Wall clock time and date at job start Tue Mar 31 2020 06:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99946 * 2 1 4 4 H 1.48502 * 109.47381 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47526 * 299.99820 * 3 2 1 6 6 H 1.48505 * 109.47200 * 59.99931 * 3 2 1 7 7 C 1.38803 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99807 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99806 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00029 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47237 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46955 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47019 * 179.97438 * 12 11 10 14 14 C 1.46960 * 110.99745 * 169.99870 * 13 12 11 15 15 C 1.53055 * 109.35954 * 183.19068 * 14 13 12 16 16 N 1.46955 * 109.36527 * 301.59579 * 15 14 13 17 17 C 1.46900 * 111.00149 * 183.19176 * 16 15 14 18 18 C 1.53006 * 109.47349 * 170.00492 * 17 16 15 19 19 C 1.53000 * 117.49776 * 174.99953 * 18 17 16 20 20 C 1.52997 * 117.49537 * 243.62408 * 18 17 16 21 21 C 1.46960 * 110.88009 * 59.32640 * 16 15 14 22 22 C 1.46956 * 111.00315 * 293.80079 * 13 12 11 23 23 H 0.97003 * 120.00202 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47009 * 59.99986 * 10 9 7 25 25 H 1.09006 * 109.47237 * 300.00300 * 10 9 7 26 26 H 1.08998 * 109.47135 * 60.00288 * 11 10 9 27 27 H 1.09004 * 109.46945 * 299.99735 * 11 10 9 28 28 H 1.09006 * 109.47166 * 59.99943 * 12 11 10 29 29 H 1.09006 * 109.47362 * 300.00084 * 12 11 10 30 30 H 1.09001 * 109.49070 * 63.22685 * 14 13 12 31 31 H 1.08993 * 109.49250 * 303.15138 * 14 13 12 32 32 H 1.09007 * 109.48747 * 181.63622 * 15 14 13 33 33 H 1.08997 * 109.51019 * 61.58114 * 15 14 13 34 34 H 1.08997 * 109.47197 * 50.00472 * 17 16 15 35 35 H 1.09003 * 109.47053 * 290.00030 * 17 16 15 36 36 H 1.09002 * 115.56020 * 29.30536 * 18 17 16 37 37 H 1.08990 * 117.49990 * 359.97438 * 19 18 17 38 38 H 1.09004 * 117.49237 * 214.97568 * 19 18 17 39 39 H 1.08999 * 117.49685 * 145.02116 * 20 18 17 40 40 H 1.08999 * 117.52022 * 359.97438 * 20 18 17 41 41 H 1.09001 * 109.49070 * 60.64083 * 21 16 15 42 42 H 1.08999 * 109.49110 * 180.70935 * 21 16 15 43 43 H 1.09003 * 109.48515 * 296.78277 * 22 13 12 44 44 H 1.08997 * 109.48571 * 56.82037 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9793 -5.3243 0.0017 12 6 3.1514 -6.3077 0.0037 13 7 2.6363 -7.6834 0.0039 14 6 3.7173 -8.6505 -0.2325 15 6 3.1289 -10.0616 -0.3040 16 7 2.4243 -10.3600 0.9506 17 6 1.9092 -11.7357 0.9508 18 6 1.4064 -12.0919 2.3513 19 6 0.7209 -13.4477 2.5322 20 6 2.1255 -13.2194 3.0944 21 6 1.3433 -9.3929 1.1870 22 6 1.9316 -7.9818 1.2585 23 1 -0.4850 0.8401 -0.0004 24 1 3.1238 -3.7309 0.8926 25 1 3.1252 -3.7317 -0.8875 26 1 1.3717 -5.4844 -0.8889 27 1 1.3698 -5.4842 0.8911 28 1 3.7587 -6.1473 0.8946 29 1 3.7614 -6.1478 -0.8854 30 1 4.4375 -8.5977 0.5840 31 1 4.2156 -8.4162 -1.1731 32 1 3.9324 -10.7836 -0.4503 33 1 2.4292 -10.1224 -1.1375 34 1 2.7063 -12.4222 0.6655 35 1 1.0880 -11.8163 0.2386 36 1 1.0335 -11.2563 2.9437 37 1 0.6278 -14.0858 1.6535 38 1 -0.1030 -13.5041 3.2437 39 1 2.2256 -13.1258 4.1758 40 1 2.9566 -13.7080 2.5858 41 1 0.6231 -9.4456 0.3705 42 1 0.8449 -9.6272 2.1276 43 1 2.6315 -7.9213 2.0919 44 1 1.1284 -7.2596 1.4050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:55 Heat of formation + Delta-G solvation = 21.828565 kcal Electronic energy + Delta-G solvation = -19764.192721 eV Core-core repulsion = 16842.913462 eV Total energy + Delta-G solvation = -2921.279260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.63844 -37.75624 -35.62039 -32.65108 -32.38339 -31.04947 -28.60857 -25.84158 -25.26439 -23.93149 -23.43736 -22.67094 -20.75665 -20.57093 -19.82688 -17.45217 -16.81627 -15.73639 -15.50707 -15.21146 -14.88995 -14.78971 -14.73368 -14.48766 -13.98631 -13.75724 -13.73495 -12.94392 -12.65984 -12.39597 -11.97382 -11.92677 -11.84321 -11.60676 -11.40031 -11.32796 -11.07630 -11.01353 -10.90379 -10.70278 -10.62061 -10.51513 -10.26187 -10.19310 -9.49273 -9.04703 -8.56683 -8.29162 -8.26223 -6.50099 -6.20938 -3.90688 3.22136 3.23495 3.31175 3.37002 3.56045 3.73770 3.94425 4.24663 4.37900 4.59672 4.67351 4.79142 4.92483 4.99684 5.08131 5.14963 5.15732 5.25530 5.31065 5.34711 5.37488 5.38982 5.41560 5.44491 5.57710 5.60246 5.68910 5.76378 5.79154 5.80103 5.84696 5.90382 5.94657 6.01276 6.13106 6.38502 6.62755 6.75743 6.80955 6.82901 7.10537 7.13330 7.62840 8.38961 9.25465 10.87304 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.042449 B = 0.002384 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.462177 B =11744.293516 C =12099.318300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.515 4.515 8 H 0.072 0.928 9 S -0.134 6.134 10 C -0.112 4.112 11 C -0.093 4.093 12 C 0.061 3.939 13 N -0.540 5.540 14 C 0.057 3.943 15 C 0.059 3.941 16 N -0.538 5.538 17 C 0.087 3.913 18 C -0.147 4.147 19 C -0.183 4.183 20 C -0.175 4.175 21 C 0.056 3.944 22 C 0.053 3.947 23 H 0.266 0.734 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.904 -25.197 2.634 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.139 4.139 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.663 4.663 8 H 0.091 0.909 9 S 0.095 5.905 10 C -0.261 4.261 11 C -0.132 4.132 12 C -0.068 4.068 13 N -0.265 5.265 14 C -0.071 4.071 15 C -0.069 4.069 16 N -0.263 5.263 17 C -0.041 4.041 18 C -0.165 4.165 19 C -0.221 4.221 20 C -0.212 4.212 21 C -0.072 4.072 22 C -0.075 4.075 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.629 -25.266 2.623 25.660 hybrid contribution 1.884 1.304 0.044 2.292 sum 5.514 -23.962 2.667 24.733 Atomic orbital electron populations 1.70034 1.05907 1.27170 1.47437 1.25023 0.95088 0.99096 0.94686 0.86114 0.79650 0.81896 0.77862 1.19626 1.20580 1.20594 1.22736 0.94543 0.90803 1.58208 0.90941 1.84627 1.09654 0.99424 1.96831 1.23231 1.02791 0.97414 1.02692 1.21275 0.96980 0.91876 1.03050 1.22168 0.97103 0.86836 1.00681 1.62156 1.26954 1.02708 1.34644 1.22127 0.92812 0.91117 1.01056 1.22138 0.97962 0.96472 0.90344 1.62120 1.27476 1.02063 1.34671 1.21634 0.98160 0.89898 0.94388 1.22301 1.03950 0.92519 0.97769 1.22977 0.96180 0.99517 1.03381 1.22985 0.95324 1.02694 1.00204 1.22220 0.92494 0.91281 1.01169 1.22225 0.98790 0.95925 0.90547 0.92392 0.92369 0.92168 0.90845 0.91713 0.94891 0.90869 0.94161 0.90324 0.90567 0.93937 0.90823 0.94381 0.87332 0.88929 0.88782 0.88942 0.88906 0.93865 0.90229 0.94122 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.94 9.50 30.94 0.29 -14.64 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.13 -3.55 21.44 -107.50 -2.30 -5.85 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 C -0.09 -1.56 5.15 -26.73 -0.14 -1.70 16 12 C 0.06 0.85 4.96 -3.82 -0.02 0.83 16 13 N -0.54 -6.88 4.71 -234.46 -1.10 -7.98 16 14 C 0.06 0.62 5.61 -3.76 -0.02 0.60 16 15 C 0.06 0.57 5.61 -3.77 -0.02 0.55 16 16 N -0.54 -5.38 4.71 -234.46 -1.10 -6.48 16 17 C 0.09 0.73 5.24 -3.82 -0.02 0.71 16 18 C -0.15 -1.16 5.68 -90.62 -0.51 -1.68 16 19 C -0.18 -1.22 10.25 -26.73 -0.27 -1.50 16 20 C -0.18 -1.23 10.18 -26.73 -0.27 -1.51 16 21 C 0.06 0.59 5.44 -3.77 -0.02 0.57 16 22 C 0.05 0.64 5.41 -3.77 -0.02 0.62 16 23 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 25 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.06 1.09 6.49 -51.93 -0.34 0.75 16 28 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.07 0.98 8.03 -51.93 -0.42 0.57 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.57 7.76 -51.93 -0.40 0.16 16 35 H 0.04 0.33 8.12 -51.93 -0.42 -0.10 16 36 H 0.11 0.93 6.37 -51.93 -0.33 0.60 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.61 8.03 -51.93 -0.42 0.20 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.76 6.25 -51.93 -0.32 0.43 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 1.10 6.34 -51.93 -0.33 0.77 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -30.93 358.33 -12.33 -43.26 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -8.01 Total: -2.25 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -0.91 Total: -17.32 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -1.47 Total: -39.96 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.93 -12.33 -43.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.090 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds