Wall clock time and date at job start Tue Mar 31 2020 06:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00209 * 2 1 4 4 H 1.48501 * 109.47174 * 240.00286 * 3 2 1 5 5 H 1.48502 * 109.46892 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47111 * 120.00012 * 3 2 1 7 7 C 1.37880 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00388 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47312 * 179.97438 * 9 7 2 11 11 C 1.46853 * 111.00300 * 294.21446 * 10 9 7 12 12 C 1.53036 * 109.52617 * 174.15784 * 11 10 9 13 13 C 1.53123 * 109.27621 * 59.17901 * 12 11 10 14 14 C 1.53118 * 109.16322 * 302.34369 * 13 12 11 15 15 C 1.46845 * 111.00226 * 170.00339 * 10 9 7 16 16 H 1.08995 * 109.45779 * 65.83034 * 15 10 9 17 17 C 1.50706 * 109.46220 * 305.85456 * 15 10 9 18 18 C 1.34237 * 125.03282 * 324.64945 * 17 15 10 19 19 C 1.46487 * 106.99271 * 179.85790 * 18 17 15 20 20 C 1.39636 * 134.02999 * 180.10964 * 19 18 17 21 21 C 1.36622 * 119.76703 * 180.35237 * 20 19 18 22 22 C 1.38831 * 120.52672 * 359.95853 * 21 20 19 23 23 C 1.37749 * 120.66553 * 0.02562 * 22 21 20 24 24 C 1.39131 * 119.78120 * 0.02562 * 23 22 21 25 25 N 1.36824 * 125.03369 * 144.94190 * 17 15 10 26 26 H 0.97000 * 125.06846 * 0.02562 * 25 17 15 27 27 H 0.96999 * 120.00396 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46987 * 60.00248 * 9 7 2 29 29 H 1.08995 * 109.47378 * 300.00089 * 9 7 2 30 30 H 1.09001 * 109.45745 * 54.14012 * 11 10 9 31 31 H 1.09002 * 109.44934 * 294.17089 * 11 10 9 32 32 H 1.08999 * 109.50084 * 299.24143 * 12 11 10 33 33 H 1.08997 * 109.50374 * 179.11789 * 12 11 10 34 34 H 1.08995 * 109.52360 * 182.44232 * 13 12 11 35 35 H 1.08997 * 109.52173 * 62.24805 * 13 12 11 36 36 H 1.09005 * 109.50503 * 297.72092 * 14 13 12 37 37 H 1.08998 * 109.53789 * 177.61508 * 14 13 12 38 38 H 1.07999 * 126.50430 * 359.96373 * 18 17 15 39 39 H 1.08004 * 120.11670 * 0.33397 * 20 19 18 40 40 H 1.07996 * 119.73682 * 179.97438 * 21 20 19 41 41 H 1.07994 * 119.66877 * 180.02562 * 22 21 20 42 42 H 1.08007 * 120.11031 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0018 11 6 2.9739 -3.6499 -1.2527 12 6 4.0539 -4.7302 -1.1603 13 6 3.3909 -6.0875 -0.9095 14 6 2.5580 -6.0108 0.3730 15 6 1.5214 -4.8932 0.2362 16 1 0.8598 -5.1123 -0.6018 17 6 0.7122 -4.8009 1.5042 18 6 1.0717 -4.1129 2.5993 19 6 0.0030 -4.2893 3.5856 20 6 -0.2009 -3.8295 4.8883 21 6 -1.3324 -4.1882 5.5648 22 6 -2.2821 -5.0058 4.9671 23 6 -2.1011 -5.4702 3.6830 24 6 -0.9557 -5.1184 2.9758 25 7 -0.4949 -5.4107 1.7117 26 1 -0.9569 -5.9667 1.0650 27 1 -0.4851 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5572 0.8896 30 1 3.4435 -2.6800 -1.4170 31 1 2.3051 -3.8750 -2.0835 32 1 4.7310 -4.4985 -0.3381 33 1 4.6139 -4.7659 -2.0948 34 1 4.1588 -6.8533 -0.7998 35 1 2.7434 -6.3374 -1.7499 36 1 3.2117 -5.7991 1.2193 37 1 2.0494 -6.9611 0.5348 38 1 1.9762 -3.5369 2.7282 39 1 0.5333 -3.1929 5.3595 40 1 -1.4895 -3.8327 6.5724 41 1 -3.1716 -5.2803 5.5144 42 1 -2.8459 -6.1054 3.2265 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108385479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:26 Heat of formation + Delta-G solvation = 52.683332 kcal Electronic energy + Delta-G solvation = -22506.232230 eV Core-core repulsion = 19450.846982 eV Total energy + Delta-G solvation = -3055.385248 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96973 -38.45711 -36.40469 -33.62473 -32.04075 -31.53189 -30.96253 -28.95953 -27.64540 -26.90900 -23.97138 -23.23944 -21.79404 -21.21233 -20.86901 -20.01874 -18.85310 -17.34433 -16.26552 -15.97673 -15.43253 -14.69893 -14.35852 -14.15812 -14.11083 -13.82723 -13.60333 -13.48090 -13.05567 -12.83716 -12.53042 -12.34403 -11.94757 -11.82964 -11.40225 -11.27164 -11.19803 -10.80805 -10.77089 -10.65190 -10.51070 -10.41484 -10.18218 -10.04343 -9.70619 -9.21105 -9.11873 -8.38573 -7.75505 -7.29362 -7.15476 -5.97551 -3.98605 1.49773 1.99708 3.20806 3.35646 3.40143 3.42167 3.44661 4.30327 4.44832 4.80883 4.97616 5.08882 5.18346 5.30678 5.31750 5.37534 5.39354 5.52590 5.62177 5.71304 5.78525 5.83724 5.94690 5.96772 6.05290 6.20484 6.23701 6.24157 6.31848 6.42706 6.47406 6.59005 6.72385 6.73574 6.80000 6.94672 7.21640 7.29441 7.35907 7.41316 7.59469 7.82974 7.92775 8.15249 8.21316 8.56530 9.08012 9.64656 11.13194 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.006665 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.105110 B = 4200.093699 C = 6076.409094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.187 3.813 10 N -0.522 5.522 11 C 0.066 3.934 12 C -0.119 4.119 13 C -0.118 4.118 14 C -0.104 4.104 15 C 0.147 3.853 16 H 0.033 0.967 17 C 0.092 3.908 18 C -0.158 4.158 19 C -0.105 4.105 20 C -0.066 4.066 21 C -0.157 4.157 22 C -0.108 4.108 23 C -0.133 4.133 24 C 0.097 3.903 25 N -0.595 5.595 26 H 0.408 0.592 27 H 0.261 0.739 28 H -0.017 1.017 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.018 0.982 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.153 0.847 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -13.229 3.944 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.062 3.938 10 N -0.247 5.247 11 C -0.062 4.062 12 C -0.157 4.157 13 C -0.155 4.155 14 C -0.142 4.142 15 C 0.037 3.963 16 H 0.051 0.949 17 C -0.015 4.015 18 C -0.182 4.182 19 C -0.110 4.110 20 C -0.085 4.085 21 C -0.176 4.176 22 C -0.128 4.128 23 C -0.154 4.154 24 C -0.011 4.011 25 N -0.198 5.198 26 H 0.244 0.756 27 H 0.070 0.930 28 H 0.001 0.999 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.036 0.964 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.170 0.830 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.672 -13.079 4.209 13.756 hybrid contribution -0.639 0.677 -1.080 1.425 sum 0.033 -12.402 3.129 12.791 Atomic orbital electron populations 1.69955 1.06037 1.26729 1.50834 1.24962 0.94795 0.99158 0.95544 0.86607 0.79457 0.83014 0.78589 1.20377 1.21456 1.20150 1.21073 0.93315 0.89865 1.50202 0.91963 1.19877 0.90219 0.86965 0.96700 1.62027 1.27455 1.01262 1.33980 1.21963 0.94802 0.99443 0.90010 1.21656 0.98345 0.94416 1.01257 1.21567 0.98860 0.97734 0.97358 1.21600 0.97450 0.96377 0.98773 1.20027 0.92580 0.92899 0.90755 0.94887 1.20055 0.86272 0.97999 0.97155 1.21504 1.00527 1.04623 0.91594 1.19342 0.95940 1.00712 0.94984 1.20291 0.97305 0.98269 0.92635 1.20515 0.95320 1.01605 1.00153 1.20657 0.99097 0.98752 0.94270 1.19922 0.95911 1.04415 0.95186 1.18183 0.96527 1.00380 0.86000 1.41649 1.19029 1.46037 1.13101 0.75650 0.92983 0.99922 0.93467 0.89404 0.96355 0.91221 0.92375 0.92271 0.92742 0.90616 0.92587 0.82963 0.86258 0.86609 0.86425 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.04 8.43 -34.44 -0.29 -14.33 16 8 H 0.06 1.69 7.12 -52.48 -0.37 1.32 16 9 C 0.19 4.82 4.34 -4.98 -0.02 4.80 16 10 N -0.52 -10.80 4.19 -229.51 -0.96 -11.76 16 11 C 0.07 1.23 5.29 -3.83 -0.02 1.21 16 12 C -0.12 -1.73 6.09 -26.65 -0.16 -1.89 16 13 C -0.12 -1.53 6.00 -26.61 -0.16 -1.69 16 14 C -0.10 -1.49 5.36 -26.65 -0.14 -1.63 16 15 C 0.15 2.60 2.34 -68.87 -0.16 2.44 16 16 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 17 C 0.09 1.68 4.93 -81.77 -0.40 1.28 16 18 C -0.16 -3.12 9.00 -37.67 -0.34 -3.46 16 19 C -0.10 -1.95 6.37 -105.14 -0.67 -2.62 16 20 C -0.07 -1.10 10.05 -39.64 -0.40 -1.49 16 21 C -0.16 -2.24 9.97 -39.95 -0.40 -2.64 16 22 C -0.11 -1.48 10.01 -39.54 -0.40 -1.88 16 23 C -0.13 -1.96 10.08 -39.43 -0.40 -2.35 16 24 C 0.10 1.66 7.28 -83.99 -0.61 1.05 16 25 N -0.59 -9.71 6.07 -6.95 -0.04 -9.75 16 26 H 0.41 5.38 8.96 -40.82 -0.37 5.02 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H -0.02 -0.48 8.12 -51.93 -0.42 -0.90 16 29 H 0.05 1.32 5.60 -51.93 -0.29 1.03 16 30 H 0.09 1.79 6.70 -51.93 -0.35 1.44 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.15 3.14 8.06 -52.49 -0.42 2.72 16 39 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -31.00 335.64 -11.33 -42.33 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.43 Total: 5.32 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -4.67 Total: -21.69 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.27 Total: -47.74 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.00 -11.33 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108385479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.009 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds