Wall clock time and date at job start Tue Mar 31 2020 05:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.50248 * 2 1 4 4 O 1.20822 * 119.99958 * 120.07732 * 3 2 1 5 5 O 1.34234 * 120.00068 * 300.07923 * 3 2 1 6 6 C 1.53116 * 109.53351 * 239.90412 * 2 1 3 7 7 C 1.53121 * 109.16003 * 297.69155 * 6 2 1 8 8 C 1.53039 * 109.28070 * 302.34752 * 7 6 2 9 9 N 1.46855 * 109.51877 * 59.17689 * 8 7 6 10 10 C 1.46900 * 110.99639 * 174.16074 * 9 8 7 11 11 C 1.50697 * 109.47275 * 294.21022 * 10 9 8 12 12 O 1.21282 * 120.00054 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00000 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99886 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46951 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00302 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00112 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99656 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00258 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47103 * 89.99904 * 19 17 15 21 21 H 1.48495 * 109.47064 * 210.00014 * 19 17 15 22 22 H 1.48503 * 109.46880 * 330.00157 * 19 17 15 23 23 C 1.46837 * 111.19933 * 298.25784 * 9 8 7 24 24 H 1.09003 * 109.47368 * 59.99853 * 1 2 3 25 25 H 1.08998 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47421 * 299.99934 * 1 2 3 27 27 H 0.96698 * 117.00153 * 179.97438 * 5 3 2 28 28 H 1.09003 * 109.52912 * 57.59692 * 6 2 1 29 29 H 1.09005 * 109.52186 * 177.78941 * 6 2 1 30 30 H 1.09001 * 109.50733 * 182.40806 * 7 6 2 31 31 H 1.09001 * 109.53894 * 62.30988 * 7 6 2 32 32 H 1.09004 * 109.46295 * 299.16605 * 8 7 6 33 33 H 1.08995 * 109.45713 * 179.18787 * 8 7 6 34 34 H 1.09003 * 109.46989 * 54.21335 * 10 9 8 35 35 H 1.09000 * 109.47318 * 174.20929 * 10 9 8 36 36 H 0.96995 * 120.00294 * 0.02562 * 13 11 10 37 37 H 1.09003 * 109.47355 * 300.00197 * 14 13 11 38 38 H 1.08998 * 109.47445 * 60.00364 * 14 13 11 39 39 H 0.96998 * 120.00077 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.46638 * 301.72843 * 23 9 8 41 41 H 1.09006 * 109.45777 * 181.75254 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 8 2.7291 1.8149 0.9055 5 8 1.7080 2.2477 -1.0059 6 6 2.0420 -0.7236 -1.2485 7 6 1.5765 -2.1819 -1.2105 8 6 2.0861 -2.8417 0.0729 9 7 1.5683 -2.1132 1.2381 10 6 1.9230 -2.7990 2.4879 11 6 1.2185 -4.1298 2.5480 12 8 0.4928 -4.4734 1.6391 13 7 1.3958 -4.9387 3.6115 14 6 0.7113 -6.2327 3.6697 15 6 1.0751 -6.9361 4.9518 16 1 1.7485 -6.4661 5.6534 17 6 0.5476 -8.1793 5.2298 18 7 -0.2728 -8.7514 4.3757 19 14 0.9980 -9.0509 6.8194 20 1 0.0290 -8.6769 7.8807 21 1 0.9569 -10.5201 6.6070 22 1 2.3660 -8.6487 7.2340 23 6 2.0409 -0.7230 1.2483 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.0540 3.1496 -0.9620 28 1 1.6450 -0.2377 -2.1398 29 1 3.1313 -0.6893 -1.2684 30 1 1.9737 -2.7134 -2.0753 31 1 0.4873 -2.2175 -1.2302 32 1 3.1759 -2.8187 0.0851 33 1 1.7443 -3.8760 0.1098 34 1 3.0010 -2.9566 2.5224 35 1 1.6178 -2.1877 3.3371 36 1 1.9765 -4.6641 4.3383 37 1 -0.3668 -6.0754 3.6353 38 1 1.0166 -6.8438 2.8204 39 1 -0.6437 -9.6261 4.5711 40 1 3.1308 -0.7100 1.2550 41 1 1.6662 -0.2186 2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062876798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:19 Heat of formation + Delta-G solvation = -133.191271 kcal Electronic energy + Delta-G solvation = -22858.425130 eV Core-core repulsion = 19351.837740 eV Total energy + Delta-G solvation = -3506.587390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07867 -39.40763 -38.09899 -36.38482 -34.48113 -33.93695 -32.34289 -31.83546 -28.49117 -27.10350 -26.45941 -24.70346 -23.48601 -22.26485 -21.50207 -19.64207 -19.02778 -18.11371 -17.32423 -16.83388 -15.94720 -15.79997 -15.38770 -15.26118 -14.93237 -14.50369 -14.40405 -13.97860 -13.92247 -13.57339 -13.30393 -12.76305 -12.64942 -12.27485 -12.14256 -11.96328 -11.86480 -11.81438 -11.51106 -11.30413 -11.03288 -10.97078 -10.85151 -10.80578 -10.54173 -10.34955 -10.27496 -9.39461 -8.99703 -8.72825 -8.23377 -7.84769 -6.16772 -4.23546 1.94196 2.66909 3.24166 3.30345 3.32590 3.38983 3.72537 4.24985 4.28455 4.40974 4.53246 4.64825 4.97954 5.06047 5.18002 5.19367 5.32355 5.35647 5.42929 5.46597 5.57922 5.60899 5.63544 5.68447 5.77967 5.80883 5.90274 6.09903 6.20224 6.25339 6.36315 6.94969 7.08643 7.32677 7.45848 7.52592 7.62006 7.67902 7.97460 8.64338 8.79318 9.12973 9.43296 10.93415 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041312 B = 0.002999 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.601293 B = 9334.200226 C = 9664.545637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 C 0.490 3.510 4 O -0.517 6.517 5 O -0.512 6.512 6 C -0.109 4.109 7 C -0.113 4.113 8 C 0.045 3.955 9 N -0.514 5.514 10 C 0.037 3.963 11 C 0.500 3.500 12 O -0.538 6.538 13 N -0.715 5.715 14 C 0.252 3.748 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.076 3.924 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.407 0.593 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.026 0.974 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.390 0.610 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.042 0.958 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.442 19.371 -10.240 22.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.046 4.046 3 C 0.332 3.668 4 O -0.404 6.404 5 O -0.324 6.324 6 C -0.146 4.146 7 C -0.151 4.151 8 C -0.082 4.082 9 N -0.239 5.239 10 C -0.095 4.095 11 C 0.284 3.716 12 O -0.416 6.416 13 N -0.364 5.364 14 C 0.131 3.869 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.053 4.053 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.266 0.734 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.222 0.778 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.323 18.623 -10.724 21.920 hybrid contribution 1.684 0.301 1.431 2.230 sum 6.006 18.924 -9.293 21.921 Atomic orbital electron populations 1.21832 0.90416 1.05045 1.01919 1.20481 0.99137 0.86636 0.98370 1.23530 0.76437 0.88493 0.78350 1.90715 1.35987 1.77285 1.36461 1.84544 1.72163 1.27308 1.48358 1.21672 1.00562 0.96699 0.95695 1.21597 1.02722 0.93577 0.97195 1.22369 0.96155 1.00469 0.89255 1.61462 1.60046 1.00535 1.01836 1.21988 0.98714 0.95230 0.93523 1.20246 0.82701 0.85461 0.83225 1.90621 1.38527 1.75037 1.37452 1.46456 1.48491 1.20894 1.20555 1.19075 0.92762 0.77844 0.97205 1.21236 1.29505 1.03060 1.04363 0.91935 1.24953 0.94738 0.97064 0.97268 1.69974 1.30504 1.16317 1.35500 0.86421 0.78856 0.78735 0.82932 1.20457 1.21016 1.19767 1.21907 0.97840 0.89115 0.96402 0.91947 0.88786 0.92421 0.73411 0.90388 0.91896 0.90944 0.90015 0.95532 0.87752 0.92310 0.88209 0.77811 0.95532 0.95624 0.92455 0.93997 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.97 37.16 0.30 -1.06 16 2 C -0.04 -0.46 0.71 -155.58 -0.11 -0.57 16 3 C 0.49 5.08 6.93 36.01 0.25 5.33 16 4 O -0.52 -6.79 16.74 -18.75 -0.31 -7.11 16 5 O -0.51 -3.87 13.26 -39.27 -0.52 -4.39 16 6 C -0.11 -1.02 4.72 -26.61 -0.13 -1.14 16 7 C -0.11 -1.21 5.74 -26.65 -0.15 -1.37 16 8 C 0.04 0.60 5.11 -3.83 -0.02 0.58 16 9 N -0.51 -7.00 3.68 -236.11 -0.87 -7.87 16 10 C 0.04 0.52 5.45 -4.98 -0.03 0.49 16 11 C 0.50 9.61 7.50 -10.98 -0.08 9.53 16 12 O -0.54 -12.32 14.32 5.56 0.08 -12.24 16 13 N -0.71 -14.69 5.55 -61.47 -0.34 -15.03 16 14 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 15 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 19 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 C 0.08 0.89 3.47 -3.84 -0.01 0.88 16 24 H 0.06 0.55 8.11 -51.93 -0.42 0.12 16 25 H 0.09 1.09 6.01 -51.93 -0.31 0.78 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.41 1.36 9.10 45.56 0.41 1.78 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.94 6.59 -51.93 -0.34 0.59 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 1.72 5.78 -51.93 -0.30 1.42 16 34 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 35 H 0.10 1.23 7.99 -51.93 -0.41 0.81 16 36 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 41 H 0.08 0.99 7.99 -51.93 -0.41 0.58 16 LS Contribution 334.46 15.07 5.04 5.04 Total: -1.00 -33.28 334.46 -7.11 -40.39 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.46 Total: 4.77 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -0.43 Total: 5.92 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.47 Total: -48.14 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.75 Total: -23.73 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.28 -7.11 -40.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062876798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.806 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds