Wall clock time and date at job start Tue Mar 31 2020 05:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00561 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00568 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00127 * 3 2 1 7 7 C 1.38955 * 119.99445 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99763 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00445 * 359.71974 * 7 2 1 10 10 C 1.34774 * 120.00310 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00003 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00110 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47223 * 179.97438 * 12 10 9 14 14 C 1.46839 * 110.99645 * 66.04788 * 13 12 10 15 15 C 1.53042 * 109.52240 * 185.84102 * 14 13 12 16 16 C 1.53119 * 109.27640 * 300.82032 * 15 14 13 17 17 C 1.53124 * 109.16292 * 57.65326 * 16 15 14 18 18 H 1.09006 * 109.49975 * 62.28333 * 17 16 15 19 19 C 1.52997 * 109.50581 * 182.40670 * 17 16 15 20 20 C 1.53008 * 109.46748 * 294.99946 * 19 17 16 21 21 C 1.50703 * 109.46707 * 180.02562 * 20 19 17 22 22 O 1.20824 * 120.00111 * 0.02562 * 21 20 19 23 23 O 1.34228 * 119.99730 * 179.97438 * 21 20 19 24 24 C 1.46840 * 110.99900 * 190.25673 * 13 12 10 25 25 H 0.97000 * 119.99412 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99649 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47519 * 300.00142 * 12 10 9 28 28 H 1.09001 * 109.46880 * 60.00149 * 12 10 9 29 29 H 1.09001 * 109.46536 * 305.85221 * 14 13 12 30 30 H 1.09005 * 109.46719 * 65.83422 * 14 13 12 31 31 H 1.09001 * 109.50206 * 60.75748 * 15 14 13 32 32 H 1.08997 * 109.50456 * 180.84192 * 15 14 13 33 33 H 1.09002 * 109.52449 * 177.56104 * 16 15 14 34 34 H 1.09002 * 109.52211 * 297.74966 * 16 15 14 35 35 H 1.08998 * 109.47357 * 54.99974 * 19 17 16 36 36 H 1.08992 * 109.47103 * 175.00381 * 19 17 16 37 37 H 1.08998 * 109.47214 * 300.00115 * 20 19 17 38 38 H 1.08997 * 109.46996 * 59.99860 * 20 19 17 39 39 H 0.96697 * 117.00320 * 180.02562 * 23 21 20 40 40 H 1.08999 * 109.46620 * 294.17523 * 24 13 12 41 41 H 1.09003 * 109.46654 * 54.14756 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3462 -0.0006 5 1 1.8895 2.3964 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0087 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 0.0047 10 6 1.9971 -3.5579 0.0047 11 8 3.2100 -3.5580 0.0005 12 6 1.2435 -4.8630 0.0111 13 7 2.1980 -5.9796 0.0092 14 6 2.9687 -6.0152 1.2586 15 6 4.0485 -7.0955 1.1628 16 6 3.3850 -8.4524 0.9118 17 6 2.5497 -8.3742 -0.3691 18 1 3.2017 -8.1616 -1.2164 19 6 1.8351 -9.7080 -0.5953 20 6 2.8710 -10.8039 -0.8544 21 6 2.1671 -12.1176 -1.0779 22 8 0.9608 -12.1716 -1.0348 23 8 2.8803 -13.2274 -1.3257 24 6 1.5134 -7.2567 -0.2289 25 1 -0.4849 0.8401 0.0004 26 1 0.3532 -2.3906 0.0092 27 1 0.6206 -4.9186 0.9038 28 1 0.6131 -4.9228 -0.8761 29 1 3.4388 -5.0456 1.4231 30 1 2.3017 -6.2413 2.0905 31 1 4.7240 -6.8629 0.3396 32 1 4.6107 -7.1318 2.0959 33 1 4.1527 -9.2181 0.7998 34 1 2.7391 -8.7033 1.7532 35 1 1.2510 -9.9619 0.2892 36 1 1.1723 -9.6236 -1.4564 37 1 3.4550 -10.5500 -1.7390 38 1 3.5338 -10.8882 0.0067 39 1 2.3846 -14.0463 -1.4628 40 1 0.8532 -7.4768 0.6100 41 1 0.9264 -7.1889 -1.1448 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043585445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:27 Heat of formation + Delta-G solvation = -168.148772 kcal Electronic energy + Delta-G solvation = -22279.237342 eV Core-core repulsion = 18771.134082 eV Total energy + Delta-G solvation = -3508.103261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25951 -40.65518 -39.35182 -37.14577 -36.18299 -35.54522 -33.49782 -33.09882 -30.98348 -28.90173 -26.49805 -26.13333 -23.96450 -22.98571 -21.52809 -20.87666 -20.57461 -19.83955 -18.98543 -17.79204 -17.46419 -17.09970 -16.59727 -16.49917 -16.26327 -15.73162 -15.53421 -15.11583 -15.03386 -14.85301 -14.22837 -14.02429 -13.80685 -13.57265 -13.44353 -13.07467 -12.97312 -12.71060 -12.53901 -12.49931 -12.39893 -12.14649 -12.09401 -11.82913 -11.59165 -11.53049 -11.45635 -11.25278 -11.03502 -10.21289 -9.98592 -9.14754 -8.45859 -5.94312 1.27672 1.36770 1.41662 1.56089 2.06530 2.20137 2.29747 2.81266 3.20914 3.41349 3.73592 3.90874 3.96544 4.10164 4.25075 4.28947 4.35663 4.40103 4.51983 4.53052 4.58444 4.65336 4.73476 4.81202 4.87809 4.89944 4.97017 5.10867 5.15412 5.25547 5.32020 5.41766 5.45081 5.59347 5.69533 5.93370 6.14103 6.31700 6.61924 7.04937 7.14150 7.57757 8.13688 8.71979 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.045267 B = 0.002693 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.409205 B =10394.037022 C =10749.827678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.016 4.016 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.079 0.921 9 N -0.577 5.577 10 C 0.443 3.557 11 O -0.612 6.612 12 C 0.056 3.944 13 N -0.532 5.532 14 C 0.051 3.949 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.075 4.075 18 H 0.080 0.920 19 C -0.094 4.094 20 C -0.112 4.112 21 C 0.482 3.518 22 O -0.558 6.558 23 O -0.516 6.516 24 C 0.058 3.942 25 H 0.277 0.723 26 H 0.395 0.605 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.425 0.575 40 H 0.036 0.964 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 -23.149 0.036 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.215 4.215 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.097 0.903 9 N -0.214 5.214 10 C 0.230 3.770 11 O -0.498 6.498 12 C -0.075 4.075 13 N -0.256 5.256 14 C -0.076 4.076 15 C -0.147 4.147 16 C -0.149 4.149 17 C -0.094 4.094 18 H 0.098 0.902 19 C -0.132 4.132 20 C -0.149 4.149 21 C 0.327 3.673 22 O -0.449 6.449 23 O -0.330 6.330 24 C -0.069 4.069 25 H 0.086 0.914 26 H 0.229 0.771 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.286 0.714 40 H 0.054 0.946 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.120 -22.583 -0.279 22.957 hybrid contribution -1.326 0.544 0.544 1.533 sum 2.794 -22.038 0.265 22.216 Atomic orbital electron populations 1.69685 1.06856 1.29167 1.50652 1.26054 0.96558 1.02444 0.96434 0.84862 0.78031 0.77094 0.78298 1.19758 1.19628 1.19623 1.19684 0.92646 0.83956 1.49609 0.90317 1.41960 1.09289 1.04755 1.65421 1.20756 0.88321 0.85864 0.82047 1.90458 1.15599 1.87738 1.55968 1.21720 0.93778 0.88935 1.03057 1.61467 1.25262 1.02393 1.36504 1.22175 0.96037 1.00475 0.88939 1.21506 0.96938 0.94226 1.01987 1.21720 0.99512 0.96586 0.97091 1.21106 0.96480 0.92544 0.99266 0.90154 1.21305 0.97005 0.92108 1.02783 1.21500 0.99477 0.86747 1.07159 1.23960 0.85726 0.86953 0.70698 1.90729 1.17855 1.87098 1.49221 1.84518 1.45465 1.20607 1.82404 1.22234 0.95716 0.87987 1.00988 0.91362 0.77121 0.92028 0.87435 0.92543 0.95540 0.92400 0.90665 0.89071 0.91718 0.91546 0.91554 0.85748 0.85439 0.71353 0.94557 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.48 13.05 21.66 0.28 -50.20 16 2 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 3 Si 0.99 43.44 29.55 68.60 2.03 45.46 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.58 -30.21 5.29 -306.98 -1.62 -31.83 16 10 C 0.44 21.54 7.46 87.66 0.65 22.20 16 11 O -0.61 -34.13 13.92 -3.08 -0.04 -34.17 16 12 C 0.06 2.03 5.45 85.56 0.47 2.50 16 13 N -0.53 -17.50 4.39 -900.93 -3.96 -21.45 16 14 C 0.05 1.68 5.11 86.33 0.44 2.12 16 15 C -0.11 -2.69 6.09 30.65 0.19 -2.51 16 16 C -0.11 -1.96 4.98 30.68 0.15 -1.80 16 17 C -0.08 -1.40 2.35 -10.74 -0.03 -1.43 16 18 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 19 C -0.09 -1.45 3.98 30.60 0.12 -1.33 16 20 C -0.11 -1.25 5.57 29.85 0.17 -1.08 16 21 C 0.48 7.27 8.33 71.24 0.59 7.86 16 22 O -0.56 -12.75 16.74 21.97 0.37 -12.38 16 23 O -0.52 -5.37 13.42 -51.40 -0.69 -6.06 16 24 C 0.06 1.40 4.74 86.33 0.41 1.81 16 25 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 26 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 27 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 28 H 0.11 3.45 7.98 -2.39 -0.02 3.43 16 29 H 0.06 2.36 5.80 -2.39 -0.01 2.35 16 30 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.11 6.70 -2.39 -0.02 1.09 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.07 1.14 8.10 -2.39 -0.02 1.13 16 37 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.13 0.96 6.62 -2.39 -0.02 0.95 16 39 H 0.43 1.23 9.10 -74.06 -0.67 0.55 16 40 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 1.81 8.01 -2.39 -0.02 1.79 16 Total: -1.00 -73.77 335.81 0.46 -73.31 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.35 Total: 27.46 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 4.45 Total: 9.84 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -5.30 Total: -103.48 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -0.37 Total: -52.61 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -73.77 0.46 -73.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043585445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.835 kcal (2) G-P(sol) polarization free energy of solvation -73.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds