Wall clock time and date at job start Tue Mar 31 2020 06:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99866 * 2 1 4 4 H 1.48504 * 109.47111 * 269.99867 * 3 2 1 5 5 H 1.48499 * 109.47071 * 29.99741 * 3 2 1 6 6 H 1.48498 * 109.46990 * 150.00249 * 3 2 1 7 7 C 1.38816 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99717 * 223.78589 * 7 2 1 9 9 N 1.36934 * 119.99770 * 43.50788 * 7 2 1 10 10 C 1.46503 * 119.99915 * 346.86559 * 9 7 2 11 11 C 1.50692 * 109.47440 * 81.38008 * 10 9 7 12 12 C 1.36658 * 120.12141 * 247.06352 * 11 10 9 13 13 C 1.38788 * 120.52921 * 179.97438 * 12 11 10 14 14 C 1.37788 * 120.66846 * 359.97438 * 13 12 11 15 15 C 1.39079 * 119.77834 * 0.02562 * 14 13 12 16 16 N 1.37689 * 133.51944 * 179.97438 * 15 14 13 17 17 H 0.97006 * 125.06131 * 0.02798 * 16 15 14 18 18 C 1.36832 * 109.87882 * 180.02562 * 16 15 14 19 19 C 1.34231 * 109.93698 * 0.02562 * 18 16 15 20 20 C 1.39598 * 120.11668 * 66.78150 * 11 10 9 21 21 C 1.46503 * 119.99954 * 166.86658 * 9 7 2 22 22 C 1.54270 * 110.02976 * 57.90576 * 21 9 7 23 23 C 1.54964 * 104.15613 * 217.13460 * 22 21 9 24 24 C 1.54893 * 102.77817 * 37.89147 * 23 22 21 25 25 C 1.53869 * 110.03047 * 300.68883 * 21 9 7 26 26 H 0.97003 * 120.00006 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46742 * 201.38113 * 10 9 7 28 28 H 1.09003 * 109.47274 * 321.37226 * 10 9 7 29 29 H 1.08003 * 119.73394 * 359.97438 * 12 11 10 30 30 H 1.08003 * 119.66285 * 179.97438 * 13 12 11 31 31 H 1.08000 * 120.11168 * 179.97438 * 14 13 12 32 32 H 1.07999 * 125.03209 * 180.02562 * 18 16 15 33 33 H 1.08007 * 126.50200 * 180.02562 * 19 18 16 34 34 H 1.08996 * 110.01456 * 179.29534 * 21 9 7 35 35 H 1.08995 * 110.48805 * 335.78373 * 22 21 9 36 36 H 1.08997 * 110.48072 * 98.42932 * 22 21 9 37 37 H 1.08995 * 110.72523 * 279.57652 * 23 22 21 38 38 H 1.09001 * 110.92321 * 156.29742 * 23 22 21 39 39 H 1.08993 * 110.48420 * 203.40142 * 24 23 22 40 40 H 1.08999 * 110.59807 * 80.81310 * 24 23 22 41 41 H 1.08998 * 110.03444 * 238.56781 * 25 21 9 42 42 H 1.08999 * 110.03420 * 359.95038 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 2.8650 -1.3324 0.6466 9 7 1.6078 -2.2248 -0.8174 10 6 0.2975 -2.1683 -1.4703 11 6 0.3876 -1.3077 -2.7040 12 6 -0.2756 -0.1140 -2.7574 13 6 -0.1981 0.6856 -3.8892 14 6 0.5484 0.2916 -4.9783 15 6 1.2315 -0.9194 -4.9458 16 7 2.0394 -1.5767 -5.8465 17 1 2.2713 -1.2490 -6.7296 18 6 2.4667 -2.7609 -5.3104 19 6 1.9642 -2.9116 -4.0748 20 6 1.1536 -1.7242 -3.7942 21 6 2.4874 -3.3753 -1.0385 22 6 2.8286 -4.0461 0.3082 23 6 4.3066 -4.4840 0.1499 24 6 4.9268 -3.3129 -0.6521 25 6 3.8208 -2.9096 -1.6491 26 1 -0.4850 0.8401 0.0004 27 1 -0.0120 -3.1750 -1.7514 28 1 -0.4331 -1.7424 -0.7826 29 1 -0.8648 0.2097 -1.9121 30 1 -0.7282 1.6261 -3.9164 31 1 0.6021 0.9206 -5.8545 32 1 3.1125 -3.4694 -5.8077 33 1 2.1303 -3.7475 -3.4113 34 1 2.0037 -4.0928 -1.7011 35 1 2.7277 -3.3327 1.1261 36 1 2.1889 -4.9126 0.4755 37 1 4.3748 -5.4156 -0.4118 38 1 4.7890 -4.5846 1.1221 39 1 5.8179 -3.6451 -1.1846 40 1 5.1667 -2.4801 0.0089 41 1 3.9847 -3.4019 -2.6077 42 1 3.8131 -1.8277 -1.7818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093563431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:56 Heat of formation + Delta-G solvation = 89.768601 kcal Electronic energy + Delta-G solvation = -23607.159643 eV Core-core repulsion = 20553.382533 eV Total energy + Delta-G solvation = -3053.777110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.50530 -37.81376 -36.36605 -34.21181 -31.58475 -30.68869 -28.99878 -28.26055 -27.80600 -26.51360 -25.31322 -22.61775 -21.03142 -20.96079 -20.14539 -19.48323 -18.95553 -17.10002 -16.11029 -15.54716 -15.28860 -14.72924 -14.57383 -14.01167 -13.81916 -13.58037 -13.28854 -12.87298 -12.77139 -12.46799 -12.17752 -11.91487 -11.30142 -11.11662 -10.93029 -10.76875 -10.69039 -10.52303 -10.41574 -10.27738 -10.24176 -10.04063 -9.94306 -9.74754 -9.58951 -9.54465 -8.82937 -8.13541 -7.41257 -6.80971 -6.77314 -5.84049 -2.91242 1.93987 2.56518 3.38184 3.50830 3.58977 3.66408 3.69798 4.58159 4.83339 5.21420 5.36813 5.41774 5.44181 5.49803 5.56542 5.75644 5.81291 5.97183 6.07583 6.17036 6.25048 6.28854 6.33550 6.42870 6.45285 6.52579 6.59607 6.61222 6.69456 6.71690 6.84139 6.87110 6.98133 7.03362 7.19522 7.33732 7.40095 7.44464 7.53591 7.66376 7.98003 7.99922 8.09684 8.12321 8.46307 9.26705 9.98863 10.45194 11.16253 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.009981 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.363414 B = 2804.686597 C = 4162.976168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.031 3.969 3 Si 0.845 3.155 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.079 0.921 9 N -0.577 5.577 10 C 0.170 3.830 11 C -0.008 4.008 12 C -0.133 4.133 13 C -0.103 4.103 14 C -0.163 4.163 15 C 0.082 3.918 16 N -0.606 5.606 17 H 0.404 0.596 18 C 0.017 3.983 19 C -0.182 4.182 20 C -0.095 4.095 21 C 0.180 3.820 22 C -0.139 4.139 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.131 4.131 26 H 0.254 0.746 27 H 0.024 0.976 28 H 0.118 0.882 29 H 0.142 0.858 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.157 0.843 33 H 0.143 0.857 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 -5.897 -8.322 10.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.169 4.169 3 Si 0.674 3.326 4 H -0.215 1.215 5 H -0.226 1.226 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.097 0.903 9 N -0.296 5.296 10 C 0.044 3.956 11 C -0.011 4.011 12 C -0.153 4.153 13 C -0.123 4.123 14 C -0.184 4.184 15 C -0.023 4.023 16 N -0.211 5.211 17 H 0.239 0.761 18 C -0.108 4.108 19 C -0.208 4.208 20 C -0.100 4.100 21 C 0.072 3.928 22 C -0.178 4.178 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.170 4.170 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.135 0.865 29 H 0.160 0.840 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.174 0.826 33 H 0.160 0.840 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.882 -5.794 -8.371 10.580 hybrid contribution 0.976 1.376 -0.708 1.830 sum 3.858 -4.418 -9.079 10.809 Atomic orbital electron populations 1.70191 1.05925 1.25656 1.48353 1.24445 0.94474 0.97061 1.00947 0.87090 0.81273 0.86232 0.78002 1.21538 1.22557 1.20841 1.18839 1.11490 0.89796 1.18492 0.90328 1.44089 1.14108 1.20078 1.51276 1.20367 0.89833 0.93838 0.91541 1.20190 0.91349 0.95535 0.94010 1.21135 1.02163 0.94365 0.97601 1.20836 0.98812 0.99151 0.93479 1.19725 1.03587 0.95209 0.99920 1.18247 0.97510 0.95604 0.90954 1.41609 1.44772 1.18586 1.16085 0.76093 1.21556 1.03659 0.89608 0.95975 1.21879 1.03251 0.99757 0.95883 1.19111 1.01715 0.95294 0.93886 1.20954 0.90248 0.88476 0.93147 1.22934 0.94061 0.99652 1.01192 1.22432 0.97115 0.97557 0.98953 1.22292 0.97490 0.97783 0.98293 1.22660 0.95230 1.02542 0.96576 0.93516 0.95821 0.86459 0.84024 0.87307 0.88042 0.82590 0.83959 0.92865 0.90341 0.93361 0.92703 0.92938 0.93468 0.92190 0.93430 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.55 8.14 55.49 0.45 -22.10 16 2 C 0.03 0.81 4.23 -17.43 -0.07 0.74 16 3 Si 0.85 21.45 29.69 -169.99 -5.05 16.41 16 4 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 5 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 7 C -0.26 -6.70 7.81 -15.06 -0.12 -6.81 16 8 H 0.08 2.08 7.24 -52.49 -0.38 1.70 16 9 N -0.58 -13.34 2.45 -165.75 -0.41 -13.74 16 10 C 0.17 3.91 5.24 -5.20 -0.03 3.88 16 11 C -0.01 -0.17 4.97 -104.69 -0.52 -0.69 16 12 C -0.13 -2.96 8.43 -39.95 -0.34 -3.29 16 13 C -0.10 -2.06 10.01 -39.54 -0.40 -2.45 16 14 C -0.16 -3.05 10.08 -39.43 -0.40 -3.45 16 15 C 0.08 1.58 7.28 -83.99 -0.61 0.97 16 16 N -0.61 -9.26 6.07 -10.65 -0.06 -9.33 16 17 H 0.40 4.72 8.96 -40.82 -0.37 4.35 16 18 C 0.02 0.25 11.81 -16.73 -0.20 0.05 16 19 C -0.18 -3.25 8.64 -37.67 -0.33 -3.58 16 20 C -0.10 -1.99 6.12 -105.13 -0.64 -2.63 16 21 C 0.18 3.51 2.48 -66.81 -0.17 3.35 16 22 C -0.14 -2.53 6.37 -25.03 -0.16 -2.69 16 23 C -0.12 -1.90 6.91 -24.70 -0.17 -2.07 16 24 C -0.12 -2.01 6.83 -25.07 -0.17 -2.18 16 25 C -0.13 -2.44 5.16 -25.62 -0.13 -2.57 16 26 H 0.25 6.53 7.92 -40.82 -0.32 6.20 16 27 H 0.02 0.51 7.76 -51.93 -0.40 0.11 16 28 H 0.12 2.99 5.41 -51.93 -0.28 2.71 16 29 H 0.14 3.29 5.63 -52.48 -0.30 2.99 16 30 H 0.11 1.88 8.06 -52.48 -0.42 1.46 16 31 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.14 2.44 4.62 -52.48 -0.24 2.20 16 34 H 0.05 0.99 5.84 -51.93 -0.30 0.69 16 35 H 0.08 1.63 6.60 -51.93 -0.34 1.29 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.81 6.69 -51.93 -0.35 0.46 16 42 H 0.07 1.69 7.34 -51.93 -0.38 1.31 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -28.21 318.93 -10.55 -38.76 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.84 Total: 8.62 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -4.45 Total: -23.43 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.02 Total: -45.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.05 Total: 16.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.21 -10.55 -38.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093563431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.526 kcal (2) G-P(sol) polarization free energy of solvation -28.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds