Wall clock time and date at job start Tue Mar 31 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47398 * 2 1 4 4 O 1.42901 * 109.47207 * 239.99962 * 2 1 3 5 5 C 1.42895 * 113.99948 * 89.99876 * 4 2 1 6 6 C 1.53006 * 109.47036 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47131 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47188 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00218 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00046 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99944 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00270 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46805 * 90.00351 * 13 11 9 15 15 H 1.48493 * 109.47486 * 210.00418 * 13 11 9 16 16 H 1.48500 * 109.46799 * 330.00563 * 13 11 9 17 17 C 1.50705 * 109.46765 * 120.00195 * 2 1 3 18 18 C 1.38413 * 120.02782 * 74.72274 * 17 2 1 19 19 F 1.35096 * 120.01465 * 0.02562 * 18 17 2 20 20 C 1.38473 * 119.97350 * 179.79094 * 18 17 2 21 21 C 1.38210 * 120.02619 * 0.48369 * 20 18 17 22 22 C 1.38209 * 120.04681 * 359.74750 * 21 20 18 23 23 C 1.38423 * 120.01917 * 255.00026 * 17 2 1 24 24 F 1.35099 * 120.01375 * 359.97438 * 23 17 2 25 25 H 1.09004 * 109.46875 * 60.00112 * 1 2 3 26 26 H 1.09003 * 109.46813 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47032 * 300.00334 * 1 2 3 28 28 H 1.09001 * 109.46798 * 60.00190 * 5 4 2 29 29 H 1.08993 * 109.47318 * 299.99656 * 5 4 2 30 30 H 1.09001 * 109.46801 * 300.00369 * 6 5 4 31 31 H 1.09001 * 109.46998 * 59.99965 * 6 5 4 32 32 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 33 33 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 34 34 H 1.09000 * 109.47380 * 300.00763 * 8 7 6 35 35 H 1.09001 * 109.46997 * 60.00426 * 8 7 6 36 36 H 0.97007 * 119.99867 * 179.97438 * 12 11 9 37 37 H 1.08005 * 119.98981 * 180.23302 * 20 18 17 38 38 H 1.07995 * 119.97690 * 179.76838 * 21 20 18 39 39 H 1.08005 * 119.98267 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2940 6 6 2.7092 -0.6407 -3.4788 7 6 2.9172 0.2765 -4.6856 8 6 3.4268 -0.5469 -5.8701 9 6 3.6311 0.3564 -7.0590 10 1 3.4191 1.4122 -6.9777 11 6 4.0897 -0.1649 -8.2501 12 7 4.3484 -1.4506 -8.3490 13 14 4.3437 0.9548 -9.7236 14 1 5.7305 1.4857 -9.7086 15 1 4.1217 0.1855 -10.9741 16 1 3.3808 2.0835 -9.6593 17 6 2.0323 -0.7105 1.2305 18 6 1.9655 -2.0908 1.3091 19 9 1.4503 -2.8020 0.2825 20 6 2.4313 -2.7427 2.4385 21 6 2.9536 -2.0151 3.4911 22 6 3.0164 -0.6365 3.4156 23 6 2.5556 0.0173 2.2853 24 9 2.6168 1.3649 2.2120 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.9320 0.9513 -2.0449 29 1 1.2539 0.6545 -2.5589 30 1 3.6556 -1.1121 -3.2137 31 1 1.9776 -1.4094 -3.7280 32 1 1.9711 0.7482 -4.9508 33 1 3.6490 1.0449 -4.4361 34 1 4.3730 -1.0184 -5.6046 35 1 2.6954 -1.3155 -6.1198 36 1 4.6707 -1.8175 -9.1872 37 1 2.3827 -3.8200 2.4986 38 1 3.3132 -2.5242 4.3731 39 1 3.4244 -0.0689 4.2389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224691651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:22 Heat of formation + Delta-G solvation = -136.595425 kcal Electronic energy + Delta-G solvation = -21672.403671 eV Core-core repulsion = 18022.288399 eV Total energy + Delta-G solvation = -3650.115271 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.133 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.34042 -49.01783 -39.44053 -38.01389 -34.82379 -33.12320 -32.00370 -30.60657 -29.54801 -28.51066 -24.97036 -24.14239 -23.15290 -21.68208 -21.45259 -19.99358 -18.39921 -17.72847 -16.74885 -16.27034 -16.15789 -15.93165 -15.74526 -15.58158 -15.42257 -14.87446 -14.60756 -14.41669 -14.00397 -13.22553 -13.00077 -12.83955 -12.65237 -12.35088 -12.25246 -12.23428 -11.97171 -11.71572 -11.28361 -11.08568 -10.87534 -10.69477 -10.50983 -10.37368 -9.66718 -9.52892 -9.31965 -9.19347 -9.04923 -9.00426 -8.31038 -5.96036 -3.98435 0.60120 0.66981 2.99443 3.34187 3.40094 3.43511 3.53136 3.64604 4.11283 4.20508 4.45389 4.48026 4.53394 4.79010 4.93087 4.99812 5.33530 5.38292 5.40089 5.44511 5.46627 5.54496 5.56708 5.68122 5.76672 5.79227 5.79872 5.98591 6.14830 6.19153 6.43349 6.51093 6.81787 6.95359 7.12148 7.34162 7.72670 7.87926 8.04836 8.46982 9.08931 9.65294 11.15351 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.002748 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.339860 B =10186.234655 C =10482.422323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.127 3.873 3 H 0.076 0.924 4 O -0.372 6.372 5 C 0.062 3.938 6 C -0.115 4.115 7 C -0.107 4.107 8 C 0.021 3.979 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.159 4.159 18 C 0.160 3.840 19 F -0.114 7.114 20 C -0.171 4.171 21 C -0.061 4.061 22 C -0.169 4.169 23 C 0.136 3.864 24 F -0.130 7.130 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 0.286 27.249 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.094 0.906 4 O -0.291 6.291 5 C -0.014 4.014 6 C -0.153 4.153 7 C -0.145 4.145 8 C -0.016 4.016 9 C -0.559 4.559 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.161 4.161 18 C 0.140 3.860 19 F -0.092 7.092 20 C -0.190 4.190 21 C -0.079 4.079 22 C -0.188 4.188 23 C 0.117 3.883 24 F -0.108 7.108 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.706 -0.015 27.057 27.653 hybrid contribution 0.100 0.944 -1.061 1.423 sum -5.606 0.928 25.996 26.610 Atomic orbital electron populations 1.22261 0.94487 1.03381 1.02554 1.20628 0.94076 0.95193 0.83273 0.90623 1.88019 1.86300 1.35365 1.19463 1.22784 0.99227 0.93292 0.86056 1.21632 1.01472 0.99090 0.93070 1.21577 1.00204 0.98043 0.94673 1.19087 0.96311 0.95084 0.91089 1.21274 1.43847 0.94683 0.96083 0.92730 1.25037 0.95643 0.95009 0.98857 1.69975 1.45695 1.11651 1.26187 0.86599 0.78480 0.80685 0.82264 1.20686 1.21226 1.19905 1.19899 1.05597 0.93348 0.97265 1.17176 0.95463 0.88107 0.85254 1.91599 1.83442 1.77383 1.56762 1.21289 1.02776 1.01656 0.93252 1.20859 0.96147 0.92732 0.98156 1.21155 1.04206 0.95499 0.97951 1.17163 0.99347 0.77110 0.94699 1.91522 1.94077 1.28751 1.96444 0.91286 0.91361 0.91705 0.93551 0.93413 0.91729 0.91589 0.93319 0.93362 0.96547 0.96515 0.93028 0.83862 0.83884 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 9.46 37.16 0.35 -1.50 16 2 C 0.13 1.60 2.70 -27.88 -0.08 1.53 16 3 H 0.08 0.91 6.91 -51.93 -0.36 0.56 16 4 O -0.37 -5.80 8.72 -35.23 -0.31 -6.11 16 5 C 0.06 0.97 5.75 37.16 0.21 1.18 16 6 C -0.12 -2.12 5.58 -26.73 -0.15 -2.27 16 7 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 8 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 9 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 13 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 C -0.16 -1.87 4.98 -104.49 -0.52 -2.39 16 18 C 0.16 1.84 6.99 -39.43 -0.28 1.56 16 19 F -0.11 -1.56 15.40 2.25 0.03 -1.52 16 20 C -0.17 -1.43 10.02 -39.50 -0.40 -1.83 16 21 C -0.06 -0.40 10.04 -39.60 -0.40 -0.80 16 22 C -0.17 -1.28 10.02 -39.51 -0.40 -1.68 16 23 C 0.14 1.39 7.25 -39.43 -0.29 1.11 16 24 F -0.13 -1.40 16.27 2.25 0.04 -1.36 16 25 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 26 H 0.07 0.78 7.61 -51.93 -0.40 0.39 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.05 0.69 7.87 -51.93 -0.41 0.28 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 37 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 38 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -32.12 337.59 -7.81 -39.93 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -5.76 Total: -5.23 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -2.62 Total: -20.99 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.74 Total: -26.84 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.31 Total: -6.11 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.07 Total: -2.88 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.12 -7.81 -39.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224691651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.666 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds