Wall clock time and date at job start Tue Mar 31 2020 05:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.47371 * 2 1 4 4 C 1.50702 * 109.49991 * 300.07485 * 3 2 1 5 5 O 1.20825 * 119.99929 * 239.91928 * 4 3 2 6 6 O 1.34230 * 120.00152 * 59.92450 * 4 3 2 7 7 C 1.53114 * 109.53668 * 60.17302 * 3 2 1 8 8 C 1.53123 * 109.16198 * 177.61433 * 7 3 2 9 9 C 1.53035 * 109.27774 * 302.35270 * 8 7 3 10 10 N 1.46846 * 109.52744 * 59.17321 * 9 8 7 11 11 C 1.46904 * 110.99942 * 174.16069 * 10 9 8 12 12 C 1.50699 * 109.46940 * 66.04866 * 11 10 9 13 13 O 1.21294 * 120.00238 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00060 * 179.97438 * 12 11 10 15 15 C 1.37102 * 120.00369 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99884 * 359.97438 * 15 14 12 17 17 C 1.38946 * 120.00409 * 180.02562 * 15 14 12 18 18 N 1.31413 * 120.00215 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99676 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47058 * 90.00306 * 19 17 15 21 21 H 1.48498 * 109.47032 * 210.00114 * 19 17 15 22 22 H 1.48500 * 109.47125 * 330.00101 * 19 17 15 23 23 C 1.46844 * 111.19783 * 298.26158 * 10 9 8 24 24 H 1.09000 * 109.46779 * 300.00742 * 1 2 3 25 25 H 1.09000 * 109.46507 * 60.00117 * 1 2 3 26 26 H 1.08996 * 109.47116 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46779 * 239.99258 * 2 1 3 28 28 H 1.09000 * 109.46507 * 119.99883 * 2 1 3 29 29 H 0.96702 * 117.00443 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.52528 * 297.52073 * 7 3 2 31 31 H 1.09001 * 109.52673 * 57.64776 * 7 3 2 32 32 H 1.08995 * 109.51026 * 182.40543 * 8 7 3 33 33 H 1.09011 * 109.49940 * 62.28508 * 8 7 3 34 34 H 1.09008 * 109.45841 * 299.15478 * 9 8 7 35 35 H 1.09003 * 109.46290 * 179.19461 * 9 8 7 36 36 H 1.08999 * 109.47060 * 186.04709 * 11 10 9 37 37 H 1.08999 * 109.47352 * 306.05023 * 11 10 9 38 38 H 0.96999 * 120.00008 * 0.02562 * 14 12 11 39 39 H 0.96998 * 119.99542 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.46271 * 181.75698 * 23 10 9 41 41 H 1.09008 * 109.46154 * 301.73497 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5367 2.1540 -1.2293 5 8 2.3211 2.6149 -2.0244 6 8 0.2168 2.2759 -1.4410 7 6 1.5342 2.1644 1.2518 8 6 2.0980 3.5879 1.2735 9 6 3.6267 3.5265 1.2365 10 7 4.0605 2.8273 0.0202 11 6 5.5224 2.8704 -0.1187 12 6 6.1563 2.0783 0.9956 13 8 5.4591 1.5320 1.8243 14 7 7.4981 1.9768 1.0715 15 6 8.0749 1.2558 2.0849 16 1 7.4540 0.7694 2.8228 17 6 9.4582 1.1516 2.1634 18 7 10.0111 0.4609 3.1352 19 14 10.5321 1.9935 0.8876 20 1 10.8583 3.3682 1.3446 21 1 11.7873 1.2203 0.7092 22 1 9.8044 2.0611 -0.4051 23 6 3.5705 1.4432 0.0000 24 1 -0.3633 0.5140 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 -0.0582 2.7407 -2.2432 30 1 0.4451 2.2043 1.2342 31 1 1.8647 1.6273 2.1409 32 1 1.7760 4.0932 2.1840 33 1 1.7347 4.1364 0.4042 34 1 3.9898 2.9899 2.1131 35 1 4.0310 4.5388 1.2373 36 1 5.8089 2.4407 -1.0785 37 1 5.8619 3.9049 -0.0678 38 1 8.0557 2.4139 0.4091 39 1 10.9768 0.3879 3.1897 40 1 3.9339 0.9423 -0.8973 41 1 3.9338 0.9164 0.8824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062877662.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:52 Heat of formation + Delta-G solvation = -144.959231 kcal Electronic energy + Delta-G solvation = -24017.442986 eV Core-core repulsion = 20510.345300 eV Total energy + Delta-G solvation = -3507.097687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04419 -40.65000 -38.81229 -36.92996 -36.33152 -35.55491 -33.81337 -33.33505 -30.55714 -28.97948 -26.44408 -25.63690 -24.54634 -23.68551 -22.04032 -21.29218 -20.49548 -20.07044 -18.64452 -17.81337 -17.40323 -16.94380 -16.54963 -16.36108 -16.22177 -15.56540 -15.44934 -15.14086 -14.87126 -14.80570 -14.39852 -14.19277 -13.93740 -13.62910 -13.36409 -13.28086 -13.10186 -12.63352 -12.50292 -12.44461 -12.31195 -12.09153 -12.03616 -11.92485 -11.65549 -11.44972 -11.27610 -11.19846 -11.06573 -10.98064 -10.23996 -8.96263 -8.44427 -6.04263 1.29016 1.32343 1.41826 1.46206 1.88116 2.20095 2.23701 2.90993 2.96202 3.12761 3.57222 3.73073 3.86699 4.10044 4.19706 4.22088 4.35310 4.38918 4.52278 4.56412 4.60733 4.67513 4.71276 4.87342 4.95425 4.97291 5.05197 5.07973 5.10342 5.16456 5.30415 5.41800 5.50469 5.61625 5.80596 5.89737 6.01197 6.11751 6.55144 6.85165 7.24294 7.36199 7.90840 8.72883 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.004309 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.525598 B = 6495.743470 C = 6688.230832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.040 4.040 4 C 0.497 3.503 5 O -0.523 6.523 6 O -0.504 6.504 7 C -0.105 4.105 8 C -0.111 4.111 9 C 0.035 3.965 10 N -0.497 5.497 11 C 0.048 3.952 12 C 0.420 3.580 13 O -0.607 6.607 14 N -0.588 5.588 15 C -0.327 4.327 16 H 0.058 0.942 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.961 3.039 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.235 1.235 23 C 0.056 3.944 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.418 0.582 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.388 0.612 39 H 0.279 0.721 40 H 0.059 0.941 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.299 6.022 -10.762 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.041 4.041 4 C 0.339 3.661 5 O -0.410 6.410 6 O -0.318 6.318 7 C -0.142 4.142 8 C -0.148 4.148 9 C -0.093 4.093 10 N -0.219 5.219 11 C -0.084 4.084 12 C 0.207 3.793 13 O -0.493 6.493 14 N -0.229 5.229 15 C -0.456 4.456 16 H 0.076 0.924 17 C -0.211 4.211 18 N -0.573 5.573 19 Si 0.781 3.219 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.158 1.158 23 C -0.072 4.072 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.279 0.721 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.223 0.777 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.464 5.764 -10.390 21.957 hybrid contribution 1.629 -0.104 0.012 1.633 sum -16.835 5.660 -10.377 20.570 Atomic orbital electron populations 1.22029 0.92780 1.02428 1.04018 1.21554 0.98503 0.92142 1.02928 1.20665 0.94576 0.96809 0.92079 1.23105 0.80149 0.76259 0.86538 1.90707 1.57686 1.45846 1.46811 1.84599 1.24845 1.72733 1.49586 1.21707 1.01990 0.95364 0.95173 1.21592 0.93503 0.96963 1.02761 1.22329 0.96866 0.98441 0.91653 1.62503 1.07594 1.14971 1.36803 1.22216 0.88287 1.01429 0.96437 1.22239 0.82247 0.85372 0.89415 1.90426 1.61641 1.52196 1.45058 1.42275 1.06682 1.47536 1.26424 1.19020 0.91430 1.29045 1.06100 0.92415 1.26071 0.97762 0.97560 0.99710 1.69797 1.12350 1.41465 1.33653 0.85418 0.78397 0.79001 0.79084 1.18150 1.19969 1.15810 1.22242 0.92665 0.90482 1.01845 0.91734 0.90069 0.91858 0.91790 0.90916 0.72133 0.88160 0.91434 0.89338 0.91747 0.94701 0.90705 0.87296 0.86470 0.77656 0.91142 0.92203 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.05 71.99 0.65 -1.96 16 2 C -0.11 -2.51 4.98 30.60 0.15 -2.35 16 3 C -0.04 -1.02 0.52 -52.88 -0.03 -1.05 16 4 C 0.50 12.19 5.57 71.24 0.40 12.59 16 5 O -0.52 -16.30 15.99 21.97 0.35 -15.94 16 6 O -0.50 -8.13 10.21 -51.41 -0.52 -8.66 16 7 C -0.10 -2.45 4.32 30.67 0.13 -2.32 16 8 C -0.11 -2.70 5.84 30.65 0.18 -2.52 16 9 C 0.04 1.10 5.09 86.33 0.44 1.54 16 10 N -0.50 -16.44 3.72 -900.92 -3.35 -19.79 16 11 C 0.05 1.63 5.86 85.56 0.50 2.13 16 12 C 0.42 18.77 7.20 87.66 0.63 19.40 16 13 O -0.61 -31.56 11.20 -3.07 -0.03 -31.59 16 14 N -0.59 -27.86 5.09 -306.98 -1.56 -29.43 16 15 C -0.33 -19.01 10.16 84.04 0.85 -18.15 16 16 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 17 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 18 N -0.93 -56.07 13.96 21.66 0.30 -55.77 16 19 Si 0.96 39.24 27.74 68.60 1.90 41.15 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.23 -8.24 6.52 99.48 0.65 -7.59 16 23 C 0.06 1.87 3.25 86.32 0.28 2.15 16 24 H 0.06 1.01 6.50 -2.39 -0.02 0.99 16 25 H 0.08 1.30 5.32 -2.39 -0.01 1.29 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.42 3.38 9.10 -74.06 -0.67 2.71 16 30 H 0.10 1.84 6.51 -2.39 -0.02 1.83 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.54 7.35 -2.38 -0.02 1.52 16 34 H 0.03 1.36 6.00 -2.38 -0.01 1.34 16 35 H 0.07 2.18 8.06 -2.39 -0.02 2.16 16 36 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.12 3.34 8.06 -2.39 -0.02 3.32 16 38 H 0.39 15.56 5.76 -92.71 -0.53 15.02 16 39 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.06 2.07 8.06 -2.39 -0.02 2.05 16 41 H 0.06 2.63 5.36 -2.38 -0.01 2.62 16 Total: -1.00 -75.34 316.62 1.54 -73.79 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -0.20 Total: 36.98 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 4.66 Total: 9.26 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -4.61 Total: -104.98 kcal Atomic # 8 Polarization: -55.99 SS G_CDS: -0.21 Total: -56.19 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.90 Total: 41.15 kcal Total: -75.34 1.54 -73.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062877662.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.165 kcal (2) G-P(sol) polarization free energy of solvation -75.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds