Wall clock time and date at job start Tue Mar 31 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48499 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46825 * 300.00313 * 3 2 1 6 6 H 1.48499 * 109.47155 * 59.99816 * 3 2 1 7 7 C 1.37872 * 119.99540 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00262 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.34768 * 120.00224 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00219 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00133 * 179.97438 * 11 10 9 14 14 N 1.46909 * 109.46842 * 180.02562 * 13 11 10 15 15 C 1.46846 * 111.00243 * 66.04838 * 14 13 11 16 16 C 1.53036 * 109.52162 * 174.15828 * 15 14 13 17 17 C 1.53118 * 109.28007 * 59.18140 * 16 15 14 18 18 C 1.53123 * 109.15585 * 302.34276 * 17 16 15 19 19 H 1.09003 * 109.50448 * 297.71148 * 18 17 16 20 20 C 1.53005 * 109.49984 * 177.59503 * 18 17 16 21 21 C 1.50707 * 109.46858 * 65.00071 * 20 18 17 22 22 O 1.20824 * 120.00085 * 359.97438 * 21 20 18 23 23 O 1.34226 * 119.99799 * 179.97438 * 21 20 18 24 24 C 1.46846 * 111.00162 * 301.83310 * 14 13 11 25 25 H 0.97011 * 119.99946 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47160 * 60.00004 * 9 7 2 27 27 H 1.08998 * 109.46962 * 300.00059 * 9 7 2 28 28 H 0.97004 * 119.99761 * 359.97438 * 10 9 7 29 29 H 1.09000 * 109.46932 * 60.00534 * 13 11 10 30 30 H 1.08998 * 109.47176 * 299.99955 * 13 11 10 31 31 H 1.08998 * 109.45759 * 294.17597 * 15 14 13 32 32 H 1.09004 * 109.46280 * 54.13953 * 15 14 13 33 33 H 1.09008 * 109.49869 * 179.11730 * 16 15 14 34 34 H 1.09000 * 109.50168 * 299.23597 * 16 15 14 35 35 H 1.08993 * 109.52399 * 62.24659 * 17 16 15 36 36 H 1.08996 * 109.51997 * 182.43867 * 17 16 15 37 37 H 1.08995 * 109.46888 * 184.99870 * 20 18 17 38 38 H 1.08993 * 109.47066 * 305.00058 * 20 18 17 39 39 H 0.96702 * 117.00299 * 179.97438 * 23 21 20 40 40 H 1.08999 * 109.46373 * 305.86398 * 24 14 13 41 41 H 1.08998 * 109.45881 * 65.82485 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3965 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8833 0.0000 12 8 0.5612 -5.1050 0.0000 13 6 2.7329 -6.0288 -0.0006 14 7 1.9982 -7.3010 -0.0005 15 6 1.2526 -7.4783 -1.2530 16 6 0.6202 -8.8716 -1.2789 17 6 -0.3184 -9.0232 -0.0786 18 6 0.4727 -8.7861 1.2109 19 1 1.2536 -9.5410 1.3027 20 6 -0.4702 -8.8766 2.4124 21 6 -1.0058 -10.2807 2.5261 22 8 -0.6684 -11.1224 1.7277 23 8 -1.8576 -10.5961 3.5143 24 6 1.1094 -7.3953 1.1646 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 3.1566 -3.4355 -0.0009 29 1 3.3601 -5.9710 0.8890 30 1 3.3589 -5.9712 -0.8910 31 1 0.4697 -6.7228 -1.3196 32 1 1.9323 -7.3722 -2.0985 33 1 0.0538 -8.9971 -2.2018 34 1 1.4035 -9.6278 -1.2262 35 1 -1.1238 -8.2925 -0.1514 36 1 -0.7377 -10.0292 -0.0690 37 1 0.0741 -8.6207 3.3214 38 1 -1.2988 -8.1815 2.2772 39 1 -2.1745 -11.5092 3.5461 40 1 1.6851 -7.2289 2.0751 41 1 0.3272 -6.6402 1.0867 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054300127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:18 Heat of formation + Delta-G solvation = -138.444578 kcal Electronic energy + Delta-G solvation = -22764.412716 eV Core-core repulsion = 19257.597526 eV Total energy + Delta-G solvation = -3506.815190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.64470 -39.77823 -37.80278 -36.30527 -34.40146 -33.82689 -32.40543 -31.99040 -28.51197 -27.79747 -26.31506 -23.43527 -22.95136 -22.20846 -20.86318 -19.76834 -19.61478 -18.22944 -17.22431 -16.66457 -16.11548 -15.80762 -15.76034 -15.04344 -14.93016 -14.60632 -14.35928 -14.13637 -13.64983 -13.62615 -12.96035 -12.74473 -12.45323 -12.26054 -12.00608 -11.91796 -11.85755 -11.63736 -11.41109 -11.00143 -10.98628 -10.88284 -10.63431 -10.58652 -10.36995 -10.24696 -10.04222 -9.76320 -9.42340 -8.77741 -7.94034 -7.78499 -6.21099 -4.28209 2.04971 2.86239 3.20346 3.24797 3.27766 3.30674 4.04272 4.09155 4.34836 4.62877 4.74366 4.96735 5.13974 5.15289 5.25011 5.30182 5.38514 5.47361 5.50560 5.59367 5.65874 5.71677 5.80340 5.93126 6.03178 6.08560 6.16917 6.27036 6.37203 6.43784 6.57653 7.09121 7.20359 7.26060 7.39214 7.45727 7.61821 7.72558 7.92258 8.55921 8.72327 9.02849 9.38763 10.88991 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.003159 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.290237 B = 8860.543884 C = 9382.177481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.710 5.710 11 C 0.465 3.535 12 O -0.555 6.555 13 C 0.032 3.968 14 N -0.513 5.513 15 C 0.039 3.961 16 C -0.109 4.109 17 C -0.122 4.122 18 C -0.069 4.069 19 H 0.082 0.918 20 C -0.111 4.111 21 C 0.480 3.520 22 O -0.512 6.512 23 O -0.520 6.520 24 C 0.037 3.963 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.391 0.609 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.407 0.593 40 H 0.066 0.934 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.839 -18.463 3.529 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.358 5.358 11 C 0.250 3.750 12 O -0.436 6.436 13 C -0.100 4.100 14 N -0.236 5.236 15 C -0.089 4.089 16 C -0.147 4.147 17 C -0.160 4.160 18 C -0.087 4.087 19 H 0.101 0.899 20 C -0.149 4.149 21 C 0.323 3.677 22 O -0.400 6.400 23 O -0.332 6.332 24 C -0.091 4.091 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.223 0.777 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.266 0.734 40 H 0.085 0.915 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.403 -18.675 3.316 19.019 hybrid contribution 0.096 1.186 0.005 1.190 sum 1.499 -17.490 3.320 17.865 Atomic orbital electron populations 1.69986 1.06125 1.27219 1.48963 1.24961 0.94918 0.99511 0.94658 0.86360 0.79849 0.82931 0.77780 1.19605 1.20785 1.20773 1.21266 0.93296 0.90477 1.53138 0.91856 1.19090 0.88369 0.82175 0.97580 1.46629 1.11164 1.06508 1.71488 1.21835 0.90350 0.85312 0.77550 1.90542 1.17153 1.84369 1.51496 1.22290 0.96289 0.86851 1.04569 1.62343 1.28639 1.29385 1.03184 1.22288 0.97786 0.97612 0.91168 1.21484 0.98553 0.96917 0.97731 1.21759 0.97986 1.02262 0.93976 1.20971 0.96694 0.98322 0.92755 0.89942 1.21443 1.01414 0.90186 1.01847 1.23628 0.75190 0.91821 0.77097 1.90694 1.56969 1.51193 1.41155 1.84569 1.59445 1.37608 1.51607 1.22435 0.97230 0.96614 0.92804 0.92493 0.95664 0.95650 0.77650 0.88216 0.88262 0.91706 0.91573 0.91859 0.91620 0.92225 0.90710 0.87518 0.87339 0.73440 0.91538 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.43 5.43 -5.19 -0.03 6.40 16 10 N -0.71 -14.23 5.55 -61.47 -0.34 -14.57 16 11 C 0.47 8.60 7.25 -10.99 -0.08 8.52 16 12 O -0.55 -12.07 11.62 5.55 0.06 -12.01 16 13 C 0.03 0.43 5.86 -4.97 -0.03 0.40 16 14 N -0.51 -7.09 4.86 -236.11 -1.15 -8.24 16 15 C 0.04 0.55 5.10 -3.84 -0.02 0.53 16 16 C -0.11 -1.36 6.09 -26.65 -0.16 -1.52 16 17 C -0.12 -1.54 4.99 -26.61 -0.13 -1.68 16 18 C -0.07 -0.81 2.00 -90.54 -0.18 -1.00 16 19 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 20 C -0.11 -1.10 5.29 -27.88 -0.15 -1.24 16 21 C 0.48 4.98 8.06 36.01 0.29 5.27 16 22 O -0.51 -6.66 14.73 -18.75 -0.28 -6.94 16 23 O -0.52 -4.23 13.42 -39.25 -0.53 -4.75 16 24 C 0.04 0.50 4.26 -3.84 -0.02 0.48 16 25 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.39 6.70 8.32 -40.82 -0.34 6.36 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.18 8.06 -51.93 -0.42 0.76 16 31 H 0.06 1.11 6.00 -51.93 -0.31 0.80 16 32 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 33 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.97 6.02 -51.93 -0.31 0.65 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.41 1.60 9.10 45.56 0.41 2.01 16 40 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 41 H 0.08 1.41 5.36 -51.93 -0.28 1.13 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -32.96 331.44 -7.85 -40.82 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.42 Total: 7.18 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.92 Total: 2.99 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.75 Total: -47.87 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.74 Total: -23.70 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.96 -7.85 -40.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054300127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.627 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds