Wall clock time and date at job start Tue Mar 31 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47331 * 2 1 4 4 C 1.46904 * 111.00076 * 302.64945 * 3 2 1 5 5 C 1.50699 * 109.46620 * 296.30622 * 4 3 2 6 6 H 1.08001 * 119.99974 * 354.80160 * 5 4 3 7 7 C 1.37873 * 120.00162 * 174.80726 * 5 4 3 8 8 N 1.31518 * 120.00007 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00447 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47288 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47431 * 119.99737 * 9 7 5 12 12 H 1.48502 * 109.47554 * 240.00095 * 9 7 5 13 13 C 1.46906 * 110.99626 * 66.59296 * 3 2 1 14 14 N 1.46500 * 109.46741 * 66.05269 * 13 3 2 15 15 N 1.40178 * 126.35739 * 90.02348 * 14 13 3 16 16 C 1.29413 * 108.13190 * 179.97438 * 15 14 13 17 17 C 1.50700 * 125.57897 * 180.02562 * 16 15 14 18 18 N 1.37307 * 108.84043 * 0.02562 * 16 15 14 19 19 C 1.46498 * 125.83026 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.47417 * 89.99726 * 19 18 16 21 21 C 1.34820 * 108.34227 * 0.25886 * 18 16 15 22 22 S 1.71196 * 126.30300 * 179.73354 * 21 18 16 23 23 H 1.09006 * 109.47033 * 65.84337 * 1 2 3 24 24 H 1.08998 * 109.46824 * 185.84317 * 1 2 3 25 25 H 1.09002 * 109.46946 * 305.84874 * 1 2 3 26 26 H 1.09000 * 109.47286 * 240.00108 * 2 1 3 27 27 H 1.09000 * 109.46971 * 119.99950 * 2 1 3 28 28 H 1.09002 * 109.47300 * 56.30459 * 4 3 2 29 29 H 1.09003 * 109.47117 * 176.31041 * 4 3 2 30 30 H 0.96997 * 120.00021 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47565 * 306.04807 * 13 3 2 32 32 H 1.09003 * 109.47044 * 186.04282 * 13 3 2 33 33 H 1.09002 * 109.47205 * 269.97953 * 17 16 15 34 34 H 1.09009 * 109.47155 * 29.97719 * 17 16 15 35 35 H 1.09004 * 109.47541 * 149.97396 * 17 16 15 36 36 H 1.09003 * 109.47113 * 329.99387 * 19 18 16 37 37 H 1.09005 * 109.46898 * 209.99391 * 19 18 16 38 38 H 1.09003 * 109.46967 * 60.00213 * 20 19 18 39 39 H 1.08994 * 109.46886 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.46905 * 300.00234 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4977 2.1280 -1.1548 5 6 2.0195 1.5109 -2.4267 6 1 2.7389 0.7066 -2.3811 7 6 1.5787 1.9730 -3.6486 8 7 0.7031 2.9527 -3.7041 9 14 2.2261 1.2085 -5.2252 10 1 3.1943 0.1328 -4.8926 11 1 1.0952 0.6344 -5.9977 12 1 2.9030 2.2502 -6.0389 13 6 1.6815 2.0629 1.2587 14 7 2.4116 1.4351 2.3628 15 7 3.6815 1.7983 2.8322 16 6 3.9870 1.0140 3.8152 17 6 5.2674 1.0604 4.6086 18 7 2.9536 0.1328 4.0171 19 6 2.9092 -0.9177 5.0372 20 6 2.2861 -0.3589 6.3180 21 6 1.9889 0.3959 3.1128 22 16 0.4996 -0.4325 2.9493 23 1 -0.3633 0.4206 -0.9377 24 1 -0.3633 -1.0223 0.1046 25 1 -0.3633 0.6019 0.8330 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.4084 2.0867 -1.1511 29 1 1.8222 3.1669 -1.0952 30 1 0.3927 3.2776 -4.5638 31 1 0.6097 1.9812 1.4388 32 1 1.9595 3.1147 1.1909 33 1 6.0087 0.4128 4.1403 34 1 5.6427 2.0836 4.6334 35 1 5.0771 0.7185 5.6260 36 1 3.9213 -1.2639 5.2465 37 1 2.3078 -1.7513 4.6744 38 1 1.2739 -0.0128 6.1087 39 1 2.2536 -1.1404 7.0771 40 1 2.8875 0.4747 6.6808 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102391090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:19 Heat of formation + Delta-G solvation = 80.436903 kcal Electronic energy + Delta-G solvation = -21073.619435 eV Core-core repulsion = 18051.341280 eV Total energy + Delta-G solvation = -3022.278155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.82106 -39.35333 -36.84645 -34.95222 -34.27820 -32.12720 -31.09872 -30.36455 -28.72008 -26.82791 -25.15449 -24.64951 -24.05085 -22.10095 -21.43704 -18.92965 -18.41527 -18.06015 -17.73008 -16.98626 -16.75315 -16.58174 -15.91058 -15.39814 -14.93152 -14.73618 -14.40322 -14.18547 -13.89476 -13.68283 -13.63268 -13.34126 -13.16256 -13.11426 -12.74863 -12.74097 -12.63082 -12.52398 -12.44445 -12.12657 -11.97202 -11.80467 -11.48708 -11.42506 -11.24206 -10.62258 -9.23611 -8.86065 -8.59369 -8.21580 -6.30459 -0.04310 0.23391 0.71351 1.12775 1.39616 1.40536 1.53266 1.54906 2.39240 2.95157 3.11987 3.19490 3.46959 3.60069 3.98961 4.04038 4.06492 4.23333 4.26755 4.37351 4.50382 4.62981 4.64430 4.71147 4.73638 4.84529 4.91835 4.96136 5.05855 5.10644 5.22483 5.25427 5.33222 5.49792 5.52997 5.62145 5.94805 6.05998 6.23826 6.41312 6.81908 7.37961 8.89402 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.027051 B = 0.004499 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.832756 B = 6222.686313 C = 6712.421662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.075 3.925 3 N -0.550 5.550 4 C 0.212 3.788 5 C -0.519 4.519 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.276 1.276 13 C 0.307 3.693 14 N -0.364 5.364 15 N -0.304 5.304 16 C 0.277 3.723 17 C -0.075 4.075 18 N -0.485 5.485 19 C 0.101 3.899 20 C -0.161 4.161 21 C 0.461 3.539 22 S -0.649 6.649 23 H 0.030 0.970 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.061 0.939 28 H -0.008 1.008 29 H 0.011 0.989 30 H 0.265 0.735 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.096 0.904 38 H 0.037 0.963 39 H 0.108 0.892 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.615 -5.569 22.693 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.053 4.053 3 N -0.276 5.276 4 C 0.086 3.914 5 C -0.557 4.557 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.201 1.201 13 C 0.097 3.903 14 N -0.154 5.154 15 N -0.125 5.125 16 C -0.001 4.001 17 C -0.134 4.134 18 N -0.185 5.185 19 C -0.018 4.018 20 C -0.219 4.219 21 C 0.096 3.904 22 S -0.522 6.522 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.010 0.990 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.114 0.886 38 H 0.056 0.944 39 H 0.127 0.873 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.458 -5.102 21.802 24.713 hybrid contribution -0.695 -0.208 -0.852 1.119 sum 9.762 -5.310 20.950 23.715 Atomic orbital electron populations 1.22085 0.97229 1.01698 0.99843 1.21910 0.93997 0.89101 1.00252 1.62240 1.60334 1.03536 1.01450 1.19401 0.93108 0.92445 0.86430 1.21290 1.24771 1.18813 0.90837 0.92675 1.25775 0.95196 0.95529 1.02470 1.70063 1.32312 1.28101 1.26408 0.85393 0.78232 0.78446 0.78906 1.19258 1.20448 1.20113 1.22168 0.93098 0.95313 0.79770 1.49512 1.13053 1.25538 1.27259 1.77333 0.96989 1.24518 1.13706 1.26044 0.94148 0.86088 0.93835 1.20925 0.85792 1.07543 0.99091 1.46688 1.12888 1.30383 1.28517 1.22452 1.06587 0.87365 0.85407 1.22107 1.00635 1.03402 0.95785 1.23621 0.93788 0.87572 0.85425 1.93403 1.10513 1.61819 1.86494 0.95145 0.92840 0.91770 0.92729 0.92111 0.98980 0.97081 0.92587 0.90023 0.86938 0.86293 0.86860 0.85510 0.83625 0.88567 0.94373 0.87344 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.64 7.71 71.98 0.56 -6.08 16 2 C 0.08 3.40 5.28 86.30 0.46 3.86 16 3 N -0.55 -25.33 4.86 -913.13 -4.44 -29.77 16 4 C 0.21 11.32 4.38 85.56 0.37 11.70 16 5 C -0.52 -29.82 8.42 25.60 0.22 -29.61 16 6 H 0.06 3.20 7.14 -2.91 -0.02 3.18 16 7 C 0.01 0.51 5.46 84.65 0.46 0.97 16 8 N -0.93 -55.65 13.29 21.45 0.28 -55.37 16 9 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 C 0.31 12.13 5.85 170.80 1.00 13.13 16 14 N -0.36 -12.67 3.59 -359.53 -1.29 -13.96 16 15 N -0.30 -8.91 12.53 -49.62 -0.62 -9.53 16 16 C 0.28 5.36 7.98 137.70 1.10 6.46 16 17 C -0.07 -0.41 9.98 71.24 0.71 0.30 16 18 N -0.48 -10.61 2.74 -516.45 -1.41 -12.03 16 19 C 0.10 1.29 6.22 86.38 0.54 1.83 16 20 C -0.16 -1.66 10.24 71.98 0.74 -0.93 16 21 C 0.46 14.99 6.61 178.99 1.18 16.17 16 22 S -0.65 -24.88 24.76 -56.49 -1.40 -26.27 16 23 H 0.03 1.47 6.62 -2.38 -0.02 1.46 16 24 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 25 H 0.06 2.83 4.71 -2.39 -0.01 2.82 16 26 H 0.05 2.65 6.89 -2.39 -0.02 2.63 16 27 H 0.06 2.66 5.03 -2.39 -0.01 2.65 16 28 H -0.01 -0.43 6.18 -2.39 -0.01 -0.45 16 29 H 0.01 0.63 7.98 -2.39 -0.02 0.61 16 30 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.08 3.33 5.72 -2.39 -0.01 3.32 16 32 H 0.11 4.24 7.96 -2.39 -0.02 4.22 16 33 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.13 -0.17 7.71 -2.39 -0.02 -0.19 16 36 H 0.15 0.50 7.65 -2.39 -0.02 0.48 16 37 H 0.10 1.66 7.63 -2.38 -0.02 1.64 16 38 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -77.50 329.14 1.51 -75.98 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.04 Total: 6.02 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 7.33 Total: 17.80 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -7.48 Total: -120.65 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: -24.88 SS G_CDS: -1.40 Total: -26.27 kcal Total: -77.50 1.51 -75.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102391090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.419 kcal (2) G-P(sol) polarization free energy of solvation -77.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds