Wall clock time and date at job start Tue Mar 31 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47398 * 2 1 4 4 O 1.42901 * 109.47207 * 239.99962 * 2 1 3 5 5 C 1.42895 * 113.99948 * 89.99876 * 4 2 1 6 6 C 1.53006 * 109.47036 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47131 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47188 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00218 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00046 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99944 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00270 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46805 * 90.00351 * 13 11 9 15 15 H 1.48493 * 109.47486 * 210.00418 * 13 11 9 16 16 H 1.48500 * 109.46799 * 330.00563 * 13 11 9 17 17 C 1.50705 * 109.46765 * 120.00195 * 2 1 3 18 18 C 1.38413 * 120.02782 * 74.72274 * 17 2 1 19 19 F 1.35096 * 120.01465 * 0.02562 * 18 17 2 20 20 C 1.38473 * 119.97350 * 179.79094 * 18 17 2 21 21 C 1.38210 * 120.02619 * 0.48369 * 20 18 17 22 22 C 1.38209 * 120.04681 * 359.74750 * 21 20 18 23 23 C 1.38423 * 120.01917 * 255.00026 * 17 2 1 24 24 F 1.35099 * 120.01375 * 359.97438 * 23 17 2 25 25 H 1.09004 * 109.46875 * 60.00112 * 1 2 3 26 26 H 1.09003 * 109.46813 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47032 * 300.00334 * 1 2 3 28 28 H 1.09001 * 109.46798 * 60.00190 * 5 4 2 29 29 H 1.08993 * 109.47318 * 299.99656 * 5 4 2 30 30 H 1.09001 * 109.46801 * 300.00369 * 6 5 4 31 31 H 1.09001 * 109.46998 * 59.99965 * 6 5 4 32 32 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 33 33 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 34 34 H 1.09000 * 109.47380 * 300.00763 * 8 7 6 35 35 H 1.09001 * 109.46997 * 60.00426 * 8 7 6 36 36 H 0.97007 * 119.99867 * 179.97438 * 12 11 9 37 37 H 1.08005 * 119.98981 * 180.23302 * 20 18 17 38 38 H 1.07995 * 119.97690 * 179.76838 * 21 20 18 39 39 H 1.08005 * 119.98267 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2940 6 6 2.7092 -0.6407 -3.4788 7 6 2.9172 0.2765 -4.6856 8 6 3.4268 -0.5469 -5.8701 9 6 3.6311 0.3564 -7.0590 10 1 3.4191 1.4122 -6.9777 11 6 4.0897 -0.1649 -8.2501 12 7 4.3484 -1.4506 -8.3490 13 14 4.3437 0.9548 -9.7236 14 1 5.7305 1.4857 -9.7086 15 1 4.1217 0.1855 -10.9741 16 1 3.3808 2.0835 -9.6593 17 6 2.0323 -0.7105 1.2305 18 6 1.9655 -2.0908 1.3091 19 9 1.4503 -2.8020 0.2825 20 6 2.4313 -2.7427 2.4385 21 6 2.9536 -2.0151 3.4911 22 6 3.0164 -0.6365 3.4156 23 6 2.5556 0.0173 2.2853 24 9 2.6168 1.3649 2.2120 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.9320 0.9513 -2.0449 29 1 1.2539 0.6545 -2.5589 30 1 3.6556 -1.1121 -3.2137 31 1 1.9776 -1.4094 -3.7280 32 1 1.9711 0.7482 -4.9508 33 1 3.6490 1.0449 -4.4361 34 1 4.3730 -1.0184 -5.6046 35 1 2.6954 -1.3155 -6.1198 36 1 4.6707 -1.8175 -9.1872 37 1 2.3827 -3.8200 2.4986 38 1 3.3132 -2.5242 4.3731 39 1 3.4244 -0.0689 4.2389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224691651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:21 Heat of formation + Delta-G solvation = -153.594523 kcal Electronic energy + Delta-G solvation = -21673.140807 eV Core-core repulsion = 18022.288399 eV Total energy + Delta-G solvation = -3650.852408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.133 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.09968 -49.91144 -40.25499 -39.01679 -36.55900 -34.67085 -33.52965 -31.27594 -30.57690 -30.10297 -26.72588 -25.08645 -23.95936 -23.30834 -22.37011 -21.70820 -19.15666 -18.59835 -18.45773 -17.53270 -17.13578 -16.92391 -16.79343 -16.56815 -16.46243 -16.29152 -15.69887 -15.45588 -15.34361 -14.55256 -14.25962 -14.04091 -13.72709 -13.66224 -13.42050 -13.24171 -12.97446 -12.91219 -12.81819 -12.64296 -12.38847 -12.32411 -12.17637 -11.72816 -11.49349 -11.35404 -11.11489 -10.68032 -10.56591 -9.94937 -9.75047 -8.20855 -6.32822 -0.08516 -0.02160 1.39241 1.41342 1.52512 2.29332 2.40249 2.57808 2.88778 3.11936 3.39956 3.43047 3.71400 3.86448 3.98818 4.04915 4.13069 4.20724 4.23351 4.40057 4.46769 4.56871 4.64983 4.71537 4.80679 4.84146 4.89230 5.01130 5.06419 5.09948 5.15320 5.19485 5.23045 5.25820 5.51311 5.73064 5.76850 5.84097 6.18017 6.23250 6.84504 7.36630 8.91359 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.002748 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.339860 B =10186.234655 C =10482.422323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.120 3.880 3 H 0.079 0.921 4 O -0.392 6.392 5 C 0.071 3.929 6 C -0.107 4.107 7 C -0.094 4.094 8 C 0.023 3.977 9 C -0.545 4.545 10 H 0.063 0.937 11 C -0.004 4.004 12 N -0.935 5.935 13 Si 0.969 3.031 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.262 1.262 17 C -0.180 4.180 18 C 0.127 3.873 19 F -0.137 7.137 20 C -0.167 4.167 21 C -0.047 4.047 22 C -0.159 4.159 23 C 0.120 3.880 24 F -0.137 7.137 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.056 0.944 34 H -0.011 1.011 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.163 0.837 38 H 0.186 0.814 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 1.474 29.031 29.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.097 0.903 4 O -0.312 6.312 5 C -0.005 4.005 6 C -0.145 4.145 7 C -0.131 4.131 8 C -0.015 4.015 9 C -0.583 4.583 10 H 0.081 0.919 11 C -0.202 4.202 12 N -0.576 5.576 13 Si 0.793 3.207 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.186 1.186 17 C -0.182 4.182 18 C 0.107 3.893 19 F -0.115 7.115 20 C -0.186 4.186 21 C -0.064 4.064 22 C -0.177 4.177 23 C 0.100 3.900 24 F -0.116 7.116 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.073 0.927 37 H 0.180 0.820 38 H 0.203 0.797 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.512 1.183 28.860 29.406 hybrid contribution 0.063 0.510 -1.503 1.589 sum -5.449 1.693 27.357 27.946 Atomic orbital electron populations 1.22220 0.93487 1.02984 1.03460 1.20815 0.94992 0.95282 0.82668 0.90330 1.87981 1.86755 1.36170 1.20269 1.22577 1.00055 0.92639 0.85278 1.21439 1.00869 0.98667 0.93514 1.21352 1.00490 0.97713 0.93558 1.19014 0.94410 0.94906 0.93130 1.21727 1.44052 0.95368 0.97130 0.91909 1.26056 0.95058 0.96652 1.02385 1.70118 1.46409 1.13772 1.27275 0.85394 0.78909 0.78627 0.77796 1.19667 1.20693 1.18562 1.19928 1.07094 0.93736 0.97453 1.17572 0.97351 0.88312 0.86037 1.91534 1.84139 1.77807 1.58014 1.21627 1.01617 1.02847 0.92464 1.21359 0.94167 0.92313 0.98587 1.21571 1.02486 0.96183 0.97472 1.17402 1.00274 0.76893 0.95421 1.91499 1.94242 1.29262 1.96547 0.91152 0.92371 0.89945 0.92523 0.92027 0.92804 0.92567 0.92373 0.92503 0.99249 0.99190 0.92740 0.81966 0.79708 0.81088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.46 71.98 0.68 -2.89 16 2 C 0.12 3.05 2.70 29.85 0.08 3.13 16 3 H 0.08 1.89 6.91 -2.39 -0.02 1.87 16 4 O -0.39 -12.42 8.72 -148.98 -1.30 -13.72 16 5 C 0.07 2.18 5.75 71.98 0.41 2.59 16 6 C -0.11 -4.04 5.58 30.60 0.17 -3.87 16 7 C -0.09 -4.01 5.15 30.59 0.16 -3.85 16 8 C 0.02 1.25 4.97 29.85 0.15 1.39 16 9 C -0.54 -32.05 9.11 25.60 0.23 -31.81 16 10 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 11 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 12 N -0.94 -58.76 13.29 21.45 0.28 -58.47 16 13 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 17 C -0.18 -4.19 4.98 -19.78 -0.10 -4.29 16 18 C 0.13 2.90 6.99 22.37 0.16 3.06 16 19 F -0.14 -3.89 15.40 44.97 0.69 -3.20 16 20 C -0.17 -2.47 10.02 22.32 0.22 -2.25 16 21 C -0.05 -0.44 10.04 22.26 0.22 -0.22 16 22 C -0.16 -1.92 10.02 22.32 0.22 -1.70 16 23 C 0.12 2.29 7.25 22.37 0.16 2.45 16 24 F -0.14 -2.81 16.27 44.97 0.73 -2.08 16 25 H 0.07 1.47 7.87 -2.38 -0.02 1.45 16 26 H 0.06 1.37 7.61 -2.39 -0.02 1.35 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.63 8.08 -2.39 -0.02 1.61 16 29 H 0.06 1.72 7.87 -2.39 -0.02 1.70 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 34 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 37 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 39 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -71.30 337.59 6.70 -64.60 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 1.03 Total: 3.71 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 3.24 Total: -38.04 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.28 Total: -58.47 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -1.30 Total: -13.72 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 1.42 Total: -5.28 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -71.30 6.70 -64.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224691651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.998 kcal (2) G-P(sol) polarization free energy of solvation -71.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds