Wall clock time and date at job start Tue Mar 31 2020 05:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00199 * 2 1 4 4 H 1.48500 * 109.46919 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47237 * 119.99677 * 3 2 1 6 6 H 1.48502 * 109.46756 * 239.99924 * 3 2 1 7 7 C 1.37873 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00136 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99857 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99980 * 179.97438 * 11 10 9 14 14 N 1.46893 * 109.47341 * 173.73443 * 13 11 10 15 15 C 1.46843 * 111.00203 * 169.40008 * 14 13 11 16 16 C 1.53043 * 109.52402 * 185.83956 * 15 14 13 17 17 C 1.53115 * 109.27788 * 300.81861 * 16 15 14 18 18 C 1.53119 * 109.16074 * 57.65660 * 17 16 15 19 19 H 1.09000 * 109.53829 * 62.30461 * 18 17 16 20 20 C 1.52999 * 109.51003 * 182.40434 * 18 17 16 21 21 C 1.50701 * 109.46668 * 294.80665 * 20 18 17 22 22 O 1.20821 * 120.00141 * 359.97438 * 21 20 18 23 23 O 1.34237 * 119.99951 * 180.02562 * 21 20 18 24 24 C 1.46846 * 111.00179 * 293.61384 * 14 13 11 25 25 H 0.96993 * 119.99755 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47215 * 299.99346 * 9 7 2 27 27 H 1.08997 * 109.47488 * 59.99764 * 9 7 2 28 28 H 0.97001 * 119.99990 * 359.97438 * 10 9 7 29 29 H 1.09009 * 109.47164 * 293.73350 * 13 11 10 30 30 H 1.09003 * 109.47249 * 53.72947 * 13 11 10 31 31 H 1.09003 * 109.46698 * 305.85575 * 15 14 13 32 32 H 1.08999 * 109.46377 * 65.82551 * 15 14 13 33 33 H 1.08999 * 109.50480 * 180.88031 * 16 15 14 34 34 H 1.09000 * 109.53685 * 60.78402 * 16 15 14 35 35 H 1.09001 * 109.52652 * 297.75283 * 17 16 15 36 36 H 1.09003 * 109.57598 * 177.58894 * 17 16 15 37 37 H 1.09005 * 109.46832 * 54.79354 * 20 18 17 38 38 H 1.08992 * 109.47704 * 174.80107 * 20 18 17 39 39 H 0.96693 * 117.00061 * 179.97438 * 23 21 20 40 40 H 1.09010 * 109.46083 * 294.17351 * 24 14 13 41 41 H 1.08999 * 109.46405 * 54.15148 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7537 -4.8834 0.0025 12 8 0.5613 -5.1049 0.0017 13 6 2.7329 -6.0288 0.0032 14 7 2.0048 -7.2955 0.1551 15 6 2.8879 -8.4428 -0.0898 16 6 2.0669 -9.7342 -0.0667 17 6 1.3832 -9.8743 1.2962 18 6 0.5072 -8.6440 1.5478 19 1 -0.2737 -8.5912 0.7893 20 6 -0.1330 -8.7474 2.9336 21 6 -1.0807 -9.9187 2.9628 22 8 -1.2292 -10.6005 1.9765 23 8 -1.7608 -10.2040 4.0845 24 6 1.3733 -7.3842 1.4779 25 1 -0.4849 -0.8400 -0.0004 26 1 0.6240 -2.5567 0.8904 27 1 0.6246 -2.5571 -0.8896 28 1 3.1567 -3.4355 0.0021 29 1 3.2835 -6.0368 -0.9376 30 1 3.4312 -5.9095 0.8317 31 1 3.3646 -8.3330 -1.0638 32 1 3.6525 -8.4847 0.6859 33 1 2.7252 -10.5870 -0.2329 34 1 1.3110 -9.6997 -0.8512 35 1 2.1398 -9.9487 2.0774 36 1 0.7630 -10.7707 1.3032 37 1 0.6450 -8.8908 3.6834 38 1 -0.6815 -7.8307 3.1498 39 1 -2.3571 -10.9645 4.0549 40 1 2.1451 -7.4310 2.2463 41 1 0.7498 -6.5054 1.6424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054300130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:21 Heat of formation + Delta-G solvation = -143.301322 kcal Electronic energy + Delta-G solvation = -22557.739182 eV Core-core repulsion = 19050.713388 eV Total energy + Delta-G solvation = -3507.025794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67040 -39.54430 -38.14434 -36.37721 -34.50758 -34.10356 -32.42756 -32.14690 -28.46834 -27.89459 -26.05486 -23.49332 -23.10360 -22.36588 -20.93743 -19.78547 -19.69332 -18.26411 -17.44855 -16.78759 -16.27491 -16.16958 -15.77294 -15.24460 -14.83208 -14.48319 -14.30081 -13.88371 -13.81035 -13.64235 -13.04537 -13.01072 -12.65300 -12.53455 -12.23692 -12.21642 -11.95865 -11.70102 -11.41081 -11.15869 -11.02562 -10.99337 -10.79139 -10.78030 -10.42240 -10.23927 -10.17119 -9.14627 -8.79531 -8.68808 -8.25276 -7.98486 -6.52564 -4.26283 2.01117 2.80722 3.29098 3.36529 3.38522 3.57257 3.61880 4.20790 4.44659 4.53104 4.65384 4.80044 4.96994 4.99248 5.18655 5.24507 5.26179 5.33086 5.33795 5.36564 5.46359 5.50727 5.58278 5.64022 5.73687 5.85542 5.95915 6.06934 6.18766 6.32072 6.38184 6.91598 7.04321 7.11178 7.21661 7.32699 7.65713 7.68699 8.25810 8.46986 8.70782 9.00524 9.47657 10.87585 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.003181 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.047657 B = 8800.176598 C = 9664.686234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 1.075 2.925 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.624 4.624 8 H 0.057 0.943 9 C 0.242 3.758 10 N -0.711 5.711 11 C 0.497 3.503 12 O -0.538 6.538 13 C 0.037 3.963 14 N -0.518 5.518 15 C 0.055 3.945 16 C -0.113 4.113 17 C -0.123 4.123 18 C -0.071 4.071 19 H 0.093 0.907 20 C -0.111 4.111 21 C 0.480 3.520 22 O -0.511 6.511 23 O -0.520 6.520 24 C 0.060 3.940 25 H 0.273 0.727 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.392 0.608 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.408 0.592 40 H 0.029 0.971 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.478 -20.361 5.998 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.184 4.184 3 Si 0.903 3.097 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.662 4.662 8 H 0.075 0.925 9 C 0.120 3.880 10 N -0.360 5.360 11 C 0.281 3.719 12 O -0.416 6.416 13 C -0.094 4.094 14 N -0.242 5.242 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.160 4.160 18 C -0.090 4.090 19 H 0.111 0.889 20 C -0.149 4.149 21 C 0.323 3.677 22 O -0.398 6.398 23 O -0.332 6.332 24 C -0.068 4.068 25 H 0.083 0.917 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.224 0.776 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.267 0.733 40 H 0.047 0.953 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.256 -18.703 5.377 19.920 hybrid contribution 0.974 -2.043 0.583 2.337 sum 5.230 -20.745 5.960 22.209 Atomic orbital electron populations 1.70759 1.06874 1.31066 1.44909 1.25878 0.96428 1.02741 0.93310 0.83452 0.74815 0.74904 0.76559 1.20553 1.21301 1.21288 1.22066 0.94533 0.91561 1.58037 0.92527 1.19134 0.88983 0.83463 0.96373 1.46289 1.10974 1.05809 1.72955 1.20383 0.89683 0.84058 0.77729 1.90644 1.16614 1.84610 1.49697 1.21987 0.95104 0.89466 1.02823 1.61438 1.31878 1.00423 1.30457 1.22145 0.93779 0.90617 1.00720 1.21524 0.99485 0.95963 0.98095 1.21793 0.98509 0.98605 0.97132 1.20991 0.98415 0.94813 0.94792 0.88902 1.21428 0.97483 0.95372 1.00606 1.23553 0.78996 0.85349 0.79814 1.90701 1.63291 1.50499 1.35349 1.84558 1.56103 1.52335 1.40235 1.22185 0.97249 0.98957 0.88391 0.91687 0.96662 0.96568 0.77581 0.88132 0.92548 0.90692 0.95067 0.91603 0.90805 0.92782 0.90308 0.87776 0.87113 0.73340 0.95319 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.65 55.43 0.76 -26.49 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.26 29.90 -169.99 -5.08 19.17 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.62 -17.05 9.28 -34.44 -0.32 -17.37 16 8 H 0.06 1.46 7.60 -52.49 -0.40 1.06 16 9 C 0.24 6.34 4.74 -5.19 -0.02 6.31 16 10 N -0.71 -14.78 5.55 -61.47 -0.34 -15.12 16 11 C 0.50 9.70 7.36 -10.99 -0.08 9.62 16 12 O -0.54 -12.58 14.71 5.55 0.08 -12.50 16 13 C 0.04 0.53 5.45 -4.98 -0.03 0.50 16 14 N -0.52 -7.24 4.35 -236.11 -1.03 -8.26 16 15 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 16 C -0.11 -1.17 6.09 -26.65 -0.16 -1.33 16 17 C -0.12 -1.30 5.00 -26.61 -0.13 -1.43 16 18 C -0.07 -0.85 2.00 -90.54 -0.18 -1.03 16 19 H 0.09 1.35 7.95 -51.93 -0.41 0.94 16 20 C -0.11 -1.07 5.29 -27.88 -0.15 -1.21 16 21 C 0.48 4.97 8.06 36.01 0.29 5.26 16 22 O -0.51 -6.71 14.74 -18.75 -0.28 -6.98 16 23 O -0.52 -4.18 13.42 -39.28 -0.53 -4.71 16 24 C 0.06 0.80 4.40 -3.83 -0.02 0.78 16 25 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 26 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 27 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 28 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 29 H 0.10 1.23 7.98 -51.92 -0.41 0.82 16 30 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 31 H 0.07 0.75 8.01 -51.93 -0.42 0.33 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.90 6.04 -51.93 -0.31 0.59 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.41 1.59 9.10 45.56 0.41 2.01 16 40 H 0.03 0.34 8.14 -51.92 -0.42 -0.09 16 41 H 0.09 1.53 6.06 -51.93 -0.31 1.22 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -34.81 335.63 -7.78 -42.58 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.50 Total: 6.04 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.92 Total: 1.21 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.61 Total: -49.87 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.72 Total: -24.19 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.08 Total: 19.17 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.81 -7.78 -42.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054300130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.719 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds