Wall clock time and date at job start Tue Mar 31 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45203 * 109.47013 * 2 1 4 4 C 1.34220 * 116.99915 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00587 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00109 * 180.02562 * 4 3 2 7 7 H 1.09004 * 109.45592 * 328.73690 * 6 4 3 8 8 C 1.53036 * 109.46318 * 88.70620 * 6 4 3 9 9 C 1.53124 * 109.27844 * 179.19632 * 8 6 4 10 10 C 1.53110 * 109.16201 * 302.34751 * 9 8 6 11 11 C 1.53041 * 109.28136 * 57.65292 * 10 9 8 12 12 N 1.46845 * 109.46611 * 208.76217 * 6 4 3 13 13 C 1.46897 * 111.00023 * 54.14235 * 12 6 4 14 14 C 1.50697 * 109.47313 * 200.29646 * 13 12 6 15 15 O 1.21289 * 120.00240 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00330 * 180.02562 * 14 13 12 17 17 C 1.37093 * 120.00543 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99902 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00487 * 180.27386 * 17 16 14 20 20 N 1.31410 * 119.99733 * 359.73190 * 19 17 16 21 21 Si 1.86803 * 120.00099 * 179.72641 * 19 17 16 22 22 H 1.48503 * 109.47170 * 60.00499 * 21 19 17 23 23 H 1.48497 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47319 * 300.00135 * 21 19 17 25 25 H 1.08992 * 109.47490 * 59.99111 * 1 2 3 26 26 H 1.09008 * 109.46833 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46577 * 299.99247 * 1 2 3 28 28 H 1.09009 * 109.46577 * 240.00753 * 2 1 3 29 29 H 1.08992 * 109.47490 * 120.00888 * 2 1 3 30 30 H 1.08998 * 109.50356 * 59.25701 * 8 6 4 31 31 H 1.09001 * 109.53650 * 299.15982 * 8 6 4 32 32 H 1.08999 * 109.51794 * 182.44220 * 9 8 6 33 33 H 1.08996 * 109.57028 * 62.28667 * 9 8 6 34 34 H 1.09005 * 109.50582 * 297.71538 * 10 9 8 35 35 H 1.08998 * 109.54025 * 177.61685 * 10 9 8 36 36 H 1.08997 * 109.46284 * 180.80809 * 11 10 9 37 37 H 1.09002 * 109.44672 * 60.83108 * 11 10 9 38 38 H 1.08997 * 109.47352 * 80.29579 * 13 12 6 39 39 H 1.09006 * 109.47435 * 320.29575 * 13 12 6 40 40 H 0.97006 * 120.00030 * 359.97438 * 16 14 13 41 41 H 0.97006 * 119.99776 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0808 0.5868 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.2474 3.6091 -0.5327 8 6 4.0862 3.4202 1.4428 9 6 4.6902 4.8273 1.4389 10 6 6.0290 4.7974 0.6965 11 6 5.8072 4.2747 -0.7247 12 7 5.2289 2.9261 -0.6668 13 6 5.1306 2.3375 -2.0091 14 6 6.4952 1.8844 -2.4602 15 8 7.4554 2.0372 -1.7351 16 7 6.6489 1.3103 -3.6698 17 6 7.8904 0.8985 -4.0805 18 1 8.7453 1.0338 -3.4344 19 6 8.0499 0.3118 -5.3299 20 7 7.0097 0.1468 -6.1158 21 14 9.7428 -0.2423 -5.8924 22 1 10.2695 -1.2603 -4.9482 23 1 9.6442 -0.8325 -7.2514 24 1 10.6604 0.9249 -5.9244 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 4.7485 2.7414 1.9800 31 1 3.1131 3.4433 1.9333 32 1 4.8501 5.1578 2.4652 33 1 4.0103 5.5151 0.9364 34 1 6.7219 4.1402 1.2219 35 1 6.4444 5.8042 0.6532 36 1 6.7609 4.2386 -1.2513 37 1 5.1250 4.9401 -1.2537 38 1 4.7467 3.0830 -2.7055 39 1 4.4544 1.4830 -1.9825 40 1 5.8811 1.1884 -4.2500 41 1 7.1210 -0.2624 -6.9882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066473609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:14 Heat of formation + Delta-G solvation = -144.679114 kcal Electronic energy + Delta-G solvation = -23332.505727 eV Core-core repulsion = 19825.420187 eV Total energy + Delta-G solvation = -3507.085540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.99580 -40.37292 -39.17661 -37.59945 -35.99080 -34.47804 -33.25082 -33.00121 -31.93794 -29.14281 -26.73543 -25.80682 -24.27363 -23.75160 -22.04373 -21.08571 -20.67913 -19.91596 -18.85797 -18.08055 -17.59265 -17.44190 -16.67719 -16.47409 -16.20540 -15.63173 -15.41568 -15.33021 -14.86847 -14.80885 -14.28725 -14.12230 -13.97591 -13.66217 -13.54296 -13.40191 -13.13231 -12.92833 -12.68796 -12.54362 -12.45324 -12.38451 -12.13107 -11.98528 -11.63578 -11.56219 -11.53395 -11.35281 -11.14880 -10.36994 -10.02481 -9.29888 -8.47346 -5.96589 1.06729 1.38452 1.39389 1.48613 1.51361 2.03114 2.26101 2.59498 3.17895 3.32406 3.58463 3.73484 3.92658 3.98705 4.01029 4.07447 4.08277 4.23031 4.25751 4.31542 4.34058 4.42252 4.51044 4.81334 4.82692 4.83761 4.92452 4.93685 5.02478 5.12355 5.18165 5.28909 5.38568 5.40651 5.47193 5.76280 6.02142 6.04516 6.58665 6.72404 7.11173 7.53298 8.09838 8.70346 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.004791 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.037790 B = 5842.358210 C = 7262.219800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 O -0.355 6.355 4 C 0.460 3.540 5 O -0.523 6.523 6 C 0.098 3.902 7 H 0.100 0.900 8 C -0.102 4.102 9 C -0.107 4.107 10 C -0.115 4.115 11 C 0.062 3.938 12 N -0.523 5.523 13 C 0.056 3.944 14 C 0.447 3.553 15 O -0.609 6.609 16 N -0.577 5.577 17 C -0.334 4.334 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.923 5.923 21 Si 0.995 3.005 22 H -0.274 1.274 23 H -0.268 1.268 24 H -0.269 1.269 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.393 0.607 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.462 8.018 12.145 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.271 6.271 4 C 0.303 3.697 5 O -0.411 6.411 6 C -0.011 4.011 7 H 0.118 0.882 8 C -0.140 4.140 9 C -0.144 4.144 10 C -0.152 4.152 11 C -0.064 4.064 12 N -0.250 5.250 13 C -0.076 4.076 14 C 0.234 3.766 15 O -0.495 6.495 16 N -0.214 5.214 17 C -0.463 4.463 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.564 5.564 21 Si 0.818 3.182 22 H -0.200 1.200 23 H -0.192 1.192 24 H -0.194 1.194 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.227 0.773 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.350 7.426 12.720 20.564 hybrid contribution 0.240 -0.655 -1.413 1.575 sum -14.110 6.771 11.307 19.308 Atomic orbital electron populations 1.21808 0.89614 1.04407 1.04033 1.23310 0.97553 0.79301 1.02189 1.86492 1.23327 1.33598 1.83713 1.24035 0.80838 0.92983 0.71848 1.90742 1.61237 1.44120 1.45003 1.21476 0.90054 0.89284 1.00310 0.88249 1.21624 1.03140 0.98381 0.90875 1.21559 0.95773 0.94891 1.02170 1.21605 0.98675 1.01260 0.93691 1.22176 0.99101 0.85868 0.99278 1.61142 1.22255 1.23785 1.17841 1.21732 0.94729 1.00121 0.90978 1.20555 0.91285 0.82639 0.82096 1.90465 1.42871 1.60850 1.55265 1.41913 1.10083 1.53937 1.15516 1.19631 0.87216 1.38230 1.01222 0.90371 1.26069 1.03116 0.96766 0.95346 1.69678 1.31503 1.44381 1.10809 0.84964 0.77072 0.78588 0.77529 1.19962 1.19230 1.19389 0.91186 0.88380 0.90497 0.92422 0.91392 0.92483 0.87748 0.88947 0.89525 0.93200 0.89119 0.92674 0.92628 0.90462 0.90009 0.77328 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 10.29 71.98 0.74 -1.19 16 2 C 0.05 1.10 6.19 71.98 0.45 1.54 16 3 O -0.35 -9.00 10.22 -51.32 -0.52 -9.53 16 4 C 0.46 14.36 5.76 71.24 0.41 14.77 16 5 O -0.52 -21.36 15.19 21.97 0.33 -21.03 16 6 C 0.10 2.63 2.34 44.19 0.10 2.73 16 7 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 8 C -0.10 -2.14 5.36 30.65 0.16 -1.98 16 9 C -0.11 -1.79 6.00 30.67 0.18 -1.60 16 10 C -0.11 -2.72 6.09 30.64 0.19 -2.53 16 11 C 0.06 1.91 5.11 86.33 0.44 2.36 16 12 N -0.52 -18.56 3.81 -880.05 -3.35 -21.91 16 13 C 0.06 2.22 5.09 85.56 0.44 2.66 16 14 C 0.45 23.48 7.49 87.66 0.66 24.14 16 15 O -0.61 -36.33 14.78 -3.06 -0.05 -36.37 16 16 N -0.58 -32.06 5.29 -306.99 -1.62 -33.68 16 17 C -0.33 -20.02 9.68 84.04 0.81 -19.20 16 18 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 19 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 20 N -0.92 -51.87 13.05 21.66 0.28 -51.59 16 21 Si 1.00 44.64 29.55 68.60 2.03 46.67 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.08 0.89 8.14 -2.38 -0.02 0.88 16 28 H 0.06 1.42 8.13 -2.38 -0.02 1.40 16 29 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 2.14 6.74 -2.39 -0.02 2.13 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.08 2.63 7.99 -2.39 -0.02 2.62 16 39 H 0.08 3.31 5.67 -2.38 -0.01 3.30 16 40 H 0.39 20.89 7.90 -92.70 -0.73 20.15 16 41 H 0.28 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -77.21 337.71 2.44 -74.76 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.30 Total: 31.28 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 5.05 Total: 21.40 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -4.69 Total: -107.17 kcal Atomic # 8 Polarization: -66.69 SS G_CDS: -0.24 Total: -66.93 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -77.21 2.44 -74.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066473609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.918 kcal (2) G-P(sol) polarization free energy of solvation -77.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds