Wall clock time and date at job start Tue Mar 31 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46976 * 2 1 4 4 C 1.52997 * 109.47394 * 239.99711 * 2 1 3 5 5 O 1.45199 * 109.46977 * 119.99648 * 2 1 3 6 6 C 1.34644 * 117.00135 * 60.00222 * 5 2 1 7 7 O 1.21516 * 119.99604 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00016 * 179.72609 * 6 5 2 9 9 C 1.47426 * 125.64885 * 0.02562 * 8 6 5 10 10 C 1.54912 * 104.83349 * 204.09503 * 9 8 6 11 11 C 1.55165 * 101.58047 * 322.99211 * 10 9 8 12 12 C 1.47020 * 125.64653 * 179.71811 * 8 6 5 13 13 H 1.08997 * 109.88501 * 59.55627 * 12 8 6 14 14 C 1.50701 * 109.88411 * 298.38960 * 12 8 6 15 15 O 1.21291 * 119.99829 * 341.46071 * 14 12 8 16 16 N 1.34774 * 120.00026 * 161.45234 * 14 12 8 17 17 C 1.37096 * 119.99575 * 180.02562 * 16 14 12 18 18 H 1.07997 * 120.00491 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99822 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99802 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00169 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47307 * 59.99247 * 21 19 17 23 23 H 1.48493 * 109.47371 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46845 * 299.99806 * 21 19 17 25 25 H 1.08994 * 109.46868 * 300.00107 * 1 2 3 26 26 H 1.09004 * 109.46642 * 60.00445 * 1 2 3 27 27 H 1.08996 * 109.46553 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46752 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46600 * 299.99846 * 3 2 1 30 30 H 1.09002 * 109.47255 * 59.99951 * 3 2 1 31 31 H 1.09007 * 109.47187 * 300.00347 * 4 2 1 32 32 H 1.08999 * 109.47137 * 59.99569 * 4 2 1 33 33 H 1.08991 * 109.47351 * 180.02562 * 4 2 1 34 34 H 1.08996 * 110.37048 * 322.93274 * 9 8 6 35 35 H 1.09005 * 110.36452 * 85.25812 * 9 8 6 36 36 H 1.08997 * 111.00159 * 81.06357 * 10 9 8 37 37 H 1.09000 * 111.00317 * 204.88366 * 10 9 8 38 38 H 1.09004 * 110.71799 * 153.86350 * 11 10 9 39 39 H 1.08999 * 110.72046 * 276.96504 * 11 10 9 40 40 H 0.96995 * 120.00334 * 0.02562 * 16 14 12 41 41 H 0.97000 * 119.99645 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3385 7 8 0.9509 -2.5095 0.5041 8 7 2.0722 -2.6671 2.4143 9 6 2.9266 -2.1432 3.4955 10 6 3.6102 -3.3940 4.1020 11 6 2.4696 -4.4428 4.0203 12 6 1.7488 -4.0710 2.7072 13 1 2.1034 -4.7097 1.8982 14 6 0.2595 -4.2299 2.8741 15 8 -0.4327 -3.2592 3.0971 16 7 -0.3032 -5.4506 2.7754 17 6 -1.6581 -5.5949 2.9268 18 1 -2.2746 -4.7306 3.1247 19 6 -2.2383 -6.8535 2.8256 20 7 -1.4883 -7.9052 2.5843 21 14 -4.0845 -7.0502 3.0311 22 1 -4.7860 -6.2475 1.9972 23 1 -4.4498 -8.4815 2.8795 24 1 -4.4854 -6.5779 4.3808 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6768 -0.2076 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 3.6743 -1.4609 3.0913 35 1 2.3199 -1.6399 4.2483 36 1 4.4667 -3.7008 3.5018 37 1 3.9042 -3.2156 5.1364 38 1 2.8771 -5.4524 3.9669 39 1 1.7944 -4.3454 4.8705 40 1 0.2503 -6.2269 2.5973 41 1 -1.8934 -8.7838 2.5133 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013676554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:10 Heat of formation + Delta-G solvation = -139.908042 kcal Electronic energy + Delta-G solvation = -23831.981885 eV Core-core repulsion = 20325.103235 eV Total energy + Delta-G solvation = -3506.878651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.96030 -40.60259 -38.71142 -37.47809 -35.98137 -35.07816 -33.38265 -32.41172 -30.58496 -28.39637 -28.28569 -27.00732 -25.38988 -23.04597 -22.52561 -21.12745 -20.37265 -19.85091 -18.79271 -18.41509 -17.60119 -17.03092 -16.56495 -16.45075 -15.81988 -15.73492 -15.39771 -15.29872 -14.74164 -14.39326 -14.10947 -14.08563 -13.63532 -13.41102 -13.32949 -13.09140 -13.00669 -12.89224 -12.85563 -12.65879 -12.48436 -12.42835 -12.25847 -12.16782 -12.13460 -11.75480 -11.55025 -11.38651 -11.07915 -10.59019 -10.05467 -9.68061 -8.49447 -5.98680 1.01440 1.36056 1.37689 1.49093 1.82884 1.99280 2.27519 2.88290 3.15519 3.20413 3.59365 3.65978 3.76014 3.78947 3.93901 4.03971 4.18748 4.32610 4.48721 4.54655 4.58175 4.70112 4.73014 4.73713 4.80800 4.86788 4.87666 4.89804 5.07690 5.09597 5.21618 5.27659 5.31492 5.36198 5.37948 5.46966 5.94264 6.44539 6.55569 7.07792 7.32250 7.49904 8.05614 8.67568 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.005144 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.252505 B = 5442.216279 C = 6471.059559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.128 4.128 4 C -0.176 4.176 5 O -0.362 6.362 6 C 0.663 3.337 7 O -0.594 6.594 8 N -0.587 5.587 9 C 0.097 3.903 10 C -0.109 4.109 11 C -0.114 4.114 12 C 0.146 3.854 13 H 0.092 0.908 14 C 0.435 3.565 15 O -0.629 6.629 16 N -0.564 5.564 17 C -0.336 4.336 18 H 0.072 0.928 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 0.992 3.008 22 H -0.278 1.278 23 H -0.264 1.264 24 H -0.269 1.269 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.397 0.603 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.408 11.994 -1.165 18.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 C -0.185 4.185 4 C -0.233 4.233 5 O -0.277 6.277 6 C 0.418 3.582 7 O -0.484 6.484 8 N -0.328 5.328 9 C -0.024 4.024 10 C -0.147 4.147 11 C -0.153 4.153 12 C 0.039 3.961 13 H 0.109 0.891 14 C 0.222 3.778 15 O -0.516 6.516 16 N -0.201 5.201 17 C -0.465 4.465 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.557 5.557 21 Si 0.816 3.184 22 H -0.203 1.203 23 H -0.188 1.188 24 H -0.194 1.194 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.085 0.915 40 H 0.230 0.770 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.664 12.387 -1.420 18.497 hybrid contribution -1.352 -0.776 -0.202 1.572 sum 12.311 11.612 -1.623 17.001 Atomic orbital electron populations 1.22455 0.95432 1.02703 1.03123 1.22467 0.93676 0.93402 0.81817 1.21850 1.02770 0.89615 1.04295 1.22443 1.01965 1.01735 0.97201 1.86261 1.71554 1.22275 1.47585 1.17665 0.78032 0.80911 0.81563 1.90906 1.41599 1.71195 1.44713 1.46924 1.52260 1.11699 1.21879 1.22626 0.92958 0.98453 0.88408 1.22824 0.96537 0.91388 1.03923 1.22684 0.97474 1.02493 0.92629 1.21438 0.91348 0.82139 1.01215 0.89055 1.21012 0.91131 0.83213 0.82464 1.90470 1.65206 1.40013 1.55878 1.41830 1.07896 1.07744 1.62600 1.19554 0.84007 0.94510 1.48448 0.91029 1.26021 1.04754 0.94029 0.96082 1.69657 1.37879 0.99663 1.48464 0.85013 0.76774 0.77767 0.78883 1.20347 1.18837 1.19369 0.92952 0.88524 0.93817 0.90245 0.87656 0.91526 0.93091 0.88783 0.90951 0.87958 0.92280 0.87911 0.86264 0.86388 0.91496 0.76952 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.77 8.37 71.98 0.60 -5.17 16 2 C 0.12 3.45 1.13 -10.79 -0.01 3.44 16 3 C -0.13 -2.32 8.85 71.98 0.64 -1.68 16 4 C -0.18 -4.66 8.37 71.98 0.60 -4.05 16 5 O -0.36 -12.41 9.42 -55.54 -0.52 -12.93 16 6 C 0.66 27.56 7.32 129.79 0.95 28.51 16 7 O -0.59 -29.15 11.71 19.79 0.23 -28.91 16 8 N -0.59 -21.80 2.75 -922.34 -2.54 -24.34 16 9 C 0.10 2.49 6.92 86.86 0.60 3.09 16 10 C -0.11 -2.01 7.09 31.99 0.23 -1.78 16 11 C -0.11 -3.09 6.47 31.79 0.21 -2.89 16 12 C 0.15 5.61 3.25 44.60 0.15 5.75 16 13 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 14 C 0.44 22.76 6.24 87.66 0.55 23.31 16 15 O -0.63 -38.39 15.72 -3.06 -0.05 -38.44 16 16 N -0.56 -31.11 5.29 -306.99 -1.62 -32.73 16 17 C -0.34 -20.25 9.68 84.04 0.81 -19.43 16 18 H 0.07 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 20 N -0.92 -50.86 13.05 21.66 0.28 -50.57 16 21 Si 0.99 44.75 29.55 68.60 2.03 46.77 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.04 1.85 5.88 -2.39 -0.01 1.84 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.77 5.88 -2.38 -0.01 1.76 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 2.13 8.04 -2.39 -0.02 2.11 16 35 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.07 2.06 7.84 -2.39 -0.02 2.04 16 40 H 0.40 20.58 7.90 -92.71 -0.73 19.85 16 41 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -81.69 336.72 3.89 -77.80 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 0.30 Total: 34.28 kcal Atomic # 6 Polarization: 23.29 SS G_CDS: 5.79 Total: 29.08 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -3.88 Total: -107.65 kcal Atomic # 8 Polarization: -79.94 SS G_CDS: -0.34 Total: -80.28 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -81.69 3.89 -77.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013676554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.107 kcal (2) G-P(sol) polarization free energy of solvation -81.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds