Wall clock time and date at job start Tue Mar 31 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46976 * 2 1 4 4 C 1.52997 * 109.47394 * 239.99711 * 2 1 3 5 5 O 1.45199 * 109.46977 * 119.99648 * 2 1 3 6 6 C 1.34644 * 117.00135 * 60.00222 * 5 2 1 7 7 O 1.21516 * 119.99604 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00016 * 179.72609 * 6 5 2 9 9 C 1.47426 * 125.64885 * 0.02562 * 8 6 5 10 10 C 1.54912 * 104.83349 * 204.09503 * 9 8 6 11 11 C 1.55165 * 101.58047 * 322.99211 * 10 9 8 12 12 C 1.47020 * 125.64653 * 179.71811 * 8 6 5 13 13 H 1.08997 * 109.88501 * 59.55627 * 12 8 6 14 14 C 1.50701 * 109.88411 * 298.38960 * 12 8 6 15 15 O 1.21291 * 119.99829 * 341.46071 * 14 12 8 16 16 N 1.34774 * 120.00026 * 161.45234 * 14 12 8 17 17 C 1.37096 * 119.99575 * 180.02562 * 16 14 12 18 18 H 1.07997 * 120.00491 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99822 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99802 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00169 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47307 * 59.99247 * 21 19 17 23 23 H 1.48493 * 109.47371 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46845 * 299.99806 * 21 19 17 25 25 H 1.08994 * 109.46868 * 300.00107 * 1 2 3 26 26 H 1.09004 * 109.46642 * 60.00445 * 1 2 3 27 27 H 1.08996 * 109.46553 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46752 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46600 * 299.99846 * 3 2 1 30 30 H 1.09002 * 109.47255 * 59.99951 * 3 2 1 31 31 H 1.09007 * 109.47187 * 300.00347 * 4 2 1 32 32 H 1.08999 * 109.47137 * 59.99569 * 4 2 1 33 33 H 1.08991 * 109.47351 * 180.02562 * 4 2 1 34 34 H 1.08996 * 110.37048 * 322.93274 * 9 8 6 35 35 H 1.09005 * 110.36452 * 85.25812 * 9 8 6 36 36 H 1.08997 * 111.00159 * 81.06357 * 10 9 8 37 37 H 1.09000 * 111.00317 * 204.88366 * 10 9 8 38 38 H 1.09004 * 110.71799 * 153.86350 * 11 10 9 39 39 H 1.08999 * 110.72046 * 276.96504 * 11 10 9 40 40 H 0.96995 * 120.00334 * 0.02562 * 16 14 12 41 41 H 0.97000 * 119.99645 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3385 7 8 0.9509 -2.5095 0.5041 8 7 2.0722 -2.6671 2.4143 9 6 2.9266 -2.1432 3.4955 10 6 3.6102 -3.3940 4.1020 11 6 2.4696 -4.4428 4.0203 12 6 1.7488 -4.0710 2.7072 13 1 2.1034 -4.7097 1.8982 14 6 0.2595 -4.2299 2.8741 15 8 -0.4327 -3.2592 3.0971 16 7 -0.3032 -5.4506 2.7754 17 6 -1.6581 -5.5949 2.9268 18 1 -2.2746 -4.7306 3.1247 19 6 -2.2383 -6.8535 2.8256 20 7 -1.4883 -7.9052 2.5843 21 14 -4.0845 -7.0502 3.0311 22 1 -4.7860 -6.2475 1.9972 23 1 -4.4498 -8.4815 2.8795 24 1 -4.4854 -6.5779 4.3808 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6768 -0.2076 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 3.6743 -1.4609 3.0913 35 1 2.3199 -1.6399 4.2483 36 1 4.4667 -3.7008 3.5018 37 1 3.9042 -3.2156 5.1364 38 1 2.8771 -5.4524 3.9669 39 1 1.7944 -4.3454 4.8705 40 1 0.2503 -6.2269 2.5973 41 1 -1.8934 -8.7838 2.5133 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013676554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:11 Heat of formation + Delta-G solvation = -114.993484 kcal Electronic energy + Delta-G solvation = -23830.901509 eV Core-core repulsion = 20325.103235 eV Total energy + Delta-G solvation = -3505.798274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52431 -39.02681 -37.01384 -36.04502 -33.87716 -33.80196 -31.41913 -31.00590 -29.15453 -27.34313 -27.19955 -25.03921 -23.96764 -21.63705 -21.27445 -19.63540 -18.69153 -17.96282 -17.24460 -16.84439 -16.21899 -15.45708 -15.13671 -14.69424 -14.30821 -14.11887 -13.93344 -13.56956 -13.49548 -12.91248 -12.87998 -12.55506 -12.43130 -12.30992 -11.94714 -11.76564 -11.66663 -11.53202 -11.31052 -11.17354 -11.13696 -11.06472 -10.96322 -10.68552 -10.40367 -10.17207 -10.11163 -9.61442 -9.45043 -8.80704 -7.98987 -7.91534 -6.36782 -3.76828 2.37092 3.23419 3.28730 3.32559 3.36385 3.86270 4.15039 4.26383 4.65642 4.82937 4.84648 4.86175 4.94892 5.02806 5.13989 5.33921 5.47140 5.49535 5.58397 5.63062 5.74001 5.74324 5.78048 5.83865 5.85077 5.99451 6.01514 6.05234 6.05925 6.21024 6.38379 6.42941 6.56400 6.63213 6.78862 7.59788 7.87757 8.09609 8.64780 8.81320 9.22612 9.58210 10.09823 10.80825 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.005144 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.252505 B = 5442.216279 C = 6471.059559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.366 6.366 6 C 0.673 3.327 7 O -0.552 6.552 8 N -0.581 5.581 9 C 0.107 3.893 10 C -0.131 4.131 11 C -0.119 4.119 12 C 0.144 3.856 13 H 0.087 0.913 14 C 0.440 3.560 15 O -0.582 6.582 16 N -0.557 5.557 17 C -0.296 4.296 18 H 0.101 0.899 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.274 1.274 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.392 0.608 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.475 11.346 -1.387 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.281 6.281 6 C 0.428 3.572 7 O -0.440 6.440 8 N -0.322 5.322 9 C -0.016 4.016 10 C -0.169 4.169 11 C -0.158 4.158 12 C 0.038 3.962 13 H 0.104 0.896 14 C 0.224 3.776 15 O -0.466 6.466 16 N -0.193 5.193 17 C -0.425 4.425 18 H 0.119 0.881 19 C -0.178 4.178 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.199 1.199 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.225 0.775 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.678 11.741 -1.663 16.643 hybrid contribution -0.734 -0.625 -0.087 0.969 sum 10.943 11.115 -1.750 15.696 Atomic orbital electron populations 1.22503 0.93890 1.05698 1.01952 1.21983 0.94566 0.91193 0.82293 1.21830 1.01837 0.92925 1.02886 1.22512 1.01111 1.03864 0.96472 1.86244 1.71821 1.23870 1.46202 1.17290 0.78346 0.80087 0.81429 1.90923 1.39872 1.70164 1.43032 1.46636 1.52265 1.11843 1.21433 1.22279 0.93092 0.96549 0.89692 1.22783 0.97668 0.94790 1.01644 1.22630 0.96979 0.99787 0.96395 1.21369 0.95558 0.81010 0.98292 0.89557 1.19889 0.88504 0.84472 0.84690 1.90515 1.63144 1.38723 1.54228 1.41781 1.08457 1.06945 1.62086 1.19630 0.82736 0.94586 1.45594 0.88138 1.25237 1.00378 0.94896 0.97304 1.69603 1.36214 0.99278 1.49189 0.85930 0.82329 0.77002 0.79025 1.19934 1.20949 1.19950 0.92226 0.91626 0.88889 0.91760 0.90416 0.91587 0.89210 0.91436 0.92482 0.90434 0.91281 0.90468 0.89617 0.89109 0.89752 0.77472 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 8.37 37.16 0.31 -2.55 16 2 C 0.14 1.97 1.13 -90.62 -0.10 1.87 16 3 C -0.14 -1.43 8.85 37.16 0.33 -1.11 16 4 C -0.18 -2.47 8.37 37.16 0.31 -2.16 16 5 O -0.37 -6.28 9.42 -40.34 -0.38 -6.66 16 6 C 0.67 13.57 7.32 54.05 0.40 13.97 16 7 O -0.55 -12.77 11.71 -19.28 -0.23 -12.99 16 8 N -0.58 -10.72 2.75 -170.05 -0.47 -11.19 16 9 C 0.11 1.47 6.92 -2.53 -0.02 1.45 16 10 C -0.13 -1.44 7.09 -24.58 -0.17 -1.61 16 11 C -0.12 -1.71 6.47 -24.88 -0.16 -1.87 16 12 C 0.14 2.75 3.25 -68.10 -0.22 2.52 16 13 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 14 C 0.44 10.98 6.24 -10.99 -0.07 10.91 16 15 O -0.58 -16.76 15.72 5.55 0.09 -16.67 16 16 N -0.56 -14.68 5.29 -10.96 -0.06 -14.74 16 17 C -0.30 -8.54 9.68 -14.93 -0.14 -8.68 16 18 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 19 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 20 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 21 Si 0.93 21.64 29.55 -169.99 -5.02 16.62 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.84 5.88 -51.93 -0.31 1.54 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.51 5.88 -51.92 -0.31 1.20 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.32 7.84 -51.93 -0.41 0.91 16 40 H 0.39 9.83 7.90 -40.82 -0.32 9.50 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -34.79 336.72 -6.25 -41.04 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.34 Total: 10.46 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 0.36 Total: 13.29 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.20 Total: -50.15 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.52 Total: -36.32 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.79 -6.25 -41.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013676554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.958 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds