Wall clock time and date at job start Tue Mar 31 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45203 * 109.47013 * 2 1 4 4 C 1.34220 * 116.99915 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00587 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00109 * 180.02562 * 4 3 2 7 7 H 1.09004 * 109.45592 * 328.73690 * 6 4 3 8 8 C 1.53036 * 109.46318 * 88.70620 * 6 4 3 9 9 C 1.53124 * 109.27844 * 179.19632 * 8 6 4 10 10 C 1.53110 * 109.16201 * 302.34751 * 9 8 6 11 11 C 1.53041 * 109.28136 * 57.65292 * 10 9 8 12 12 N 1.46845 * 109.46611 * 208.76217 * 6 4 3 13 13 C 1.46897 * 111.00023 * 54.14235 * 12 6 4 14 14 C 1.50697 * 109.47313 * 200.29646 * 13 12 6 15 15 O 1.21289 * 120.00240 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00330 * 180.02562 * 14 13 12 17 17 C 1.37093 * 120.00543 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99902 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00487 * 180.27386 * 17 16 14 20 20 N 1.31410 * 119.99733 * 359.73190 * 19 17 16 21 21 Si 1.86803 * 120.00099 * 179.72641 * 19 17 16 22 22 H 1.48503 * 109.47170 * 60.00499 * 21 19 17 23 23 H 1.48497 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47319 * 300.00135 * 21 19 17 25 25 H 1.08992 * 109.47490 * 59.99111 * 1 2 3 26 26 H 1.09008 * 109.46833 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46577 * 299.99247 * 1 2 3 28 28 H 1.09009 * 109.46577 * 240.00753 * 2 1 3 29 29 H 1.08992 * 109.47490 * 120.00888 * 2 1 3 30 30 H 1.08998 * 109.50356 * 59.25701 * 8 6 4 31 31 H 1.09001 * 109.53650 * 299.15982 * 8 6 4 32 32 H 1.08999 * 109.51794 * 182.44220 * 9 8 6 33 33 H 1.08996 * 109.57028 * 62.28667 * 9 8 6 34 34 H 1.09005 * 109.50582 * 297.71538 * 10 9 8 35 35 H 1.08998 * 109.54025 * 177.61685 * 10 9 8 36 36 H 1.08997 * 109.46284 * 180.80809 * 11 10 9 37 37 H 1.09002 * 109.44672 * 60.83108 * 11 10 9 38 38 H 1.08997 * 109.47352 * 80.29579 * 13 12 6 39 39 H 1.09006 * 109.47435 * 320.29575 * 13 12 6 40 40 H 0.97006 * 120.00030 * 359.97438 * 16 14 13 41 41 H 0.97006 * 119.99776 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0808 0.5868 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.2474 3.6091 -0.5327 8 6 4.0862 3.4202 1.4428 9 6 4.6902 4.8273 1.4389 10 6 6.0290 4.7974 0.6965 11 6 5.8072 4.2747 -0.7247 12 7 5.2289 2.9261 -0.6668 13 6 5.1306 2.3375 -2.0091 14 6 6.4952 1.8844 -2.4602 15 8 7.4554 2.0372 -1.7351 16 7 6.6489 1.3103 -3.6698 17 6 7.8904 0.8985 -4.0805 18 1 8.7453 1.0338 -3.4344 19 6 8.0499 0.3118 -5.3299 20 7 7.0097 0.1468 -6.1158 21 14 9.7428 -0.2423 -5.8924 22 1 10.2695 -1.2603 -4.9482 23 1 9.6442 -0.8325 -7.2514 24 1 10.6604 0.9249 -5.9244 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 4.7485 2.7414 1.9800 31 1 3.1131 3.4433 1.9333 32 1 4.8501 5.1578 2.4652 33 1 4.0103 5.5151 0.9364 34 1 6.7219 4.1402 1.2219 35 1 6.4444 5.8042 0.6532 36 1 6.7609 4.2386 -1.2513 37 1 5.1250 4.9401 -1.2537 38 1 4.7467 3.0830 -2.7055 39 1 4.4544 1.4830 -1.9825 40 1 5.8811 1.1884 -4.2500 41 1 7.1210 -0.2624 -6.9882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066473609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:14 Heat of formation + Delta-G solvation = -120.737644 kcal Electronic energy + Delta-G solvation = -23331.467547 eV Core-core repulsion = 19825.420187 eV Total energy + Delta-G solvation = -3506.047360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76405 -38.86293 -37.53553 -36.38551 -33.95059 -33.14927 -32.06248 -31.12192 -30.95286 -27.57914 -25.15178 -24.36044 -23.09928 -22.75381 -20.92532 -19.62701 -19.12838 -17.80973 -17.66242 -16.72230 -16.42539 -15.78651 -15.27065 -14.91541 -14.50301 -14.37955 -13.97540 -13.85596 -13.66831 -13.28837 -13.24655 -12.90161 -12.84637 -12.58108 -12.07526 -11.96131 -11.73148 -11.47629 -11.41059 -11.31201 -10.99569 -10.85653 -10.70101 -10.51729 -10.38785 -10.33421 -10.13900 -9.97264 -9.39689 -8.45568 -7.90190 -7.84795 -6.33697 -3.74003 2.29674 2.56204 3.25532 3.30127 3.34918 3.86065 4.01077 4.28137 4.58621 4.72447 4.81289 4.86020 4.90833 5.02356 5.10946 5.15883 5.18656 5.31239 5.31414 5.53047 5.58830 5.61548 5.62812 5.73990 5.77483 5.80035 5.89087 5.93155 5.97974 6.10719 6.30391 6.37939 6.45175 6.47801 7.14751 7.26228 7.62438 7.91298 8.14344 8.71045 9.26558 9.63440 10.16214 10.84449 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.004791 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.037790 B = 5842.358210 C = 7262.219800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.364 6.364 4 C 0.458 3.542 5 O -0.473 6.473 6 C 0.099 3.901 7 H 0.069 0.931 8 C -0.105 4.105 9 C -0.116 4.116 10 C -0.118 4.118 11 C 0.063 3.937 12 N -0.495 5.495 13 C 0.040 3.960 14 C 0.453 3.547 15 O -0.572 6.572 16 N -0.568 5.568 17 C -0.295 4.295 18 H 0.102 0.898 19 C 0.021 3.979 20 N -0.905 5.905 21 Si 0.930 3.070 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.029 0.971 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.391 0.609 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.625 6.736 11.754 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.282 6.282 4 C 0.298 3.702 5 O -0.356 6.356 6 C -0.011 4.011 7 H 0.087 0.913 8 C -0.143 4.143 9 C -0.154 4.154 10 C -0.156 4.156 11 C -0.064 4.064 12 N -0.222 5.222 13 C -0.091 4.091 14 C 0.238 3.762 15 O -0.455 6.455 16 N -0.205 5.205 17 C -0.425 4.425 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.547 5.547 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.223 0.777 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.459 6.122 12.328 18.566 hybrid contribution -0.276 -0.232 -1.319 1.368 sum -12.735 5.890 11.009 17.835 Atomic orbital electron populations 1.21796 0.92708 1.02892 1.03369 1.23021 0.95197 0.80353 1.02849 1.86487 1.24792 1.32388 1.84486 1.23604 0.80434 0.92803 0.73382 1.90757 1.59997 1.42455 1.42436 1.21248 0.91408 0.89712 0.98720 0.91335 1.21553 1.01854 0.97987 0.92925 1.21569 0.97319 0.95589 1.00921 1.21611 0.97278 1.00979 0.95697 1.22172 1.00648 0.86237 0.97295 1.61270 1.19476 1.22351 1.19055 1.21974 0.98812 0.99386 0.88910 1.19549 0.89382 0.84126 0.83119 1.90503 1.40815 1.59729 1.54423 1.41828 1.10564 1.53383 1.14738 1.19640 0.86780 1.35745 1.00335 0.88005 1.25235 0.99145 0.97624 0.96005 1.69612 1.29834 1.44719 1.10503 0.85927 0.81782 0.79029 0.77515 1.19940 1.21045 1.19963 0.91471 0.90300 0.91621 0.91027 0.91259 0.90089 0.90804 0.91277 0.91997 0.90465 0.91370 0.88478 0.95332 0.93117 0.89741 0.77659 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.36 -4.88 10.22 -39.23 -0.40 -5.28 16 4 C 0.46 7.26 5.76 36.01 0.21 7.47 16 5 O -0.47 -9.37 15.19 -18.75 -0.28 -9.66 16 6 C 0.10 1.42 2.34 -68.87 -0.16 1.26 16 7 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 8 C -0.11 -1.23 5.36 -26.65 -0.14 -1.38 16 9 C -0.12 -1.19 6.00 -26.61 -0.16 -1.35 16 10 C -0.12 -1.48 6.09 -26.65 -0.16 -1.64 16 11 C 0.06 0.99 5.11 -3.83 -0.02 0.97 16 12 N -0.50 -8.81 3.81 -229.52 -0.87 -9.68 16 13 C 0.04 0.80 5.09 -4.98 -0.03 0.77 16 14 C 0.45 11.42 7.49 -10.99 -0.08 11.34 16 15 O -0.57 -16.18 14.78 5.55 0.08 -16.09 16 16 N -0.57 -15.19 5.29 -10.97 -0.06 -15.25 16 17 C -0.30 -8.55 9.68 -14.94 -0.14 -8.69 16 18 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -25.39 13.05 55.50 0.72 -24.67 16 21 Si 0.93 21.70 29.55 -169.99 -5.02 16.67 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.07 0.87 8.13 -51.92 -0.42 0.44 16 29 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.82 6.74 -51.93 -0.35 1.47 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.89 7.99 -51.93 -0.42 0.47 16 39 H 0.08 1.68 5.67 -51.93 -0.29 1.38 16 40 H 0.39 10.04 7.90 -40.82 -0.32 9.72 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 337.71 15.07 5.09 5.09 Total: -1.00 -33.96 337.71 -7.31 -41.27 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.39 Total: 8.27 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -0.17 Total: 9.33 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.21 Total: -49.60 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.60 Total: -31.03 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.96 -7.31 -41.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066473609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.470 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds