50 71.24 0.32 -4.65 16 12 S -0.16 -8.77 20.57 -56.49 -1.16 -9.94 16 13 C -0.54 -31.20 9.50 67.96 0.65 -30.55 16 14 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 15 C 0.01 0.67 5.49 84.86 0.47 1.14 16 16 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 17 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 21 C 0.10 1.91 6.34 86.36 0.55 2.46 16 22 C -0.13 -1.94 5.36 30.67 0.16 -1.77 16 23 H 0.10 0.83 7.84 -2.91 -0.02 0.81 16 24 H 0.11 0.86 8.06 -2.91 -0.02 0.83 16 25 H 0.11 1.41 8.06 -2.91 -0.02 1.39 16 26 H 0.04 0.44 7.71 -2.38 -0.02 0.43 16 27 H 0.08 0.99 7.42 -2.39 -0.02 0.98 16 28 H 0.35 4.16 8.32 -89.69 -0.75 3.42 16 29 H 0.06 0.75 7.80 -2.39 -0.02 0.74 16 30 H 0.08 1.41 7.43 -2.39 -0.02 1.39 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 2.01 7.00 -2.39 -0.02 2.00 16 34 H 0.11 3.96 7.94 -2.39 -0.02 3.94 16 35 H 0.11 3.93 7.69 -2.40 -0.02 3.91 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.09 1.75 5.93 -2.39 -0.01 1.74 16 38 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.10 1.00 8.10 -2.38 -0.02 0.98 16 Total: -1.00 -75.69 340.63 1.21 -74.47 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.27 Total: 15.66 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.39 Total: -10.30 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -5.27 Total: -88.00 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.94 kcal Total: -75.69 1.21 -74.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199388485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.448 kcal (2) G-P(sol) polarization free energy of solvation -75.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds