Wall clock time and date at job start Tue Mar 31 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00199 * 2 1 4 4 H 1.48500 * 109.46919 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47237 * 119.99677 * 3 2 1 6 6 H 1.48502 * 109.46756 * 239.99924 * 3 2 1 7 7 C 1.37873 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00136 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47206 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99857 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99980 * 179.97438 * 11 10 9 14 14 N 1.46893 * 109.47341 * 173.73443 * 13 11 10 15 15 C 1.46843 * 111.00203 * 169.40008 * 14 13 11 16 16 C 1.53043 * 109.52402 * 185.83956 * 15 14 13 17 17 C 1.53115 * 109.27788 * 300.81861 * 16 15 14 18 18 C 1.53119 * 109.16074 * 57.65660 * 17 16 15 19 19 H 1.09000 * 109.53829 * 62.30461 * 18 17 16 20 20 C 1.52999 * 109.51003 * 182.40434 * 18 17 16 21 21 C 1.50701 * 109.46668 * 294.80665 * 20 18 17 22 22 O 1.20821 * 120.00141 * 359.97438 * 21 20 18 23 23 O 1.34237 * 119.99951 * 180.02562 * 21 20 18 24 24 C 1.46846 * 111.00179 * 293.61384 * 14 13 11 25 25 H 0.96993 * 119.99755 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47215 * 299.99346 * 9 7 2 27 27 H 1.08997 * 109.47488 * 59.99764 * 9 7 2 28 28 H 0.97001 * 119.99990 * 359.97438 * 10 9 7 29 29 H 1.09009 * 109.47164 * 293.73350 * 13 11 10 30 30 H 1.09003 * 109.47249 * 53.72947 * 13 11 10 31 31 H 1.09003 * 109.46698 * 305.85575 * 15 14 13 32 32 H 1.08999 * 109.46377 * 65.82551 * 15 14 13 33 33 H 1.08999 * 109.50480 * 180.88031 * 16 15 14 34 34 H 1.09000 * 109.53685 * 60.78402 * 16 15 14 35 35 H 1.09001 * 109.52652 * 297.75283 * 17 16 15 36 36 H 1.09003 * 109.57598 * 177.58894 * 17 16 15 37 37 H 1.09005 * 109.46832 * 54.79354 * 20 18 17 38 38 H 1.08992 * 109.47704 * 174.80107 * 20 18 17 39 39 H 0.96693 * 117.00061 * 179.97438 * 23 21 20 40 40 H 1.09010 * 109.46083 * 294.17351 * 24 14 13 41 41 H 1.08999 * 109.46405 * 54.15148 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7537 -4.8834 0.0025 12 8 0.5613 -5.1049 0.0017 13 6 2.7329 -6.0288 0.0032 14 7 2.0048 -7.2955 0.1551 15 6 2.8879 -8.4428 -0.0898 16 6 2.0669 -9.7342 -0.0667 17 6 1.3832 -9.8743 1.2962 18 6 0.5072 -8.6440 1.5478 19 1 -0.2737 -8.5912 0.7893 20 6 -0.1330 -8.7474 2.9336 21 6 -1.0807 -9.9187 2.9628 22 8 -1.2292 -10.6005 1.9765 23 8 -1.7608 -10.2040 4.0845 24 6 1.3733 -7.3842 1.4779 25 1 -0.4849 -0.8400 -0.0004 26 1 0.6240 -2.5567 0.8904 27 1 0.6246 -2.5571 -0.8896 28 1 3.1567 -3.4355 0.0021 29 1 3.2835 -6.0368 -0.9376 30 1 3.4312 -5.9095 0.8317 31 1 3.3646 -8.3330 -1.0638 32 1 3.6525 -8.4847 0.6859 33 1 2.7252 -10.5870 -0.2329 34 1 1.3110 -9.6997 -0.8512 35 1 2.1398 -9.9487 2.0774 36 1 0.7630 -10.7707 1.3032 37 1 0.6450 -8.8908 3.6834 38 1 -0.6815 -7.8307 3.1498 39 1 -2.3571 -10.9645 4.0549 40 1 2.1451 -7.4310 2.2463 41 1 0.7498 -6.5054 1.6424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054300130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:20 Heat of formation + Delta-G solvation = -170.905969 kcal Electronic energy + Delta-G solvation = -22558.936209 eV Core-core repulsion = 19050.713388 eV Total energy + Delta-G solvation = -3508.222822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53768 -40.84191 -39.39574 -37.17585 -36.39165 -35.18661 -34.41127 -33.04992 -29.88713 -28.93878 -27.68098 -25.03558 -23.96527 -23.93476 -21.81388 -21.32892 -20.67331 -19.36320 -19.05798 -17.84412 -17.60869 -17.08676 -16.97156 -16.54024 -16.29880 -15.65874 -15.60241 -15.31124 -15.05105 -14.77063 -14.48622 -14.26300 -13.98975 -13.85069 -13.73009 -13.23983 -13.09191 -12.92558 -12.67843 -12.53945 -12.50082 -12.05041 -11.91333 -11.87857 -11.63617 -11.35083 -11.16852 -10.96994 -10.74637 -10.65266 -9.92104 -9.24429 -8.79011 -6.54658 1.20066 1.56354 1.64877 1.73285 1.83934 2.07636 2.29686 2.57765 3.03106 3.08783 3.66526 3.77137 3.84773 3.97957 4.17022 4.17576 4.30971 4.35102 4.42976 4.45380 4.56751 4.61416 4.68081 4.78282 4.81186 4.90346 4.97369 4.98965 5.05962 5.17595 5.33686 5.45127 5.48612 5.55751 5.65179 5.97449 6.09967 6.17373 6.32359 6.85975 6.99741 7.26554 7.46659 8.60210 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.003181 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.047657 B = 8800.176598 C = 9664.686234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.034 4.034 3 Si 1.130 2.870 4 H -0.287 1.287 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.629 4.629 8 H 0.077 0.923 9 C 0.256 3.744 10 N -0.707 5.707 11 C 0.493 3.507 12 O -0.584 6.584 13 C 0.052 3.948 14 N -0.546 5.546 15 C 0.058 3.942 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.067 4.067 19 H 0.053 0.947 20 C -0.110 4.110 21 C 0.486 3.514 22 O -0.544 6.544 23 O -0.515 6.515 24 C 0.064 3.936 25 H 0.253 0.747 26 H -0.018 1.018 27 H -0.021 1.021 28 H 0.409 0.591 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.133 0.867 38 H 0.109 0.891 39 H 0.426 0.574 40 H 0.053 0.947 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.801 -21.078 6.885 23.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.232 4.232 3 Si 0.949 3.051 4 H -0.213 1.213 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.667 4.667 8 H 0.095 0.905 9 C 0.132 3.868 10 N -0.358 5.358 11 C 0.280 3.720 12 O -0.464 6.464 13 C -0.078 4.078 14 N -0.271 5.271 15 C -0.069 4.069 16 C -0.150 4.150 17 C -0.154 4.154 18 C -0.086 4.086 19 H 0.072 0.928 20 C -0.148 4.148 21 C 0.330 3.670 22 O -0.435 6.435 23 O -0.329 6.329 24 C -0.064 4.064 25 H 0.062 0.938 26 H 0.000 1.000 27 H -0.003 1.003 28 H 0.245 0.755 29 H 0.145 0.855 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.127 0.873 39 H 0.288 0.712 40 H 0.071 0.929 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.615 -19.482 6.282 21.840 hybrid contribution -0.141 -1.917 0.326 1.950 sum 7.474 -21.399 6.608 23.610 Atomic orbital electron populations 1.70907 1.08326 1.29898 1.47528 1.27659 0.96339 1.07226 0.91995 0.82795 0.73921 0.69981 0.78424 1.21316 1.18691 1.18861 1.22444 0.95605 0.91765 1.56854 0.90497 1.18610 0.89365 0.85657 0.93144 1.46056 1.10975 1.05260 1.73500 1.21490 0.90166 0.84684 0.75651 1.90633 1.19241 1.85238 1.51257 1.21916 0.93478 0.87006 1.05442 1.61374 1.33385 1.01319 1.31053 1.22216 0.93573 0.89027 1.02093 1.21543 0.99337 0.96949 0.97199 1.21736 0.98518 0.97107 0.98010 1.20869 0.97562 0.95149 0.95004 0.92822 1.21430 0.98189 0.95116 1.00046 1.23605 0.78785 0.84966 0.79676 1.90696 1.64479 1.51748 1.36564 1.84513 1.56127 1.53291 1.38931 1.22071 0.97448 0.97812 0.89037 0.93759 0.99998 1.00290 0.75527 0.85486 0.89368 0.89505 0.92858 0.89134 0.93156 0.90526 0.91358 0.84868 0.87304 0.71197 0.92905 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 13.65 21.45 0.29 -57.70 16 2 C -0.03 -1.91 5.46 84.65 0.46 -1.44 16 3 Si 1.13 47.69 29.90 68.60 2.05 49.74 16 4 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.63 -34.42 9.28 25.60 0.24 -34.18 16 8 H 0.08 3.82 7.60 -2.91 -0.02 3.80 16 9 C 0.26 13.93 4.74 85.63 0.41 14.33 16 10 N -0.71 -29.41 5.55 -466.78 -2.59 -32.00 16 11 C 0.49 19.30 7.36 87.66 0.65 19.95 16 12 O -0.58 -28.61 14.71 -3.05 -0.04 -28.65 16 13 C 0.05 1.35 5.45 85.56 0.47 1.81 16 14 N -0.55 -14.45 4.35 -900.92 -3.92 -18.36 16 15 C 0.06 1.07 5.46 86.33 0.47 1.54 16 16 C -0.11 -2.12 6.09 30.65 0.19 -1.93 16 17 C -0.12 -2.26 5.00 30.67 0.15 -2.11 16 18 C -0.07 -1.58 2.00 -10.74 -0.02 -1.60 16 19 H 0.05 1.67 7.95 -2.39 -0.02 1.65 16 20 C -0.11 -2.04 5.29 29.85 0.16 -1.88 16 21 C 0.49 9.82 8.06 71.24 0.57 10.40 16 22 O -0.54 -14.48 14.74 21.98 0.32 -14.16 16 23 O -0.51 -7.62 13.42 -51.48 -0.69 -8.31 16 24 C 0.06 1.66 4.40 86.33 0.38 2.04 16 25 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 26 H -0.02 -1.08 8.01 -2.38 -0.02 -1.09 16 27 H -0.02 -1.27 8.01 -2.39 -0.02 -1.29 16 28 H 0.41 13.96 8.32 -92.71 -0.77 13.19 16 29 H 0.13 2.65 7.98 -2.38 -0.02 2.63 16 30 H 0.09 1.77 8.12 -2.39 -0.02 1.75 16 31 H 0.09 1.42 8.01 -2.39 -0.02 1.40 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.51 6.04 -2.39 -0.01 1.49 16 37 H 0.13 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.43 2.77 9.10 -74.06 -0.67 2.09 16 40 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.06 1.89 6.06 -2.39 -0.01 1.87 16 Total: -1.00 -79.85 335.63 -0.75 -80.60 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.30 Total: 21.92 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 4.12 Total: 6.92 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -6.21 Total: -108.06 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.41 Total: -51.12 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.05 Total: 49.74 kcal Total: -79.85 -0.75 -80.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054300130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.307 kcal (2) G-P(sol) polarization free energy of solvation -79.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds