Wall clock time and date at job start Tue Mar 31 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.50403 * 2 1 4 4 O 1.20824 * 119.99966 * 239.99832 * 3 2 1 5 5 O 1.34231 * 120.00289 * 59.99798 * 3 2 1 6 6 C 1.53119 * 109.49865 * 120.07662 * 2 1 3 7 7 C 1.53129 * 109.15735 * 62.36766 * 6 2 1 8 8 C 1.53037 * 109.31020 * 57.59511 * 7 6 2 9 9 N 1.46851 * 109.52119 * 300.83586 * 8 7 6 10 10 C 1.46895 * 110.99911 * 185.83936 * 9 8 7 11 11 C 1.50698 * 109.47060 * 169.43383 * 10 9 8 12 12 O 1.21283 * 120.00345 * 353.78300 * 11 10 9 13 13 N 1.34778 * 120.00351 * 173.78492 * 11 10 9 14 14 C 1.46495 * 120.00309 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47093 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99809 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99816 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00308 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99838 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47135 * 60.00012 * 19 17 15 21 21 H 1.48504 * 109.46830 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47086 * 299.99920 * 19 17 15 23 23 C 1.46853 * 111.19463 * 61.74734 * 9 8 7 24 24 H 1.08997 * 109.47164 * 59.99994 * 1 2 3 25 25 H 1.09003 * 109.47470 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47502 * 300.00483 * 1 2 3 27 27 H 0.96702 * 117.00655 * 180.02562 * 5 3 2 28 28 H 1.08997 * 109.51980 * 182.22634 * 6 2 1 29 29 H 1.08999 * 109.52703 * 302.42107 * 6 2 1 30 30 H 1.08997 * 109.46893 * 297.64572 * 7 6 2 31 31 H 1.08997 * 109.53345 * 177.57064 * 7 6 2 32 32 H 1.09001 * 109.45881 * 180.82926 * 8 7 6 33 33 H 1.08994 * 109.46731 * 60.85708 * 8 7 6 34 34 H 1.08994 * 109.47682 * 289.43731 * 10 9 8 35 35 H 1.09005 * 109.46863 * 49.44184 * 10 9 8 36 36 H 0.96997 * 119.99699 * 359.97438 * 13 11 10 37 37 H 1.08995 * 109.47094 * 299.99800 * 14 13 11 38 38 H 1.08998 * 109.47246 * 60.00117 * 14 13 11 39 39 H 0.96997 * 120.00471 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.45804 * 178.24169 * 23 9 8 41 41 H 1.09000 * 109.45330 * 58.26878 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 8 2.7280 1.8152 -0.9062 5 8 1.7093 2.2472 1.0067 6 6 2.0411 -0.7234 1.2490 7 6 1.5764 -2.1819 1.2105 8 6 2.0861 -2.8417 -0.0728 9 7 1.5683 -2.1134 -1.2381 10 6 1.9231 -2.7991 -2.4878 11 6 1.1662 -2.1785 -3.6337 12 8 0.3236 -1.3335 -3.4171 13 7 1.4255 -2.5625 -4.8993 14 6 0.6902 -1.9588 -6.0132 15 6 1.1660 -2.5570 -7.3121 16 1 1.9385 -3.3116 -7.3081 17 6 0.6142 -2.1415 -8.5054 18 7 -0.3269 -1.2229 -8.5102 19 14 1.2035 -2.8834 -10.1153 20 1 0.9658 -4.3491 -10.1012 21 1 0.4581 -2.2713 -11.2445 22 1 2.6554 -2.6189 -10.2801 23 6 2.0410 -0.7230 -1.2483 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.0553 3.1492 0.9627 28 1 3.1303 -0.6892 1.2696 29 1 1.6435 -0.2372 2.1399 30 1 0.4872 -2.2168 1.2300 31 1 1.9731 -2.7138 2.0753 32 1 1.7443 -3.8761 -0.1099 33 1 3.1758 -2.8188 -0.0850 34 1 2.9942 -2.7014 -2.6645 35 1 1.6625 -3.8546 -2.4096 36 1 2.0996 -3.2381 -5.0726 37 1 -0.3756 -2.1526 -5.8925 38 1 0.8650 -0.8830 -6.0235 39 1 -0.7148 -0.9303 -9.3497 40 1 1.6664 -0.2186 -2.1390 41 1 3.1309 -0.7102 -1.2549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062876799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:22 Heat of formation + Delta-G solvation = -132.933653 kcal Electronic energy + Delta-G solvation = -23159.680356 eV Core-core repulsion = 19653.104137 eV Total energy + Delta-G solvation = -3506.576218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93584 -39.31797 -38.04921 -36.19455 -34.41985 -33.98644 -32.28318 -31.83484 -28.42033 -27.00067 -26.44371 -24.63309 -23.56049 -22.18522 -21.41866 -19.61863 -18.97047 -17.92470 -17.18551 -16.87134 -15.80764 -15.71773 -15.38084 -15.24323 -14.92670 -14.58007 -14.32596 -14.05584 -13.70231 -13.45428 -13.17886 -12.83464 -12.46045 -12.36090 -12.09819 -11.87840 -11.78087 -11.64127 -11.34015 -11.26353 -11.09157 -10.97295 -10.85986 -10.77716 -10.49788 -10.29387 -10.22557 -9.38465 -8.97679 -8.70057 -8.23791 -7.81812 -6.14086 -4.21072 2.15021 2.84659 3.26741 3.31440 3.32913 3.42867 3.71142 4.27448 4.39160 4.46863 4.59290 4.68878 4.94083 5.05504 5.21782 5.23422 5.33389 5.36339 5.38150 5.51953 5.53832 5.64198 5.70025 5.71550 5.81539 5.90929 6.00078 6.03875 6.21989 6.38883 6.47403 6.92534 7.07116 7.35741 7.48830 7.55865 7.70252 7.81713 8.00183 8.67274 8.81955 9.16460 9.45689 10.96079 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025851 B = 0.003584 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.880862 B = 7809.558960 C = 8412.251341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.042 4.042 3 C 0.487 3.513 4 O -0.511 6.511 5 O -0.515 6.515 6 C -0.109 4.109 7 C -0.115 4.115 8 C 0.051 3.949 9 N -0.515 5.515 10 C 0.037 3.963 11 C 0.497 3.503 12 O -0.536 6.536 13 N -0.715 5.715 14 C 0.252 3.748 15 C -0.544 4.544 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.073 3.927 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.407 0.593 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.389 0.611 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.104 0.896 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 -1.107 21.571 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.044 4.044 3 C 0.329 3.671 4 O -0.398 6.398 5 O -0.326 6.326 6 C -0.146 4.146 7 C -0.153 4.153 8 C -0.077 4.077 9 N -0.239 5.239 10 C -0.094 4.094 11 C 0.281 3.719 12 O -0.414 6.414 13 N -0.365 5.365 14 C 0.131 3.869 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.055 4.055 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.265 0.735 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.221 0.779 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.610 -0.664 21.366 21.868 hybrid contribution 1.814 -0.033 -1.232 2.193 sum 6.424 -0.696 20.134 21.146 Atomic orbital electron populations 1.21764 0.90256 1.04597 1.02056 1.20451 0.99318 0.86745 0.97843 1.23502 0.76629 0.88548 0.78437 1.90742 1.35797 1.77140 1.36075 1.84525 1.72430 1.27303 1.48384 1.21652 1.00567 0.96242 0.96189 1.21614 1.02579 0.94367 0.96705 1.22189 0.97160 0.98075 0.90305 1.61444 1.60004 1.01445 1.01020 1.22003 0.98391 0.99475 0.89520 1.20285 0.84159 0.83481 0.84015 1.90644 1.33716 1.32535 1.84463 1.46452 1.41166 1.42367 1.06485 1.19069 0.92021 0.93928 0.81873 1.21197 1.22403 1.23746 0.90874 0.91995 1.24946 0.94755 0.94897 0.99377 1.69964 1.25788 1.29155 1.27380 0.86482 0.78825 0.79301 0.82337 1.20071 1.21074 1.20099 1.22035 0.96914 0.88728 0.97814 0.91679 0.89404 0.92421 0.73483 0.91918 0.90346 0.90111 0.90935 0.90224 0.94861 0.92470 0.87973 0.77884 0.95541 0.95641 0.92409 0.87792 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 7.97 37.16 0.30 -1.33 16 2 C -0.04 -0.52 0.71 -155.58 -0.11 -0.63 16 3 C 0.49 6.43 6.93 36.00 0.25 6.67 16 4 O -0.51 -8.55 16.74 -18.75 -0.31 -8.86 16 5 O -0.51 -4.98 13.26 -39.26 -0.52 -5.50 16 6 C -0.11 -1.02 4.72 -26.60 -0.13 -1.15 16 7 C -0.12 -0.97 5.74 -26.65 -0.15 -1.12 16 8 C 0.05 0.50 5.46 -3.83 -0.02 0.48 16 9 N -0.51 -6.99 3.63 -236.11 -0.86 -7.85 16 10 C 0.04 0.52 5.45 -4.98 -0.03 0.50 16 11 C 0.50 9.83 7.36 -10.99 -0.08 9.75 16 12 O -0.54 -12.69 14.70 5.55 0.08 -12.61 16 13 N -0.72 -15.05 5.55 -61.47 -0.34 -15.39 16 14 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 15 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 C 0.07 1.09 3.13 -3.83 -0.01 1.08 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.09 1.12 6.01 -51.93 -0.31 0.81 16 26 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 27 H 0.41 2.25 9.10 45.56 0.41 2.67 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.71 6.58 -51.93 -0.34 0.37 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.69 8.01 -51.93 -0.42 0.27 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.10 1.19 7.98 -51.93 -0.41 0.78 16 36 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.10 1.99 6.03 -51.93 -0.31 1.67 16 41 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -34.55 334.90 -7.10 -41.65 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.48 Total: 5.71 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.43 Total: 7.45 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.46 Total: -48.86 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.75 Total: -26.98 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.55 -7.10 -41.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062876799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.288 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds