Wall clock time and date at job start Tue Mar 31 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.47371 * 2 1 4 4 C 1.50702 * 109.49991 * 300.07485 * 3 2 1 5 5 O 1.20825 * 119.99929 * 239.91928 * 4 3 2 6 6 O 1.34230 * 120.00152 * 59.92450 * 4 3 2 7 7 C 1.53114 * 109.53668 * 60.17302 * 3 2 1 8 8 C 1.53123 * 109.16198 * 177.61433 * 7 3 2 9 9 C 1.53035 * 109.27774 * 302.35270 * 8 7 3 10 10 N 1.46846 * 109.52744 * 59.17321 * 9 8 7 11 11 C 1.46904 * 110.99942 * 174.16069 * 10 9 8 12 12 C 1.50699 * 109.46940 * 66.04866 * 11 10 9 13 13 O 1.21294 * 120.00238 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00060 * 179.97438 * 12 11 10 15 15 C 1.37102 * 120.00369 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99884 * 359.97438 * 15 14 12 17 17 C 1.38946 * 120.00409 * 180.02562 * 15 14 12 18 18 N 1.31413 * 120.00215 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99676 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47058 * 90.00306 * 19 17 15 21 21 H 1.48498 * 109.47032 * 210.00114 * 19 17 15 22 22 H 1.48500 * 109.47125 * 330.00101 * 19 17 15 23 23 C 1.46844 * 111.19783 * 298.26158 * 10 9 8 24 24 H 1.09000 * 109.46779 * 300.00742 * 1 2 3 25 25 H 1.09000 * 109.46507 * 60.00117 * 1 2 3 26 26 H 1.08996 * 109.47116 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46779 * 239.99258 * 2 1 3 28 28 H 1.09000 * 109.46507 * 119.99883 * 2 1 3 29 29 H 0.96702 * 117.00443 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.52528 * 297.52073 * 7 3 2 31 31 H 1.09001 * 109.52673 * 57.64776 * 7 3 2 32 32 H 1.08995 * 109.51026 * 182.40543 * 8 7 3 33 33 H 1.09011 * 109.49940 * 62.28508 * 8 7 3 34 34 H 1.09008 * 109.45841 * 299.15478 * 9 8 7 35 35 H 1.09003 * 109.46290 * 179.19461 * 9 8 7 36 36 H 1.08999 * 109.47060 * 186.04709 * 11 10 9 37 37 H 1.08999 * 109.47352 * 306.05023 * 11 10 9 38 38 H 0.96999 * 120.00008 * 0.02562 * 14 12 11 39 39 H 0.96998 * 119.99542 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.46271 * 181.75698 * 23 10 9 41 41 H 1.09008 * 109.46154 * 301.73497 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5367 2.1540 -1.2293 5 8 2.3211 2.6149 -2.0244 6 8 0.2168 2.2759 -1.4410 7 6 1.5342 2.1644 1.2518 8 6 2.0980 3.5879 1.2735 9 6 3.6267 3.5265 1.2365 10 7 4.0605 2.8273 0.0202 11 6 5.5224 2.8704 -0.1187 12 6 6.1563 2.0783 0.9956 13 8 5.4591 1.5320 1.8243 14 7 7.4981 1.9768 1.0715 15 6 8.0749 1.2558 2.0849 16 1 7.4540 0.7694 2.8228 17 6 9.4582 1.1516 2.1634 18 7 10.0111 0.4609 3.1352 19 14 10.5321 1.9935 0.8876 20 1 10.8583 3.3682 1.3446 21 1 11.7873 1.2203 0.7092 22 1 9.8044 2.0611 -0.4051 23 6 3.5705 1.4432 0.0000 24 1 -0.3633 0.5140 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 -0.0582 2.7407 -2.2432 30 1 0.4451 2.2043 1.2342 31 1 1.8647 1.6273 2.1409 32 1 1.7760 4.0932 2.1840 33 1 1.7347 4.1364 0.4042 34 1 3.9898 2.9899 2.1131 35 1 4.0310 4.5388 1.2373 36 1 5.8089 2.4407 -1.0785 37 1 5.8619 3.9049 -0.0678 38 1 8.0557 2.4139 0.4091 39 1 10.9768 0.3879 3.1897 40 1 3.9339 0.9423 -0.8973 41 1 3.9338 0.9164 0.8824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062877662.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:53 Heat of formation + Delta-G solvation = -120.173434 kcal Electronic energy + Delta-G solvation = -24016.368194 eV Core-core repulsion = 20510.345300 eV Total energy + Delta-G solvation = -3506.022894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90758 -39.10931 -37.45685 -35.92785 -34.89756 -33.85428 -32.20892 -31.71454 -29.47182 -27.45802 -24.80022 -24.40419 -23.38721 -22.51643 -20.81526 -19.42608 -19.35943 -18.24048 -17.65015 -16.31148 -16.00828 -15.54440 -15.32970 -14.92591 -14.83877 -14.10560 -13.91538 -13.86943 -13.67132 -13.27230 -13.16640 -12.87713 -12.52732 -12.27334 -12.14948 -11.95367 -11.58341 -11.44977 -11.27195 -11.14134 -10.98836 -10.76504 -10.68942 -10.59888 -10.20485 -10.10151 -10.04443 -9.98989 -9.54645 -9.24760 -8.21893 -7.40866 -6.36829 -3.87849 2.50358 3.00966 3.05159 3.13301 3.17540 3.65258 4.06457 4.21915 4.61471 4.71690 4.78608 4.94709 5.16863 5.20262 5.26210 5.33483 5.44084 5.59170 5.69708 5.75268 5.78277 5.84952 5.90318 5.93846 5.99174 6.02936 6.08438 6.16189 6.18552 6.32777 6.40774 6.50139 6.60252 6.69637 7.33583 7.46723 7.52453 8.09909 8.15093 8.52838 8.89021 9.37310 9.75689 10.75958 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.004309 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.525598 B = 6495.743470 C = 6688.230832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.114 4.114 3 C -0.039 4.039 4 C 0.486 3.514 5 O -0.488 6.488 6 O -0.519 6.519 7 C -0.108 4.108 8 C -0.116 4.116 9 C 0.037 3.963 10 N -0.502 5.502 11 C 0.042 3.958 12 C 0.415 3.585 13 O -0.578 6.578 14 N -0.583 5.583 15 C -0.307 4.307 16 H 0.119 0.881 17 C 0.043 3.957 18 N -0.879 5.879 19 Si 0.879 3.121 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.268 1.268 23 C 0.053 3.947 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.396 0.604 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.372 0.628 39 H 0.274 0.726 40 H 0.069 0.931 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.927 4.161 -8.276 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.152 4.152 3 C -0.040 4.040 4 C 0.327 3.673 5 O -0.373 6.373 6 O -0.331 6.331 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.091 4.091 10 N -0.224 5.224 11 C -0.090 4.090 12 C 0.202 3.798 13 O -0.463 6.463 14 N -0.221 5.221 15 C -0.436 4.436 16 H 0.137 0.863 17 C -0.161 4.161 18 N -0.518 5.518 19 Si 0.705 3.295 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.193 1.193 23 C -0.075 4.075 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.254 0.746 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.204 0.796 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.026 3.894 -7.889 19.165 hybrid contribution 1.378 0.530 -0.830 1.694 sum -15.648 4.424 -8.719 18.451 Atomic orbital electron populations 1.22070 0.94816 1.01427 1.03604 1.21541 0.96820 0.93463 1.03347 1.20742 0.96891 0.95307 0.91091 1.23379 0.79389 0.77142 0.87362 1.90713 1.56558 1.44268 1.45736 1.84676 1.27198 1.72886 1.48346 1.21702 1.00561 0.96068 0.96224 1.21606 0.95930 0.96309 1.01560 1.22287 0.94518 0.98752 0.93550 1.62391 1.08302 1.14975 1.36736 1.22058 0.88160 1.00746 0.97994 1.21149 0.82831 0.86653 0.89206 1.90405 1.60888 1.51433 1.43601 1.42422 1.05999 1.47025 1.26674 1.19450 0.91201 1.27595 1.05395 0.86336 1.25069 0.96643 0.97194 0.97145 1.69626 1.11607 1.39544 1.31055 0.86675 0.81127 0.80271 0.81399 1.19552 1.20118 1.19339 1.22381 0.89975 0.91057 1.04077 0.92327 0.90480 0.93017 0.91601 0.90113 0.74632 0.90747 0.90222 0.91282 0.92292 0.91178 0.91678 0.89130 0.89282 0.79557 0.91550 0.91282 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.05 37.16 0.34 -1.23 16 2 C -0.11 -1.31 4.98 -26.73 -0.13 -1.44 16 3 C -0.04 -0.52 0.52 -155.59 -0.08 -0.60 16 4 C 0.49 6.53 5.57 36.01 0.20 6.73 16 5 O -0.49 -8.10 15.99 -18.75 -0.30 -8.40 16 6 O -0.52 -5.11 10.21 -39.26 -0.40 -5.51 16 7 C -0.11 -1.35 4.32 -26.61 -0.11 -1.46 16 8 C -0.12 -1.53 5.84 -26.65 -0.16 -1.69 16 9 C 0.04 0.59 5.09 -3.84 -0.02 0.57 16 10 N -0.50 -8.51 3.72 -236.11 -0.88 -9.39 16 11 C 0.04 0.74 5.86 -4.97 -0.03 0.72 16 12 C 0.42 9.14 7.20 -10.99 -0.08 9.06 16 13 O -0.58 -14.26 11.20 5.55 0.06 -14.20 16 14 N -0.58 -13.71 5.09 -10.96 -0.06 -13.77 16 15 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 16 H 0.12 3.76 7.39 -52.48 -0.39 3.37 16 17 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 18 N -0.88 -25.43 13.96 55.50 0.77 -24.65 16 19 Si 0.88 19.31 27.74 -169.99 -4.71 14.60 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 23 C 0.05 0.88 3.25 -3.84 -0.01 0.87 16 24 H 0.06 0.54 6.50 -51.93 -0.34 0.21 16 25 H 0.08 0.74 5.32 -51.93 -0.28 0.47 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.40 2.38 9.10 45.56 0.41 2.79 16 30 H 0.07 0.80 6.51 -51.93 -0.34 0.46 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.79 7.35 -51.92 -0.38 0.41 16 34 H 0.07 1.33 6.00 -51.92 -0.31 1.02 16 35 H 0.06 0.99 8.06 -51.93 -0.42 0.58 16 36 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.09 1.39 8.06 -51.93 -0.42 0.98 16 38 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 41 H 0.10 1.92 5.36 -51.92 -0.28 1.64 16 LS Contribution 316.62 15.07 4.77 4.77 Total: -1.00 -32.50 316.62 -6.17 -38.67 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -5.09 Total: 13.98 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -0.34 Total: 3.89 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.16 Total: -47.81 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.64 Total: -28.10 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.50 -6.17 -38.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062877662.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.500 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds