Wall clock time and date at job start Tue Mar 31 2020 06:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99946 * 2 1 4 4 H 1.48502 * 109.47381 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47526 * 299.99820 * 3 2 1 6 6 H 1.48505 * 109.47200 * 59.99931 * 3 2 1 7 7 C 1.38803 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99807 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99806 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00029 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47237 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46955 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47019 * 179.97438 * 12 11 10 14 14 C 1.46960 * 110.99745 * 169.99870 * 13 12 11 15 15 C 1.53055 * 109.35954 * 183.19068 * 14 13 12 16 16 N 1.46955 * 109.36527 * 301.59579 * 15 14 13 17 17 C 1.46900 * 111.00149 * 183.19176 * 16 15 14 18 18 C 1.53006 * 109.47349 * 170.00492 * 17 16 15 19 19 C 1.53000 * 117.49776 * 174.99953 * 18 17 16 20 20 C 1.52997 * 117.49537 * 243.62408 * 18 17 16 21 21 C 1.46960 * 110.88009 * 59.32640 * 16 15 14 22 22 C 1.46956 * 111.00315 * 293.80079 * 13 12 11 23 23 H 0.97003 * 120.00202 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47009 * 59.99986 * 10 9 7 25 25 H 1.09006 * 109.47237 * 300.00300 * 10 9 7 26 26 H 1.08998 * 109.47135 * 60.00288 * 11 10 9 27 27 H 1.09004 * 109.46945 * 299.99735 * 11 10 9 28 28 H 1.09006 * 109.47166 * 59.99943 * 12 11 10 29 29 H 1.09006 * 109.47362 * 300.00084 * 12 11 10 30 30 H 1.09001 * 109.49070 * 63.22685 * 14 13 12 31 31 H 1.08993 * 109.49250 * 303.15138 * 14 13 12 32 32 H 1.09007 * 109.48747 * 181.63622 * 15 14 13 33 33 H 1.08997 * 109.51019 * 61.58114 * 15 14 13 34 34 H 1.08997 * 109.47197 * 50.00472 * 17 16 15 35 35 H 1.09003 * 109.47053 * 290.00030 * 17 16 15 36 36 H 1.09002 * 115.56020 * 29.30536 * 18 17 16 37 37 H 1.08990 * 117.49990 * 359.97438 * 19 18 17 38 38 H 1.09004 * 117.49237 * 214.97568 * 19 18 17 39 39 H 1.08999 * 117.49685 * 145.02116 * 20 18 17 40 40 H 1.08999 * 117.52022 * 359.97438 * 20 18 17 41 41 H 1.09001 * 109.49070 * 60.64083 * 21 16 15 42 42 H 1.08999 * 109.49110 * 180.70935 * 21 16 15 43 43 H 1.09003 * 109.48515 * 296.78277 * 22 13 12 44 44 H 1.08997 * 109.48571 * 56.82037 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9793 -5.3243 0.0017 12 6 3.1514 -6.3077 0.0037 13 7 2.6363 -7.6834 0.0039 14 6 3.7173 -8.6505 -0.2325 15 6 3.1289 -10.0616 -0.3040 16 7 2.4243 -10.3600 0.9506 17 6 1.9092 -11.7357 0.9508 18 6 1.4064 -12.0919 2.3513 19 6 0.7209 -13.4477 2.5322 20 6 2.1255 -13.2194 3.0944 21 6 1.3433 -9.3929 1.1870 22 6 1.9316 -7.9818 1.2585 23 1 -0.4850 0.8401 -0.0004 24 1 3.1238 -3.7309 0.8926 25 1 3.1252 -3.7317 -0.8875 26 1 1.3717 -5.4844 -0.8889 27 1 1.3698 -5.4842 0.8911 28 1 3.7587 -6.1473 0.8946 29 1 3.7614 -6.1478 -0.8854 30 1 4.4375 -8.5977 0.5840 31 1 4.2156 -8.4162 -1.1731 32 1 3.9324 -10.7836 -0.4503 33 1 2.4292 -10.1224 -1.1375 34 1 2.7063 -12.4222 0.6655 35 1 1.0880 -11.8163 0.2386 36 1 1.0335 -11.2563 2.9437 37 1 0.6278 -14.0858 1.6535 38 1 -0.1030 -13.5041 3.2437 39 1 2.2256 -13.1258 4.1758 40 1 2.9566 -13.7080 2.5858 41 1 0.6231 -9.4456 0.3705 42 1 0.8449 -9.6272 2.1276 43 1 2.6315 -7.9213 2.0919 44 1 1.1284 -7.2596 1.4050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074981969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:54 Heat of formation + Delta-G solvation = 2.885799 kcal Electronic energy + Delta-G solvation = -19765.014142 eV Core-core repulsion = 16842.913462 eV Total energy + Delta-G solvation = -2922.100680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48598 -38.47656 -36.54296 -34.61579 -33.85982 -31.92019 -29.56352 -27.83705 -26.50149 -24.81726 -24.49367 -23.19106 -22.06963 -21.21596 -20.69915 -19.55591 -17.64510 -16.90151 -16.66602 -16.51899 -16.10313 -16.01451 -15.72484 -15.62069 -15.28955 -14.79391 -14.68595 -14.44813 -13.63969 -13.50293 -13.34160 -13.16913 -12.96738 -12.86011 -12.65401 -12.48675 -12.36137 -12.28903 -12.22237 -11.96457 -11.73137 -11.48485 -11.30216 -11.15615 -11.10741 -10.84950 -10.31563 -9.40678 -9.22959 -8.66949 -8.37681 -6.13921 1.31351 1.38202 1.49337 1.74331 2.27936 2.72660 2.89567 2.96427 3.09696 3.32710 3.75578 3.86815 3.93915 4.04972 4.07975 4.16662 4.18867 4.31676 4.33117 4.40208 4.44681 4.48454 4.53258 4.59018 4.70657 4.72252 4.75921 4.81080 4.82542 4.85768 4.91931 5.04264 5.04934 5.07777 5.18863 5.28585 5.30622 5.33741 5.39783 5.96682 5.98452 6.17028 6.18142 6.18745 7.04509 8.72004 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.042449 B = 0.002384 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.462177 B =11744.293516 C =12099.318300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.013 3.987 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.199 6.199 10 C -0.086 4.086 11 C -0.080 4.080 12 C 0.072 3.928 13 N -0.548 5.548 14 C 0.058 3.942 15 C 0.061 3.939 16 N -0.545 5.545 17 C 0.091 3.909 18 C -0.160 4.160 19 C -0.176 4.176 20 C -0.175 4.175 21 C 0.063 3.937 22 C 0.054 3.946 23 H 0.271 0.729 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.034 0.966 42 H 0.088 0.912 43 H 0.036 0.964 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.385 -26.114 2.596 27.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.029 5.971 10 C -0.236 4.236 11 C -0.119 4.119 12 C -0.057 4.057 13 N -0.273 5.273 14 C -0.070 4.070 15 C -0.067 4.067 16 N -0.270 5.270 17 C -0.037 4.037 18 C -0.178 4.178 19 C -0.214 4.214 20 C -0.212 4.212 21 C -0.065 4.065 22 C -0.074 4.074 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.052 0.948 42 H 0.106 0.894 43 H 0.054 0.946 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.110 -26.207 2.586 26.826 hybrid contribution 1.421 1.484 0.066 2.056 sum 6.531 -24.723 2.652 25.709 Atomic orbital electron populations 1.70165 1.07689 1.28480 1.48076 1.26097 0.96074 1.03187 0.93808 0.84945 0.78410 0.76571 0.78302 1.18647 1.19637 1.19660 1.23070 0.94719 0.91957 1.58703 0.90925 1.84652 1.14163 1.01230 1.97023 1.23147 1.00084 0.97483 1.02873 1.21142 0.97963 0.90320 1.02503 1.21972 0.95552 0.86956 1.01237 1.62135 1.27837 1.02402 1.34937 1.22200 0.92185 0.91195 1.01459 1.22156 0.98342 0.96200 0.89972 1.62146 1.27278 1.02692 1.34892 1.21640 0.98363 0.89049 0.94633 1.22269 1.05114 0.92835 0.97607 1.23040 0.96177 0.98488 1.03663 1.23049 0.95751 1.02017 1.00336 1.22127 0.92458 0.90656 1.01298 1.22205 0.98324 0.96698 0.90179 0.91967 0.92115 0.91799 0.91684 0.92032 0.94677 0.89954 0.94415 0.89220 0.88622 0.94499 0.89840 0.94617 0.88264 0.88170 0.88315 0.88774 0.88321 0.94762 0.89401 0.94593 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.40 13.22 21.65 0.29 -55.11 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 44.38 29.55 68.60 2.03 46.40 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.44 9.50 67.96 0.65 -30.80 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 9 S -0.20 -10.82 21.44 -56.49 -1.21 -12.03 16 10 C -0.09 -3.53 5.67 71.98 0.41 -3.12 16 11 C -0.08 -2.67 5.15 30.59 0.16 -2.51 16 12 C 0.07 1.92 4.96 86.30 0.43 2.35 16 13 N -0.55 -13.35 4.71 -895.69 -4.22 -17.57 16 14 C 0.06 1.14 5.61 86.31 0.48 1.62 16 15 C 0.06 1.07 5.61 86.31 0.48 1.55 16 16 N -0.55 -10.10 4.71 -895.69 -4.22 -14.32 16 17 C 0.09 1.37 5.24 86.31 0.45 1.82 16 18 C -0.16 -2.32 5.68 -10.79 -0.06 -2.38 16 19 C -0.18 -2.07 10.25 30.60 0.31 -1.75 16 20 C -0.17 -2.17 10.18 30.60 0.31 -1.86 16 21 C 0.06 1.28 5.44 86.31 0.47 1.75 16 22 C 0.05 1.28 5.41 86.31 0.47 1.75 16 23 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 24 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.06 2.08 6.49 -2.39 -0.02 2.07 16 28 H 0.03 0.93 8.12 -2.38 -0.02 0.91 16 29 H 0.08 2.05 8.03 -2.38 -0.02 2.03 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.57 8.07 -2.39 -0.02 1.55 16 32 H 0.10 1.31 8.07 -2.38 -0.02 1.29 16 33 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 1.10 7.76 -2.39 -0.02 1.08 16 35 H 0.04 0.56 8.12 -2.39 -0.02 0.54 16 36 H 0.10 1.62 6.37 -2.39 -0.02 1.61 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 1.11 8.03 -2.39 -0.02 1.09 16 41 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 1.62 6.25 -2.39 -0.01 1.61 16 43 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 1.94 6.34 -2.39 -0.02 1.93 16 Total: -1.00 -66.23 358.33 -1.37 -67.60 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.94 Total: 15.39 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 5.03 Total: -30.37 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -8.15 Total: -87.00 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -10.82 SS G_CDS: -1.21 Total: -12.03 kcal Total: -66.23 -1.37 -67.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.489 kcal (2) G-P(sol) polarization free energy of solvation -66.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds