Wall clock time and date at job start Tue Mar 31 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.50248 * 2 1 4 4 O 1.20822 * 119.99958 * 120.07732 * 3 2 1 5 5 O 1.34234 * 120.00068 * 300.07923 * 3 2 1 6 6 C 1.53116 * 109.53351 * 239.90412 * 2 1 3 7 7 C 1.53121 * 109.16003 * 297.69155 * 6 2 1 8 8 C 1.53039 * 109.28070 * 302.34752 * 7 6 2 9 9 N 1.46855 * 109.51877 * 59.17689 * 8 7 6 10 10 C 1.46900 * 110.99639 * 174.16074 * 9 8 7 11 11 C 1.50697 * 109.47275 * 294.21022 * 10 9 8 12 12 O 1.21282 * 120.00054 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00000 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99886 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46951 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00302 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00112 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99656 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00258 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47103 * 89.99904 * 19 17 15 21 21 H 1.48495 * 109.47064 * 210.00014 * 19 17 15 22 22 H 1.48503 * 109.46880 * 330.00157 * 19 17 15 23 23 C 1.46837 * 111.19933 * 298.25784 * 9 8 7 24 24 H 1.09003 * 109.47368 * 59.99853 * 1 2 3 25 25 H 1.08998 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47421 * 299.99934 * 1 2 3 27 27 H 0.96698 * 117.00153 * 179.97438 * 5 3 2 28 28 H 1.09003 * 109.52912 * 57.59692 * 6 2 1 29 29 H 1.09005 * 109.52186 * 177.78941 * 6 2 1 30 30 H 1.09001 * 109.50733 * 182.40806 * 7 6 2 31 31 H 1.09001 * 109.53894 * 62.30988 * 7 6 2 32 32 H 1.09004 * 109.46295 * 299.16605 * 8 7 6 33 33 H 1.08995 * 109.45713 * 179.18787 * 8 7 6 34 34 H 1.09003 * 109.46989 * 54.21335 * 10 9 8 35 35 H 1.09000 * 109.47318 * 174.20929 * 10 9 8 36 36 H 0.96995 * 120.00294 * 0.02562 * 13 11 10 37 37 H 1.09003 * 109.47355 * 300.00197 * 14 13 11 38 38 H 1.08998 * 109.47445 * 60.00364 * 14 13 11 39 39 H 0.96998 * 120.00077 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.46638 * 301.72843 * 23 9 8 41 41 H 1.09006 * 109.45777 * 181.75254 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 8 2.7291 1.8149 0.9055 5 8 1.7080 2.2477 -1.0059 6 6 2.0420 -0.7236 -1.2485 7 6 1.5765 -2.1819 -1.2105 8 6 2.0861 -2.8417 0.0729 9 7 1.5683 -2.1132 1.2381 10 6 1.9230 -2.7990 2.4879 11 6 1.2185 -4.1298 2.5480 12 8 0.4928 -4.4734 1.6391 13 7 1.3958 -4.9387 3.6115 14 6 0.7113 -6.2327 3.6697 15 6 1.0751 -6.9361 4.9518 16 1 1.7485 -6.4661 5.6534 17 6 0.5476 -8.1793 5.2298 18 7 -0.2728 -8.7514 4.3757 19 14 0.9980 -9.0509 6.8194 20 1 0.0290 -8.6769 7.8807 21 1 0.9569 -10.5201 6.6070 22 1 2.3660 -8.6487 7.2340 23 6 2.0409 -0.7230 1.2483 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.0540 3.1496 -0.9620 28 1 1.6450 -0.2377 -2.1398 29 1 3.1313 -0.6893 -1.2684 30 1 1.9737 -2.7134 -2.0753 31 1 0.4873 -2.2175 -1.2302 32 1 3.1759 -2.8187 0.0851 33 1 1.7443 -3.8760 0.1098 34 1 3.0010 -2.9566 2.5224 35 1 1.6178 -2.1877 3.3371 36 1 1.9765 -4.6641 4.3383 37 1 -0.3668 -6.0754 3.6353 38 1 1.0166 -6.8438 2.8204 39 1 -0.6437 -9.6261 4.5711 40 1 3.1308 -0.7100 1.2550 41 1 1.6662 -0.2186 2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062876798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:18 Heat of formation + Delta-G solvation = -158.891722 kcal Electronic energy + Delta-G solvation = -22859.539585 eV Core-core repulsion = 19351.837740 eV Total energy + Delta-G solvation = -3507.701845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.91950 -40.70217 -39.31733 -37.12143 -36.14811 -35.21690 -34.31979 -32.76305 -30.11634 -28.19075 -27.82951 -25.55323 -24.94947 -23.76312 -22.45821 -21.28905 -19.88607 -18.96966 -18.83471 -17.94134 -17.48675 -16.97055 -16.74345 -16.57063 -16.18836 -15.95005 -15.55242 -15.22266 -15.01052 -14.55944 -14.30630 -14.25717 -14.03866 -13.88117 -13.51848 -13.12983 -12.90390 -12.83849 -12.73382 -12.65403 -12.55693 -12.22505 -12.17544 -11.97981 -11.69174 -11.47170 -11.41472 -11.20421 -10.78625 -10.57231 -9.77056 -9.28874 -8.28227 -6.44439 1.15952 1.43578 1.45749 1.56858 1.82961 1.90718 2.32654 2.53090 3.06657 3.08830 3.44858 3.69508 3.84788 3.94830 4.13571 4.22006 4.30567 4.38588 4.40344 4.55877 4.58216 4.65049 4.71953 4.86371 4.98402 5.00103 5.03332 5.13813 5.17286 5.27541 5.31934 5.51143 5.51597 5.57854 5.72576 5.86719 5.93153 6.07740 6.67094 6.97897 6.98347 7.25163 7.55921 8.83898 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041312 B = 0.002999 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.601293 B = 9334.200226 C = 9664.545637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.047 4.047 3 C 0.500 3.500 4 O -0.547 6.547 5 O -0.504 6.504 6 C -0.101 4.101 7 C -0.109 4.109 8 C 0.045 3.955 9 N -0.528 5.528 10 C 0.049 3.951 11 C 0.497 3.503 12 O -0.579 6.579 13 N -0.711 5.711 14 C 0.270 3.730 15 C -0.556 4.556 16 H 0.083 0.917 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.983 3.017 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.256 1.256 23 C 0.079 3.921 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.428 0.572 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.407 0.593 37 H -0.014 1.014 38 H -0.013 1.013 39 H 0.268 0.732 40 H 0.044 0.956 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.929 21.191 -9.639 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.048 4.048 3 C 0.343 3.657 4 O -0.438 6.438 5 O -0.317 6.317 6 C -0.138 4.138 7 C -0.146 4.146 8 C -0.082 4.082 9 N -0.252 5.252 10 C -0.082 4.082 11 C 0.284 3.716 12 O -0.459 6.459 13 N -0.362 5.362 14 C 0.147 3.853 15 C -0.594 4.594 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.807 3.193 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.180 1.180 23 C -0.048 4.048 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.290 0.710 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.242 0.758 37 H 0.004 0.996 38 H 0.005 0.995 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.838 20.511 -10.133 23.611 hybrid contribution 1.178 -0.206 1.136 1.649 sum 7.015 20.305 -8.997 23.291 Atomic orbital electron populations 1.21762 0.90307 1.03983 1.02622 1.20459 0.99167 0.87063 0.98132 1.23322 0.75661 0.88496 0.78210 1.90713 1.37491 1.77848 1.37727 1.84487 1.71721 1.28551 1.46933 1.21628 1.00929 0.95358 0.95894 1.21555 1.02050 0.94735 0.96296 1.22292 0.96663 0.98734 0.90540 1.61416 1.60784 1.01501 1.01532 1.21911 0.99209 0.92152 0.94944 1.21206 0.81918 0.86778 0.81737 1.90610 1.40312 1.76219 1.38769 1.46192 1.48657 1.19384 1.21960 1.18482 0.90819 0.79983 0.96017 1.21635 1.29679 1.03436 1.04607 0.89913 1.26052 0.94352 0.98006 1.01184 1.70136 1.31903 1.16898 1.38007 0.85177 0.79318 0.77006 0.77845 1.19659 1.20978 1.17961 1.21884 0.97900 0.87720 0.97344 0.90410 0.90672 0.92583 0.71028 0.88619 0.91258 0.89582 0.91102 0.94507 0.91549 0.89850 0.85717 0.75757 0.99583 0.99492 0.92280 0.93814 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 7.97 71.98 0.57 -1.84 16 2 C -0.05 -0.87 0.71 -52.88 -0.04 -0.91 16 3 C 0.50 9.14 6.93 71.24 0.49 9.63 16 4 O -0.55 -13.27 16.74 21.98 0.37 -12.90 16 5 O -0.50 -6.03 13.26 -51.46 -0.68 -6.71 16 6 C -0.10 -1.65 4.72 30.67 0.14 -1.51 16 7 C -0.11 -2.23 5.74 30.65 0.18 -2.06 16 8 C 0.05 1.19 5.11 86.32 0.44 1.64 16 9 N -0.53 -13.94 3.68 -900.93 -3.32 -17.25 16 10 C 0.05 1.31 5.45 85.56 0.47 1.77 16 11 C 0.50 19.45 7.50 87.66 0.66 20.11 16 12 O -0.58 -27.80 14.32 -3.04 -0.04 -27.84 16 13 N -0.71 -29.67 5.55 -466.78 -2.59 -32.26 16 14 C 0.27 14.76 5.43 85.63 0.46 15.23 16 15 C -0.56 -30.19 9.28 25.60 0.24 -29.95 16 16 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 17 C 0.00 0.20 5.46 84.66 0.46 0.66 16 18 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 19 Si 0.98 42.32 29.54 68.60 2.03 44.35 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 C 0.08 1.73 3.47 86.33 0.30 2.03 16 24 H 0.08 1.19 8.11 -2.39 -0.02 1.17 16 25 H 0.07 1.72 6.01 -2.39 -0.01 1.70 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.43 1.49 9.10 -74.06 -0.67 0.82 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.62 6.59 -2.39 -0.02 1.60 16 32 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 2.28 5.78 -2.39 -0.01 2.27 16 34 H 0.08 1.89 8.12 -2.39 -0.02 1.87 16 35 H 0.12 2.78 7.99 -2.39 -0.02 2.76 16 36 H 0.41 13.97 8.32 -92.71 -0.77 13.20 16 37 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 39 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.04 0.95 8.08 -2.39 -0.02 0.93 16 41 H 0.08 1.84 7.99 -2.38 -0.02 1.82 16 Total: -1.00 -74.75 334.46 0.03 -74.72 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -0.39 Total: 19.00 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 4.38 Total: 14.80 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -5.62 Total: -105.42 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -0.36 Total: -47.45 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -74.75 0.03 -74.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062876798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.173 kcal (2) G-P(sol) polarization free energy of solvation -74.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds