Wall clock time and date at job start Tue Mar 31 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47331 * 2 1 4 4 C 1.46904 * 111.00076 * 302.64945 * 3 2 1 5 5 C 1.50699 * 109.46620 * 296.30622 * 4 3 2 6 6 H 1.08001 * 119.99974 * 354.80160 * 5 4 3 7 7 C 1.37873 * 120.00162 * 174.80726 * 5 4 3 8 8 N 1.31518 * 120.00007 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00447 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47288 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47431 * 119.99737 * 9 7 5 12 12 H 1.48502 * 109.47554 * 240.00095 * 9 7 5 13 13 C 1.46906 * 110.99626 * 66.59296 * 3 2 1 14 14 N 1.46500 * 109.46741 * 66.05269 * 13 3 2 15 15 N 1.40178 * 126.35739 * 90.02348 * 14 13 3 16 16 C 1.29413 * 108.13190 * 179.97438 * 15 14 13 17 17 C 1.50700 * 125.57897 * 180.02562 * 16 15 14 18 18 N 1.37307 * 108.84043 * 0.02562 * 16 15 14 19 19 C 1.46498 * 125.83026 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.47417 * 89.99726 * 19 18 16 21 21 C 1.34820 * 108.34227 * 0.25886 * 18 16 15 22 22 S 1.71196 * 126.30300 * 179.73354 * 21 18 16 23 23 H 1.09006 * 109.47033 * 65.84337 * 1 2 3 24 24 H 1.08998 * 109.46824 * 185.84317 * 1 2 3 25 25 H 1.09002 * 109.46946 * 305.84874 * 1 2 3 26 26 H 1.09000 * 109.47286 * 240.00108 * 2 1 3 27 27 H 1.09000 * 109.46971 * 119.99950 * 2 1 3 28 28 H 1.09002 * 109.47300 * 56.30459 * 4 3 2 29 29 H 1.09003 * 109.47117 * 176.31041 * 4 3 2 30 30 H 0.96997 * 120.00021 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47565 * 306.04807 * 13 3 2 32 32 H 1.09003 * 109.47044 * 186.04282 * 13 3 2 33 33 H 1.09002 * 109.47205 * 269.97953 * 17 16 15 34 34 H 1.09009 * 109.47155 * 29.97719 * 17 16 15 35 35 H 1.09004 * 109.47541 * 149.97396 * 17 16 15 36 36 H 1.09003 * 109.47113 * 329.99387 * 19 18 16 37 37 H 1.09005 * 109.46898 * 209.99391 * 19 18 16 38 38 H 1.09003 * 109.46967 * 60.00213 * 20 19 18 39 39 H 1.08994 * 109.46886 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.46905 * 300.00234 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4977 2.1280 -1.1548 5 6 2.0195 1.5109 -2.4267 6 1 2.7389 0.7066 -2.3811 7 6 1.5787 1.9730 -3.6486 8 7 0.7031 2.9527 -3.7041 9 14 2.2261 1.2085 -5.2252 10 1 3.1943 0.1328 -4.8926 11 1 1.0952 0.6344 -5.9977 12 1 2.9030 2.2502 -6.0389 13 6 1.6815 2.0629 1.2587 14 7 2.4116 1.4351 2.3628 15 7 3.6815 1.7983 2.8322 16 6 3.9870 1.0140 3.8152 17 6 5.2674 1.0604 4.6086 18 7 2.9536 0.1328 4.0171 19 6 2.9092 -0.9177 5.0372 20 6 2.2861 -0.3589 6.3180 21 6 1.9889 0.3959 3.1128 22 16 0.4996 -0.4325 2.9493 23 1 -0.3633 0.4206 -0.9377 24 1 -0.3633 -1.0223 0.1046 25 1 -0.3633 0.6019 0.8330 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.4084 2.0867 -1.1511 29 1 1.8222 3.1669 -1.0952 30 1 0.3927 3.2776 -4.5638 31 1 0.6097 1.9812 1.4388 32 1 1.9595 3.1147 1.1909 33 1 6.0087 0.4128 4.1403 34 1 5.6427 2.0836 4.6334 35 1 5.0771 0.7185 5.6260 36 1 3.9213 -1.2639 5.2465 37 1 2.3078 -1.7513 4.6744 38 1 1.2739 -0.0128 6.1087 39 1 2.2536 -1.1404 7.0771 40 1 2.8875 0.4747 6.6808 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102391090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:20 Heat of formation + Delta-G solvation = 101.947836 kcal Electronic energy + Delta-G solvation = -21072.686651 eV Core-core repulsion = 18051.341280 eV Total energy + Delta-G solvation = -3021.345371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.68941 -37.68627 -35.72533 -33.58639 -32.48972 -31.16905 -29.60537 -29.08508 -27.10798 -25.33180 -23.82144 -23.11844 -22.71179 -21.11291 -19.68272 -17.72718 -16.86579 -16.62658 -16.24312 -15.64471 -15.03649 -14.98398 -14.52136 -14.20072 -14.00283 -13.68075 -13.23790 -13.14697 -12.73426 -12.62205 -12.38972 -11.92892 -11.78572 -11.56410 -11.43948 -11.19083 -11.09307 -10.90829 -10.74100 -10.68053 -10.56548 -10.18552 -9.92912 -9.69442 -9.25650 -8.45135 -7.43406 -7.40332 -7.10447 -6.04103 -4.04959 1.25058 1.46649 1.64947 2.45031 2.53623 3.31682 3.39076 3.44249 3.99699 4.19968 4.41784 4.42697 4.62975 4.86871 4.90515 4.95439 5.01681 5.09533 5.21434 5.32216 5.35899 5.53904 5.64000 5.68586 5.78985 6.07549 6.20587 6.31665 6.47477 6.54415 6.83336 6.91247 7.16724 7.27339 7.30983 7.44179 7.74384 7.98099 8.10250 8.44864 9.01629 9.58910 11.06736 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.027051 B = 0.004499 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.832756 B = 6222.686313 C = 6712.421662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.063 3.937 3 N -0.545 5.545 4 C 0.195 3.805 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.298 3.702 14 N -0.351 5.351 15 N -0.262 5.262 16 C 0.252 3.748 17 C -0.074 4.074 18 N -0.497 5.497 19 C 0.111 3.889 20 C -0.168 4.168 21 C 0.461 3.539 22 S -0.588 6.588 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.013 0.987 29 H 0.027 0.973 30 H 0.261 0.739 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.949 -4.690 20.827 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.065 4.065 3 N -0.271 5.271 4 C 0.071 3.929 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.088 3.912 14 N -0.143 5.143 15 N -0.083 5.083 16 C -0.028 4.028 17 C -0.133 4.133 18 N -0.199 5.199 19 C -0.010 4.010 20 C -0.227 4.227 21 C 0.100 3.900 22 S -0.460 6.460 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.753 -4.204 19.872 21.741 hybrid contribution 0.004 -0.484 -0.470 0.675 sum 7.757 -4.688 19.402 21.415 Atomic orbital electron populations 1.22282 0.97558 1.01592 1.01359 1.22068 0.93965 0.89413 1.01062 1.62361 1.60283 1.03517 1.00947 1.19778 0.94567 0.93125 0.85463 1.21069 1.24717 1.18838 0.89532 0.91902 1.24946 0.95110 0.95185 0.99169 1.69958 1.31348 1.26988 1.25367 0.86435 0.78713 0.79145 0.83111 1.19725 1.21032 1.21031 1.22439 0.92975 0.95158 0.80624 1.49830 1.11767 1.25160 1.27506 1.77285 0.97889 1.22038 1.11061 1.24809 0.93557 0.88723 0.95669 1.20465 0.88786 1.06023 0.98050 1.46324 1.14112 1.30141 1.29334 1.21960 1.03818 0.88970 0.86278 1.22135 1.02582 1.02002 0.95942 1.23925 0.93660 0.87978 0.84471 1.93358 1.07642 1.60164 1.84842 0.92563 0.93487 0.91903 0.90726 0.92865 0.96886 0.95471 0.92917 0.89294 0.87512 0.88455 0.87972 0.89260 0.88490 0.86881 0.90898 0.90026 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 7.71 37.16 0.29 -3.31 16 2 C 0.06 1.38 5.28 -3.82 -0.02 1.36 16 3 N -0.55 -12.17 4.86 -239.97 -1.17 -13.34 16 4 C 0.19 5.01 4.38 -4.97 -0.02 4.99 16 5 C -0.50 -14.11 8.42 -34.44 -0.29 -14.40 16 6 H 0.06 1.79 7.14 -52.49 -0.37 1.41 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 13 C 0.30 5.70 5.85 -63.31 -0.37 5.33 16 14 N -0.35 -6.11 3.59 -64.99 -0.23 -6.35 16 15 N -0.26 -4.02 12.53 32.96 0.41 -3.60 16 16 C 0.25 2.83 7.98 -154.20 -1.23 1.60 16 17 C -0.07 -0.40 9.98 36.01 0.36 -0.04 16 18 N -0.50 -6.01 2.74 -114.59 -0.31 -6.32 16 19 C 0.11 0.89 6.22 -4.04 -0.03 0.86 16 20 C -0.17 -1.13 10.24 37.16 0.38 -0.75 16 21 C 0.46 7.57 6.61 -86.73 -0.57 7.00 16 22 S -0.59 -11.00 24.76 -107.50 -2.66 -13.66 16 23 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.06 1.32 4.71 -51.93 -0.24 1.08 16 26 H 0.07 1.76 6.89 -51.93 -0.36 1.40 16 27 H 0.05 1.14 5.03 -51.93 -0.26 0.88 16 28 H 0.01 0.36 6.18 -51.93 -0.32 0.04 16 29 H 0.03 0.73 7.98 -51.93 -0.41 0.32 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.09 1.73 5.72 -51.93 -0.30 1.43 16 32 H 0.11 1.94 7.96 -51.93 -0.41 1.53 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.09 0.25 7.71 -51.93 -0.40 -0.15 16 36 H 0.10 0.44 7.65 -51.93 -0.40 0.05 16 37 H 0.11 1.07 7.63 -51.93 -0.40 0.67 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -34.00 329.14 -10.78 -44.78 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.89 Total: -1.77 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.60 Total: 4.16 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.56 Total: -55.29 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -11.00 SS G_CDS: -2.66 Total: -13.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.00 -10.78 -44.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102391090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.728 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds