Wall clock time and date at job start Tue Mar 31 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48499 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46825 * 300.00313 * 3 2 1 6 6 H 1.48499 * 109.47155 * 59.99816 * 3 2 1 7 7 C 1.37872 * 119.99540 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00262 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.34768 * 120.00224 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00219 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00133 * 179.97438 * 11 10 9 14 14 N 1.46909 * 109.46842 * 180.02562 * 13 11 10 15 15 C 1.46846 * 111.00243 * 66.04838 * 14 13 11 16 16 C 1.53036 * 109.52162 * 174.15828 * 15 14 13 17 17 C 1.53118 * 109.28007 * 59.18140 * 16 15 14 18 18 C 1.53123 * 109.15585 * 302.34276 * 17 16 15 19 19 H 1.09003 * 109.50448 * 297.71148 * 18 17 16 20 20 C 1.53005 * 109.49984 * 177.59503 * 18 17 16 21 21 C 1.50707 * 109.46858 * 65.00071 * 20 18 17 22 22 O 1.20824 * 120.00085 * 359.97438 * 21 20 18 23 23 O 1.34226 * 119.99799 * 179.97438 * 21 20 18 24 24 C 1.46846 * 111.00162 * 301.83310 * 14 13 11 25 25 H 0.97011 * 119.99946 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47160 * 60.00004 * 9 7 2 27 27 H 1.08998 * 109.46962 * 300.00059 * 9 7 2 28 28 H 0.97004 * 119.99761 * 359.97438 * 10 9 7 29 29 H 1.09000 * 109.46932 * 60.00534 * 13 11 10 30 30 H 1.08998 * 109.47176 * 299.99955 * 13 11 10 31 31 H 1.08998 * 109.45759 * 294.17597 * 15 14 13 32 32 H 1.09004 * 109.46280 * 54.13953 * 15 14 13 33 33 H 1.09008 * 109.49869 * 179.11730 * 16 15 14 34 34 H 1.09000 * 109.50168 * 299.23597 * 16 15 14 35 35 H 1.08993 * 109.52399 * 62.24659 * 17 16 15 36 36 H 1.08996 * 109.51997 * 182.43867 * 17 16 15 37 37 H 1.08995 * 109.46888 * 184.99870 * 20 18 17 38 38 H 1.08993 * 109.47066 * 305.00058 * 20 18 17 39 39 H 0.96702 * 117.00299 * 179.97438 * 23 21 20 40 40 H 1.08999 * 109.46373 * 305.86398 * 24 14 13 41 41 H 1.08998 * 109.45881 * 65.82485 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3965 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8833 0.0000 12 8 0.5612 -5.1050 0.0000 13 6 2.7329 -6.0288 -0.0006 14 7 1.9982 -7.3010 -0.0005 15 6 1.2526 -7.4783 -1.2530 16 6 0.6202 -8.8716 -1.2789 17 6 -0.3184 -9.0232 -0.0786 18 6 0.4727 -8.7861 1.2109 19 1 1.2536 -9.5410 1.3027 20 6 -0.4702 -8.8766 2.4124 21 6 -1.0058 -10.2807 2.5261 22 8 -0.6684 -11.1224 1.7277 23 8 -1.8576 -10.5961 3.5143 24 6 1.1094 -7.3953 1.1646 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8897 28 1 3.1566 -3.4355 -0.0009 29 1 3.3601 -5.9710 0.8890 30 1 3.3589 -5.9712 -0.8910 31 1 0.4697 -6.7228 -1.3196 32 1 1.9323 -7.3722 -2.0985 33 1 0.0538 -8.9971 -2.2018 34 1 1.4035 -9.6278 -1.2262 35 1 -1.1238 -8.2925 -0.1514 36 1 -0.7377 -10.0292 -0.0690 37 1 0.0741 -8.6207 3.3214 38 1 -1.2988 -8.1815 2.2772 39 1 -2.1745 -11.5092 3.5461 40 1 1.6851 -7.2289 2.0751 41 1 0.3272 -6.6402 1.0867 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054300127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:17 Heat of formation + Delta-G solvation = -164.412025 kcal Electronic energy + Delta-G solvation = -22765.538749 eV Core-core repulsion = 19257.597526 eV Total energy + Delta-G solvation = -3507.941223 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.59292 -41.00998 -39.05765 -37.11847 -36.14168 -34.99791 -34.35035 -33.03641 -30.07004 -28.92315 -27.82286 -24.98080 -23.91367 -23.73124 -21.88013 -21.28373 -20.69302 -19.06426 -18.89438 -17.65464 -17.41616 -17.22556 -16.92207 -16.57253 -16.37174 -15.84781 -15.70255 -15.35437 -15.02321 -14.71922 -14.16066 -14.09198 -13.90746 -13.79204 -13.35615 -13.15981 -12.91916 -12.83201 -12.76607 -12.49677 -12.46550 -12.23108 -11.82941 -11.76931 -11.62823 -11.45457 -11.29103 -11.24756 -11.03280 -10.80869 -9.77119 -9.09606 -8.29909 -6.46422 1.24419 1.42866 1.43417 1.57032 1.76302 2.14269 2.32823 2.65485 2.97170 3.05026 3.70260 3.80819 3.96281 4.08973 4.19195 4.23301 4.41363 4.46747 4.55828 4.61505 4.62939 4.73051 4.77799 4.94103 4.95286 5.02396 5.09317 5.14416 5.23482 5.25885 5.31115 5.46780 5.53686 5.68534 5.73308 5.85602 5.99891 6.06384 6.65774 6.93381 7.04203 7.23573 7.52536 8.81990 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.003159 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.290237 B = 8860.543884 C = 9382.177481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.983 3.017 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.268 3.732 10 N -0.707 5.707 11 C 0.462 3.538 12 O -0.590 6.590 13 C 0.043 3.957 14 N -0.506 5.506 15 C 0.040 3.960 16 C -0.105 4.105 17 C -0.121 4.121 18 C -0.061 4.061 19 H 0.083 0.917 20 C -0.111 4.111 21 C 0.487 3.513 22 O -0.542 6.542 23 O -0.516 6.516 24 C 0.039 3.961 25 H 0.268 0.732 26 H -0.017 1.017 27 H -0.014 1.014 28 H 0.408 0.592 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.028 0.972 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.107 0.893 39 H 0.426 0.574 40 H 0.082 0.918 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.233 -18.986 4.116 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.145 3.855 10 N -0.358 5.358 11 C 0.248 3.752 12 O -0.472 6.472 13 C -0.089 4.089 14 N -0.227 5.227 15 C -0.088 4.088 16 C -0.143 4.143 17 C -0.158 4.158 18 C -0.080 4.080 19 H 0.101 0.899 20 C -0.149 4.149 21 C 0.331 3.669 22 O -0.432 6.432 23 O -0.330 6.330 24 C -0.089 4.089 25 H 0.077 0.923 26 H 0.001 0.999 27 H 0.004 0.996 28 H 0.244 0.756 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.146 0.854 38 H 0.126 0.874 39 H 0.288 0.712 40 H 0.100 0.900 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.823 -19.247 3.919 20.011 hybrid contribution -0.740 1.256 -0.154 1.466 sum 3.083 -17.991 3.765 18.638 Atomic orbital electron populations 1.70146 1.08262 1.28426 1.50181 1.26058 0.95758 1.03907 0.93934 0.85133 0.79167 0.77437 0.77629 1.17571 1.20597 1.20479 1.21669 0.94306 0.90688 1.52548 0.89849 1.18470 0.88730 0.84577 0.93751 1.46383 1.11130 1.05873 1.72384 1.22921 0.90830 0.85703 0.75698 1.90561 1.19386 1.84861 1.52425 1.22475 0.95113 0.83948 1.07326 1.62451 1.28383 1.28824 1.03078 1.22268 0.97138 0.97451 0.91892 1.21471 0.98718 0.96050 0.98051 1.21726 0.97764 1.01553 0.94775 1.20865 0.96852 0.97067 0.93166 0.89857 1.21426 1.01310 0.90250 1.01923 1.23560 0.74937 0.91499 0.76861 1.90686 1.58189 1.52018 1.42326 1.84521 1.58638 1.39360 1.50475 1.22400 0.96527 0.96628 0.93358 0.92326 0.99898 0.99630 0.75630 0.85134 0.85541 0.95351 0.90246 0.91109 0.90713 0.93846 0.90834 0.85403 0.87445 0.71203 0.89969 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.98 41.88 29.54 68.60 2.03 43.91 16 4 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -29.68 9.28 25.60 0.24 -29.44 16 8 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.27 14.40 5.43 85.63 0.46 14.86 16 10 N -0.71 -28.41 5.55 -466.79 -2.59 -31.00 16 11 C 0.46 17.07 7.25 87.66 0.64 17.70 16 12 O -0.59 -26.77 11.62 -3.05 -0.04 -26.80 16 13 C 0.04 1.06 5.86 85.56 0.50 1.57 16 14 N -0.51 -13.15 4.86 -900.93 -4.38 -17.53 16 15 C 0.04 1.12 5.10 86.33 0.44 1.56 16 16 C -0.11 -2.54 6.09 30.65 0.19 -2.36 16 17 C -0.12 -3.04 4.99 30.67 0.15 -2.89 16 18 C -0.06 -1.39 2.00 -10.74 -0.02 -1.41 16 19 H 0.08 1.94 7.96 -2.39 -0.02 1.92 16 20 C -0.11 -2.09 5.29 29.85 0.16 -1.94 16 21 C 0.49 9.52 8.06 71.24 0.57 10.10 16 22 O -0.54 -13.58 14.73 21.97 0.32 -13.25 16 23 O -0.52 -7.50 13.42 -51.38 -0.69 -8.19 16 24 C 0.04 1.02 4.26 86.32 0.37 1.39 16 25 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 26 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 27 H -0.01 -0.87 8.14 -2.39 -0.02 -0.88 16 28 H 0.41 13.37 8.32 -92.71 -0.77 12.60 16 29 H 0.13 2.53 8.14 -2.39 -0.02 2.52 16 30 H 0.13 2.54 8.06 -2.39 -0.02 2.52 16 31 H 0.03 1.01 6.00 -2.39 -0.01 0.99 16 32 H 0.08 1.96 8.06 -2.39 -0.02 1.94 16 33 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.89 6.02 -2.39 -0.01 1.87 16 37 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.43 2.55 9.10 -74.06 -0.67 1.88 16 40 H 0.08 1.89 8.12 -2.39 -0.02 1.87 16 41 H 0.05 1.73 5.36 -2.39 -0.01 1.72 16 Total: -1.00 -74.18 331.44 -1.29 -75.47 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.39 Total: 23.16 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 4.16 Total: 9.76 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -6.68 Total: -104.05 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.40 Total: -48.24 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -74.18 -1.29 -75.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054300127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.946 kcal (2) G-P(sol) polarization free energy of solvation -74.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds