Wall clock time and date at job start Tue Mar 31 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00561 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00568 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00127 * 3 2 1 7 7 C 1.38955 * 119.99445 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99763 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00445 * 359.71974 * 7 2 1 10 10 C 1.34774 * 120.00310 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00003 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00110 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47223 * 179.97438 * 12 10 9 14 14 C 1.46839 * 110.99645 * 66.04788 * 13 12 10 15 15 C 1.53042 * 109.52240 * 185.84102 * 14 13 12 16 16 C 1.53119 * 109.27640 * 300.82032 * 15 14 13 17 17 C 1.53124 * 109.16292 * 57.65326 * 16 15 14 18 18 H 1.09006 * 109.49975 * 62.28333 * 17 16 15 19 19 C 1.52997 * 109.50581 * 182.40670 * 17 16 15 20 20 C 1.53008 * 109.46748 * 294.99946 * 19 17 16 21 21 C 1.50703 * 109.46707 * 180.02562 * 20 19 17 22 22 O 1.20824 * 120.00111 * 0.02562 * 21 20 19 23 23 O 1.34228 * 119.99730 * 179.97438 * 21 20 19 24 24 C 1.46840 * 110.99900 * 190.25673 * 13 12 10 25 25 H 0.97000 * 119.99412 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99649 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47519 * 300.00142 * 12 10 9 28 28 H 1.09001 * 109.46880 * 60.00149 * 12 10 9 29 29 H 1.09001 * 109.46536 * 305.85221 * 14 13 12 30 30 H 1.09005 * 109.46719 * 65.83422 * 14 13 12 31 31 H 1.09001 * 109.50206 * 60.75748 * 15 14 13 32 32 H 1.08997 * 109.50456 * 180.84192 * 15 14 13 33 33 H 1.09002 * 109.52449 * 177.56104 * 16 15 14 34 34 H 1.09002 * 109.52211 * 297.74966 * 16 15 14 35 35 H 1.08998 * 109.47357 * 54.99974 * 19 17 16 36 36 H 1.08992 * 109.47103 * 175.00381 * 19 17 16 37 37 H 1.08998 * 109.47214 * 300.00115 * 20 19 17 38 38 H 1.08997 * 109.46996 * 59.99860 * 20 19 17 39 39 H 0.96697 * 117.00320 * 180.02562 * 23 21 20 40 40 H 1.08999 * 109.46620 * 294.17523 * 24 13 12 41 41 H 1.09003 * 109.46654 * 54.14756 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3462 -0.0006 5 1 1.8895 2.3964 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0087 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 0.0047 10 6 1.9971 -3.5579 0.0047 11 8 3.2100 -3.5580 0.0005 12 6 1.2435 -4.8630 0.0111 13 7 2.1980 -5.9796 0.0092 14 6 2.9687 -6.0152 1.2586 15 6 4.0485 -7.0955 1.1628 16 6 3.3850 -8.4524 0.9118 17 6 2.5497 -8.3742 -0.3691 18 1 3.2017 -8.1616 -1.2164 19 6 1.8351 -9.7080 -0.5953 20 6 2.8710 -10.8039 -0.8544 21 6 2.1671 -12.1176 -1.0779 22 8 0.9608 -12.1716 -1.0348 23 8 2.8803 -13.2274 -1.3257 24 6 1.5134 -7.2567 -0.2289 25 1 -0.4849 0.8401 0.0004 26 1 0.3532 -2.3906 0.0092 27 1 0.6206 -4.9186 0.9038 28 1 0.6131 -4.9228 -0.8761 29 1 3.4388 -5.0456 1.4231 30 1 2.3017 -6.2413 2.0905 31 1 4.7240 -6.8629 0.3396 32 1 4.6107 -7.1318 2.0959 33 1 4.1527 -9.2181 0.7998 34 1 2.7391 -8.7033 1.7532 35 1 1.2510 -9.9619 0.2892 36 1 1.1723 -9.6236 -1.4564 37 1 3.4550 -10.5500 -1.7390 38 1 3.5338 -10.8882 0.0067 39 1 2.3846 -14.0463 -1.4628 40 1 0.8532 -7.4768 0.6100 41 1 0.9264 -7.1889 -1.1448 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043585445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:28 Heat of formation + Delta-G solvation = -143.294800 kcal Electronic energy + Delta-G solvation = -22278.159593 eV Core-core repulsion = 18771.134082 eV Total energy + Delta-G solvation = -3507.025511 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58675 -39.30690 -37.78634 -36.50536 -34.89394 -33.77966 -32.33041 -31.16343 -30.09759 -27.38848 -25.35059 -24.60678 -22.77873 -22.07003 -20.67533 -19.63039 -19.09817 -18.35793 -17.80693 -16.83564 -16.46418 -15.99064 -15.35560 -14.85484 -14.62866 -14.57415 -14.21729 -13.87912 -13.73247 -13.56389 -13.27168 -13.01387 -12.55168 -12.34900 -12.12457 -11.85669 -11.69090 -11.50062 -11.36634 -11.29179 -11.02637 -10.88808 -10.84570 -10.56513 -10.33613 -10.23208 -10.19906 -10.11159 -9.44754 -8.38093 -7.94589 -7.77713 -6.39506 -3.80025 1.90299 2.73003 3.17687 3.28060 3.35265 3.93697 4.01498 4.26038 4.47375 4.63172 4.80094 4.90990 4.96691 5.12230 5.14735 5.25255 5.28214 5.44298 5.53674 5.62872 5.63900 5.69503 5.73778 5.82679 5.85966 5.97623 6.01956 6.07194 6.16931 6.19791 6.29196 6.32586 6.53051 6.60872 7.38229 7.51101 7.57091 7.57728 8.09530 8.64802 9.20853 9.57691 10.09661 10.78457 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.045267 B = 0.002693 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.409205 B =10394.037022 C =10749.827678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.051 3.949 15 C -0.113 4.113 16 C -0.118 4.118 17 C -0.083 4.083 18 H 0.084 0.916 19 C -0.103 4.103 20 C -0.114 4.114 21 C 0.477 3.523 22 O -0.517 6.517 23 O -0.521 6.521 24 C 0.061 3.939 25 H 0.270 0.730 26 H 0.392 0.608 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.019 0.981 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.408 0.592 40 H 0.029 0.971 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.995 -21.653 0.051 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.230 3.770 11 O -0.461 6.461 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.076 4.076 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.102 4.102 18 H 0.102 0.898 19 C -0.141 4.141 20 C -0.151 4.151 21 C 0.319 3.681 22 O -0.405 6.405 23 O -0.333 6.333 24 C -0.067 4.067 25 H 0.080 0.920 26 H 0.225 0.775 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.037 0.963 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.267 0.733 40 H 0.048 0.952 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.901 -21.045 -0.259 21.405 hybrid contribution -1.279 0.152 0.545 1.398 sum 2.622 -20.894 0.286 21.059 Atomic orbital electron populations 1.69623 1.05934 1.27987 1.50862 1.25262 0.95633 0.99707 0.97465 0.85806 0.79701 0.81204 0.77670 1.19235 1.20778 1.20818 1.19740 0.93360 0.82211 1.47317 0.87883 1.41885 1.09200 1.04615 1.64582 1.19760 0.88413 0.84549 0.84229 1.90480 1.13696 1.86905 1.55011 1.21835 0.93984 0.91278 1.01425 1.61470 1.24943 1.01272 1.36213 1.22258 0.95153 1.01543 0.88650 1.21537 0.98049 0.93668 1.01836 1.21736 0.98886 0.97806 0.97157 1.21178 0.97133 0.92719 0.99127 0.89798 1.21463 0.96847 0.92503 1.03328 1.21477 0.99955 0.88143 1.05568 1.23734 0.86318 0.86162 0.71840 1.90735 1.16126 1.86450 1.47147 1.84556 1.45515 1.20120 1.83078 1.22090 0.94920 0.89196 1.00519 0.91971 0.77514 0.93604 0.89415 0.88005 0.96270 0.90898 0.91956 0.92021 0.92398 0.91038 0.90769 0.87388 0.87378 0.73306 0.95244 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.57 -14.42 5.29 -10.96 -0.06 -14.48 16 10 C 0.45 10.53 7.46 -10.99 -0.08 10.45 16 11 O -0.58 -15.45 13.92 5.54 0.08 -15.37 16 12 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 13 N -0.51 -8.60 4.39 -236.11 -1.04 -9.63 16 14 C 0.05 0.84 5.11 -3.84 -0.02 0.82 16 15 C -0.11 -1.47 6.09 -26.65 -0.16 -1.63 16 16 C -0.12 -1.21 4.98 -26.61 -0.13 -1.34 16 17 C -0.08 -0.87 2.35 -90.54 -0.21 -1.08 16 18 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 19 C -0.10 -0.92 3.98 -26.73 -0.11 -1.03 16 20 C -0.11 -0.82 5.57 -27.88 -0.16 -0.97 16 21 C 0.48 4.14 8.33 36.01 0.30 4.44 16 22 O -0.52 -6.25 16.74 -18.75 -0.31 -6.56 16 23 O -0.52 -3.39 13.42 -39.25 -0.53 -3.92 16 24 C 0.06 0.79 4.74 -3.84 -0.02 0.77 16 25 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 27 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 28 H 0.09 1.45 7.98 -51.93 -0.41 1.04 16 29 H 0.10 2.04 5.80 -51.93 -0.30 1.74 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.50 6.70 -51.93 -0.35 0.16 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.64 6.62 -51.93 -0.34 0.29 16 39 H 0.41 1.06 9.10 45.56 0.41 1.47 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.90 8.01 -51.93 -0.42 0.49 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -33.35 335.81 -7.42 -40.77 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.46 Total: 8.73 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.86 Total: 3.28 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.37 Total: -48.09 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.76 Total: -25.85 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.35 -7.42 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043585445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.522 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds