Wall clock time and date at job start Tue Mar 31 2020 06:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99866 * 2 1 4 4 H 1.48504 * 109.47111 * 269.99867 * 3 2 1 5 5 H 1.48499 * 109.47071 * 29.99741 * 3 2 1 6 6 H 1.48498 * 109.46990 * 150.00249 * 3 2 1 7 7 C 1.38816 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99717 * 223.78589 * 7 2 1 9 9 N 1.36934 * 119.99770 * 43.50788 * 7 2 1 10 10 C 1.46503 * 119.99915 * 346.86559 * 9 7 2 11 11 C 1.50692 * 109.47440 * 81.38008 * 10 9 7 12 12 C 1.36658 * 120.12141 * 247.06352 * 11 10 9 13 13 C 1.38788 * 120.52921 * 179.97438 * 12 11 10 14 14 C 1.37788 * 120.66846 * 359.97438 * 13 12 11 15 15 C 1.39079 * 119.77834 * 0.02562 * 14 13 12 16 16 N 1.37689 * 133.51944 * 179.97438 * 15 14 13 17 17 H 0.97006 * 125.06131 * 0.02798 * 16 15 14 18 18 C 1.36832 * 109.87882 * 180.02562 * 16 15 14 19 19 C 1.34231 * 109.93698 * 0.02562 * 18 16 15 20 20 C 1.39598 * 120.11668 * 66.78150 * 11 10 9 21 21 C 1.46503 * 119.99954 * 166.86658 * 9 7 2 22 22 C 1.54270 * 110.02976 * 57.90576 * 21 9 7 23 23 C 1.54964 * 104.15613 * 217.13460 * 22 21 9 24 24 C 1.54893 * 102.77817 * 37.89147 * 23 22 21 25 25 C 1.53869 * 110.03047 * 300.68883 * 21 9 7 26 26 H 0.97003 * 120.00006 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46742 * 201.38113 * 10 9 7 28 28 H 1.09003 * 109.47274 * 321.37226 * 10 9 7 29 29 H 1.08003 * 119.73394 * 359.97438 * 12 11 10 30 30 H 1.08003 * 119.66285 * 179.97438 * 13 12 11 31 31 H 1.08000 * 120.11168 * 179.97438 * 14 13 12 32 32 H 1.07999 * 125.03209 * 180.02562 * 18 16 15 33 33 H 1.08007 * 126.50200 * 180.02562 * 19 18 16 34 34 H 1.08996 * 110.01456 * 179.29534 * 21 9 7 35 35 H 1.08995 * 110.48805 * 335.78373 * 22 21 9 36 36 H 1.08997 * 110.48072 * 98.42932 * 22 21 9 37 37 H 1.08995 * 110.72523 * 279.57652 * 23 22 21 38 38 H 1.09001 * 110.92321 * 156.29742 * 23 22 21 39 39 H 1.08993 * 110.48420 * 203.40142 * 24 23 22 40 40 H 1.08999 * 110.59807 * 80.81310 * 24 23 22 41 41 H 1.08998 * 110.03444 * 238.56781 * 25 21 9 42 42 H 1.08999 * 110.03420 * 359.95038 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 2.8650 -1.3324 0.6466 9 7 1.6078 -2.2248 -0.8174 10 6 0.2975 -2.1683 -1.4703 11 6 0.3876 -1.3077 -2.7040 12 6 -0.2756 -0.1140 -2.7574 13 6 -0.1981 0.6856 -3.8892 14 6 0.5484 0.2916 -4.9783 15 6 1.2315 -0.9194 -4.9458 16 7 2.0394 -1.5767 -5.8465 17 1 2.2713 -1.2490 -6.7296 18 6 2.4667 -2.7609 -5.3104 19 6 1.9642 -2.9116 -4.0748 20 6 1.1536 -1.7242 -3.7942 21 6 2.4874 -3.3753 -1.0385 22 6 2.8286 -4.0461 0.3082 23 6 4.3066 -4.4840 0.1499 24 6 4.9268 -3.3129 -0.6521 25 6 3.8208 -2.9096 -1.6491 26 1 -0.4850 0.8401 0.0004 27 1 -0.0120 -3.1750 -1.7514 28 1 -0.4331 -1.7424 -0.7826 29 1 -0.8648 0.2097 -1.9121 30 1 -0.7282 1.6261 -3.9164 31 1 0.6021 0.9206 -5.8545 32 1 3.1125 -3.4694 -5.8077 33 1 2.1303 -3.7475 -3.4113 34 1 2.0037 -4.0928 -1.7011 35 1 2.7277 -3.3327 1.1261 36 1 2.1889 -4.9126 0.4755 37 1 4.3748 -5.4156 -0.4118 38 1 4.7890 -4.5846 1.1221 39 1 5.8179 -3.6451 -1.1846 40 1 5.1667 -2.4801 0.0089 41 1 3.9847 -3.4019 -2.6077 42 1 3.8131 -1.8277 -1.7818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093563431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:55 Heat of formation + Delta-G solvation = 76.188159 kcal Electronic energy + Delta-G solvation = -23607.748535 eV Core-core repulsion = 20553.382533 eV Total energy + Delta-G solvation = -3054.366002 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.89014 -39.37263 -37.84991 -35.88067 -33.34040 -32.32865 -30.45390 -29.69587 -29.24029 -28.11371 -27.09562 -24.32461 -22.49877 -22.46598 -21.51757 -20.84238 -20.61449 -18.63967 -17.83259 -17.15870 -16.81685 -16.25815 -16.07922 -15.84631 -15.26685 -15.06920 -14.80428 -14.58419 -14.32404 -14.02533 -13.51741 -13.31356 -13.13393 -12.89537 -12.64723 -12.48334 -12.38310 -12.19888 -12.04378 -11.77691 -11.72028 -11.67947 -11.61640 -11.37258 -11.19147 -11.12757 -10.37020 -10.01066 -8.89035 -8.65137 -8.25328 -7.83930 -4.90880 0.48553 1.01056 1.41205 1.50312 1.54237 2.06061 2.47269 2.58444 3.15017 3.28085 3.86408 4.03727 4.06874 4.14167 4.25747 4.33556 4.38762 4.57152 4.62837 4.77938 4.81608 4.83193 4.92652 4.99736 5.01761 5.03795 5.10164 5.21091 5.26734 5.28086 5.36031 5.38479 5.48128 5.61702 5.69599 5.74525 5.81360 5.85954 5.93186 6.01863 6.07565 6.31539 6.50105 6.61711 6.96390 7.28927 8.08509 8.50333 9.12786 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.009981 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.363414 B = 2804.686597 C = 4162.976168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.000 4.000 3 Si 0.876 3.124 4 H -0.307 1.307 5 H -0.301 1.301 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.067 0.933 9 N -0.584 5.584 10 C 0.177 3.823 11 C -0.034 4.034 12 C -0.154 4.154 13 C -0.124 4.124 14 C -0.155 4.155 15 C 0.065 3.935 16 N -0.590 5.590 17 H 0.425 0.575 18 C 0.052 3.948 19 C -0.218 4.218 20 C -0.117 4.117 21 C 0.174 3.826 22 C -0.139 4.139 23 C -0.110 4.110 24 C -0.119 4.119 25 C -0.120 4.120 26 H 0.250 0.750 27 H 0.031 0.969 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.209 0.791 33 H 0.146 0.854 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.070 0.930 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 -7.815 -10.874 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.199 4.199 3 Si 0.707 3.293 4 H -0.236 1.236 5 H -0.229 1.229 6 H -0.209 1.209 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.303 5.303 10 C 0.051 3.949 11 C -0.037 4.037 12 C -0.174 4.174 13 C -0.143 4.143 14 C -0.176 4.176 15 C -0.042 4.042 16 N -0.195 5.195 17 H 0.264 0.736 18 C -0.074 4.074 19 C -0.243 4.243 20 C -0.122 4.122 21 C 0.067 3.933 22 C -0.178 4.178 23 C -0.148 4.148 24 C -0.157 4.157 25 C -0.159 4.159 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.104 0.896 29 H 0.138 0.862 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.225 0.775 33 H 0.163 0.837 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.988 -7.722 -10.941 14.290 hybrid contribution 0.357 1.895 -0.009 1.928 sum 5.344 -5.827 -10.951 13.507 Atomic orbital electron populations 1.70269 1.06021 1.25347 1.49333 1.24704 0.94869 0.97958 1.02355 0.86550 0.80718 0.85426 0.76606 1.23572 1.22905 1.20911 1.18843 1.10431 0.90649 1.17948 0.91494 1.44182 1.14708 1.20574 1.50829 1.20123 0.89156 0.94100 0.91475 1.20100 0.93175 0.95863 0.94581 1.21078 1.02911 0.95333 0.98109 1.21036 1.00014 0.99820 0.93412 1.20065 1.01907 0.95338 1.00272 1.18408 0.98418 0.95845 0.91535 1.41645 1.43232 1.18222 1.16427 0.73604 1.22275 1.01361 0.89088 0.94638 1.21970 1.04990 0.99561 0.97789 1.19420 1.01822 0.97065 0.93901 1.21198 0.90295 0.87560 0.94232 1.22862 0.96757 0.99149 0.99023 1.22386 0.94445 0.98022 0.99908 1.22284 0.97967 0.97642 0.97796 1.22493 0.95356 0.99812 0.98229 0.93909 0.95118 0.89575 0.86206 0.85537 0.84739 0.77469 0.83687 0.91639 0.93670 0.92204 0.89889 0.91723 0.90569 0.94304 0.91134 0.94928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.84 8.14 21.65 0.18 -47.67 16 2 C 0.00 0.00 4.23 84.86 0.36 0.35 16 3 Si 0.88 45.61 29.69 68.60 2.04 47.65 16 4 H -0.31 -16.76 7.11 99.48 0.71 -16.06 16 5 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 6 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 7 C -0.25 -13.41 7.81 84.03 0.66 -12.76 16 8 H 0.07 3.69 7.24 -2.91 -0.02 3.67 16 9 N -0.58 -27.67 2.45 -678.32 -1.66 -29.33 16 10 C 0.18 8.49 5.24 85.63 0.45 8.94 16 11 C -0.03 -1.58 4.97 -19.91 -0.10 -1.68 16 12 C -0.15 -7.18 8.43 22.03 0.19 -6.99 16 13 C -0.12 -4.96 10.01 22.29 0.22 -4.74 16 14 C -0.15 -5.55 10.08 22.37 0.23 -5.33 16 15 C 0.06 2.35 7.28 39.03 0.28 2.63 16 16 N -0.59 -15.61 6.07 -187.62 -1.14 -16.74 16 17 H 0.43 7.83 8.96 -92.70 -0.83 7.00 16 18 C 0.05 1.30 11.81 83.00 0.98 2.28 16 19 C -0.22 -7.24 8.64 23.51 0.20 -7.04 16 20 C -0.12 -4.80 6.12 -20.20 -0.12 -4.93 16 21 C 0.17 6.68 2.48 45.71 0.11 6.79 16 22 C -0.14 -4.91 6.37 31.70 0.20 -4.70 16 23 C -0.11 -3.08 6.91 31.91 0.22 -2.85 16 24 C -0.12 -3.68 6.83 31.67 0.22 -3.47 16 25 C -0.12 -4.28 5.16 31.32 0.16 -4.12 16 26 H 0.25 13.60 7.92 -92.71 -0.73 12.86 16 27 H 0.03 1.37 7.76 -2.39 -0.02 1.35 16 28 H 0.09 4.66 5.41 -2.39 -0.01 4.64 16 29 H 0.12 5.97 5.63 -2.91 -0.02 5.96 16 30 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 32 H 0.21 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.15 4.62 4.62 -2.91 -0.01 4.60 16 34 H 0.07 2.35 5.84 -2.39 -0.01 2.33 16 35 H 0.04 1.90 6.60 -2.39 -0.02 1.88 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 2.17 6.69 -2.39 -0.02 2.16 16 42 H 0.03 1.45 7.34 -2.39 -0.02 1.43 16 Total: -1.00 -64.72 318.93 3.92 -60.80 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.24 Total: 22.91 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 4.26 Total: -37.62 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -2.62 Total: -93.74 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.04 Total: 47.65 kcal Total: -64.72 3.92 -60.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093563431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.993 kcal (2) G-P(sol) polarization free energy of solvation -64.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds